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Properties
| Property Name | Value |
|---|
| TranscriptId | 590023 |
| Track | FilteredModels2 |
| ProteinId | 589937 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:283916..285732 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5671 ID=mRNA_5671|Name=jgi.p|Nanoce1779_2|589937|organism=Nannochloropsis oceanica|type=mRNA|length=1368bp
AGGCAAGCAAGCCAAGGACCGTCTCCCTCTATCCGAGCATCAAATCAGGC
AGAGTCCTTCTTCCACAGGCTCACCAAAAGAACCAACAACAATGACCGGC
GCTCAAACCAACCCTGCCAATCGCCGCCTGGAGCGTCTCGGAAGCCATCT
GACGAAGAAGCCTACCGGTCCCGGCTTTCGCGACGGTGATGTCGTGGTTG
TCTCTGCTCTCCGCACACCCCTTTGCAAGGCTAAACGCGGTGCCTTCAAA
AGCACCACTACTGACGACTTGCTTGCTCCCGTCTTGGCTGCCGTGGTGAA
GCAATCGGGCATCGACTCTGCTTCCCTCGGAGACATTGTCATTGGTAACG
TCTTGCAGGCGGGTGCTGGGGCTGTTGGAGCAAGGATGGCTCAGTTCTAT
GCTGGAATCCCTTATGAGGTACCTCTCTGCACCGTGAACCGCCAGTGCTC
CTCCGGCCTGCAAGCTTTTTTCCAAGTCGCCGCCGGCATTCAATCCGGGC
TCTACTCCACCGCCATCGCTGGCGGGGTGGAATCAATGTCCCTCACCGAC
ATGGCATCCTCTGTCCCCGAAATCAATTTCGACCGGGTCCAGGAATTCAA
AAATTCAAAAGACTGCATCATCCCTATGGGCCAGACAAGCGATGAGGTTG
CGTCAAGGTTCAGGGTCACGAGGGAGGAACAGGACATATTCGCTGCTGCC
TCGCACGCCAAGGCAGAGGCGGCGCAGAAGAGTGGGAAATTTGCGGAGGA
GATCGTGCCGATTACAGTGGAGGGGGGAGAGGGGGAAGGAGTAGTTGTGA
AGGAGGACGAGGGGATTCGCCCGGGGACAACAGCGGAGAAATTGGGAAAA
TTGAGGTCAAGTTTCACGGAGGGGGGCTCGACTACGGCAGGGAACAGTAG
TCAGATGACTGACGGAGCGGCGGCGGTGGTGGTAGCGAGTAGGGGCGCAG
CAGCAGAGCATGGCTTGCCGGTGTTGGGCGTCTTGAGGGGGGCGGCGGTT
GTAGGTGTGCCTCCGGACATTATGGGAGTGGGGCCTGCGGTTGCTATTCC
TGCGGCGTTAGCACGTGCGGGGTTGAGCGTCGAGGAGGTGGATGTGTACG
AGATTAACGAGGCGTTTGCGAGCCAGTGCTTGTATTGTGTGCGGGAGTTG
GGGATTCCAGTAGAGAAGGTCAACCCGAATGGGGGGGCCATTGCGCTTGG
TCATCCGTTGGGGGCCACGGGGGCGAGGCAGATTGCGACGTTGCTGCATG
AGATGAGGAGGACGGGAAAGAGGTATGGAGTGGTGAGCATGTGCATTGGC
ACGGGCATGGGGGCGGCGGCCGTGTTTGAGAATGAGGGTTATAAGGTGCG
GAAGTAGAGGAGAGGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|589937 >mRNA_5671-protein ID=mRNA_5671-protein|Name=jgi.p|Nanoce1779_2|589937|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MTGAQTNPANRRLERLGSHLTKKPTGPGFRDGDVVVVSALRTPLCKAKRG
AFKSTTTDDLLAPVLAAVVKQSGIDSASLGDIVIGNVLQAGAGAVGARMA
QFYAGIPYEVPLCTVNRQCSSGLQAFFQVAAGIQSGLYSTAIAGGVESMS
LTDMASSVPEINFDRVQEFKNSKDCIIPMGQTSDEVASRFRVTREEQDIF
AAASHAKAEAAQKSGKFAEEIVPITVEGGEGEGVVVKEDEGIRPGTTAEK
LGKLRSSFTEGGSTTAGNSSQMTDGAAAVVVASRGAAAEHGLPVLGVLRG
AAVVGVPPDIMGVGPAVAIPAALARAGLSVEEVDVYEINEAFASQCLYCV
RELGIPVEKVNPNGGAIALGHPLGATGARQIATLLHEMRRTGKRYGVVSM
CIGTGMGAAAVFENEGYKVRK* back to topmRNA from alignment at scaffold_11:283916..285732- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5671 ID=mRNA_5671|Name=jgi.p|Nanoce1779_2|589937|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp|location=Sequence derived from alignment at scaffold_11:283916..285732- (Nannochloropsis oceanica)
AGGCAAGCAAGCCAAGGACCGTCTCCCTCTATCCGAGCATCAAATCAGGC
AGAGTCCTTCTTCCACAGGCTCACCAAAAGAACCAACAACAATGACCGGC
GCTCAAACCAACCCTGCCAATCGCCGCCTGGAGCGTCTCGGAAGCCATCT
GACGAAGAAGGTATGTATGAAAATGCCGGCGGAAGGAGGGTTTGGCGGTA
GGGTTGAGGGAGGGAGTGTTGATGCAGGAAAGGCACACAACTTCAATGCG
CATGACTTCGTCAGGGATACCCTAAGCTTGTAAGACTCTGGATACATCTG
GAAGATGTGTGACTTTTGAATGATGTGTACATAAGTCATTTTGCTGGCCT
GTTCGGCTTCTTGAGAGAGACCTGCCATGCCAAAGCGTAAGTGCTTGGTT
CCCAGTTTTCCACTCCATCATCCTTCAACTCAACCACCCTCCCTCCGATC
CCCCTCTACGCATCCTACCCCCACCTAGCCTACCGGTCCCGGCTTTCGCG
ACGGTGATGTCGTGGTTGTCTCTGCTCTCCGCACACCCCTTTGCAAGGCT
AAACGCGGTGCCTTCAAAAGCACCACTACTGACGACTTGCTTGCTCCCGT
CTTGGCTGCCGTGGTGAAGCAATCGGGCATCGACTCTGCTTCCCTCGGAG
ACATTGTCATTGGTAACGTCTTGCAGGCGGGTGCTGGGGCTGTTGGAGCA
AGGATGGCTCAGTTCTATGCTGGAATCCCTTATGAGGTGAGGAAGGATGA
AGGGAGGGTGGGAGGGAGGAGGGAAGAAGGCAGATGGGGGTTATCAAGCG
TGAACATGGTAATGTAATCTACTTCCTGAATACTTAGCCGTCGCTCCCTA
TTATCGTCCCTTCCCAGGTACCTCTCTGCACCGTGAACCGCCAGTGCTCC
TCCGGCCTGCAAGCTTTTTTCCAAGTCGCCGCCGGCATTCAATCCGGGCT
CTACTCCACCGCCATCGCTGGCGGGGTGGAATCAATGTCCCTCACCGACA
TGGCATCCTCTGTCCCCGAAATCAATTTCGACCGGGTCCAGGAATTCAAA
AATTCAAAAGACTGCATCATCCCTATGGGCCAGACAAGCGATGAGGTTGC
GTCAAGGTTCAGGGTCACGAGGGAGGAACAGGACATATTCGCTGCTGCCT
CGCACGCCAAGGCAGAGGCGGCGCAGAAGAGTGGGAAATTTGCGGAGGAG
ATCGTGCCGATTACAGTGGAGGGGGGAGAGGGGGAAGGAGTAGTTGTGAA
GGAGGACGAGGGGATTCGCCCGGGGACAACAGCGGAGAAATTGGGAAAAT
TGAGGTCAAGTTTCACGGAGGGGGGCTCGACTACGGCAGGGAACAGTAGT
CAGATGACTGACGGAGCGGCGGCGGTGGTGGTAGCGAGTAGGGGCGCAGC
AGCAGAGCATGGCTTGCCGGTGTTGGGCGTCTTGAGGGGGGCGGCGGTTG
TAGGTGTGCCTCCGGACATTATGGGAGTGGGGCCTGCGGTTGCTATTCCT
GCGGCGTTAGCACGTGCGGGGTTGAGCGTCGAGGAGGTGGATGTGTACGA
GATTAACGAGGCGTTTGCGAGCCAGTGCTTGTATTGTGTGCGGGAGTTGG
GGATTCCAGTAGAGAAGGTCAACCCGAATGGGGGGGCCATTGCGCTTGGT
CATCCGTTGGGGGCCACGGGGGCGAGGCAGATTGCGACGTTGCTGCATGA
GATGAGGAGGACGGGAAAGAGGTATGGAGTGGTGAGCATGTGCATTGGCA
CGGGCATGGGGGCGGCGGCCGTGTTTGAGAATGAGGGTTATAAGGTGCGG
AAGTAGAGGAGAGGGGG back to topCoding sequence (CDS) from alignment at scaffold_11:283916..285732- >mRNA_5671 ID=mRNA_5671|Name=jgi.p|Nanoce1779_2|589937|organism=Nannochloropsis oceanica|type=CDS|length=3798bp|location=Sequence derived from alignment at scaffold_11:283916..285732- (Nannochloropsis oceanica)
GTACCTCTCTGCACCGTGAACCGCCAGTGCTCCTCCGGCCTGCAAGCTTT
TTTCCAAGTCGCCGCCGGCATTCAATCCGGGCTCTACTCCACCGCCATCG
CTGGCGGGGTGGAATCAATGTCCCTCACCGACATGGCATCCTCTGTCCCC
GAAATCAATTTCGACCGGGTCCAGGAATTCAAAAATTCAAAAGACTGCAT
CATCCCTATGGGCCAGACAAGCGATGAGGTTGCGTCAAGGTTCAGGGTCA
CGAGGGAGGAACAGGACATATTCGCTGCTGCCTCGCACGCCAAGGCAGAG
GCGGCGCAGAAGAGTGGGAAATTTGCGGAGGAGATCGTGCCGATTACAGT
GGAGGGGGGAGAGGGGGAAGGAGTAGTTGTGAAGGAGGACGAGGGGATTC
GCCCGGGGACAACAGCGGAGAAATTGGGAAAATTGAGGTCAAGTTTCACG
GAGGGGGGCTCGACTACGGCAGGGAACAGTAGTCAGATGACTGACGGAGC
GGCGGCGGTGGTGGTAGCGAGTAGGGGCGCAGCAGCAGAGCATGGCTTGC
CGGTGTTGGGCGTCTTGAGGGGGGCGGCGGTTGTAGGTGTGCCTCCGGAC
ATTATGGGAGTGGGGCCTGCGGTTGCTATTCCTGCGGCGTTAGCACGTGC
GGGGTTGAGCGTCGAGGAGGTGGATGTGTACGAGATTAACGAGGCGTTTG
CGAGCCAGTGCTTGTATTGTGTGCGGGAGTTGGGGATTCCAGTAGAGAAG
GTCAACCCGAATGGGGGGGCCATTGCGCTTGGTCATCCGTTGGGGGCCAC
GGGGGCGAGGCAGATTGCGACGTTGCTGCATGAGATGAGGAGGACGGGAA
AGAGGTATGGAGTGGTGAGCATGTGCATTGGCACGGGCATGGGGGCGGCG
GCCGTGTTTGAGAATGAGGGTTATAAGGTGCGGAAGTAGCCTACCGGTCC
CGGCTTTCGCGACGGTGATGTCGTGGTTGTCTCTGCTCTCCGCACACCCC
TTTGCAAGGCTAAACGCGGTGCCTTCAAAAGCACCACTACTGACGACTTG
CTTGCTCCCGTCTTGGCTGCCGTGGTGAAGCAATCGGGCATCGACTCTGC
TTCCCTCGGAGACATTGTCATTGGTAACGTCTTGCAGGCGGGTGCTGGGG
CTGTTGGAGCAAGGATGGCTCAGTTCTATGCTGGAATCCCTTATGAGATG
ACCGGCGCTCAAACCAACCCTGCCAATCGCCGCCTGGAGCGTCTCGGAAG
CCATCTGACGAAGAAGGTACCTCTCTGCACCGTGAACCGCCAGTGCTCCT
CCGGCCTGCAAGCTTTTTTCCAAGTCGCCGCCGGCATTCAATCCGGGCTC
TACTCCACCGCCATCGCTGGCGGGGTGGAATCAATGTCCCTCACCGACAT
GGCATCCTCTGTCCCCGAAATCAATTTCGACCGGGTCCAGGAATTCAAAA
ATTCAAAAGACTGCATCATCCCTATGGGCCAGACAAGCGATGAGGTTGCG
TCAAGGTTCAGGGTCACGAGGGAGGAACAGGACATATTCGCTGCTGCCTC
GCACGCCAAGGCAGAGGCGGCGCAGAAGAGTGGGAAATTTGCGGAGGAGA
TCGTGCCGATTACAGTGGAGGGGGGAGAGGGGGAAGGAGTAGTTGTGAAG
GAGGACGAGGGGATTCGCCCGGGGACAACAGCGGAGAAATTGGGAAAATT
GAGGTCAAGTTTCACGGAGGGGGGCTCGACTACGGCAGGGAACAGTAGTC
AGATGACTGACGGAGCGGCGGCGGTGGTGGTAGCGAGTAGGGGCGCAGCA
GCAGAGCATGGCTTGCCGGTGTTGGGCGTCTTGAGGGGGGCGGCGGTTGT
AGGTGTGCCTCCGGACATTATGGGAGTGGGGCCTGCGGTTGCTATTCCTG
CGGCGTTAGCACGTGCGGGGTTGAGCGTCGAGGAGGTGGATGTGTACGAG
ATTAACGAGGCGTTTGCGAGCCAGTGCTTGTATTGTGTGCGGGAGTTGGG
GATTCCAGTAGAGAAGGTCAACCCGAATGGGGGGGCCATTGCGCTTGGTC
ATCCGTTGGGGGCCACGGGGGCGAGGCAGATTGCGACGTTGCTGCATGAG
ATGAGGAGGACGGGAAAGAGGTATGGAGTGGTGAGCATGTGCATTGGCAC
GGGCATGGGGGCGGCGGCCGTGTTTGAGAATGAGGGTTATAAGGTGCGGA
AGTAGCCTACCGGTCCCGGCTTTCGCGACGGTGATGTCGTGGTTGTCTCT
GCTCTCCGCACACCCCTTTGCAAGGCTAAACGCGGTGCCTTCAAAAGCAC
CACTACTGACGACTTGCTTGCTCCCGTCTTGGCTGCCGTGGTGAAGCAAT
CGGGCATCGACTCTGCTTCCCTCGGAGACATTGTCATTGGTAACGTCTTG
CAGGCGGGTGCTGGGGCTGTTGGAGCAAGGATGGCTCAGTTCTATGCTGG
AATCCCTTATGAGATGACCGGCGCTCAAACCAACCCTGCCAATCGCCGCC
TGGAGCGTCTCGGAAGCCATCTGACGAAGAAGGTACCTCTCTGCACCGTG
AACCGCCAGTGCTCCTCCGGCCTGCAAGCTTTTTTCCAAGTCGCCGCCGG
CATTCAATCCGGGCTCTACTCCACCGCCATCGCTGGCGGGGTGGAATCAA
TGTCCCTCACCGACATGGCATCCTCTGTCCCCGAAATCAATTTCGACCGG
GTCCAGGAATTCAAAAATTCAAAAGACTGCATCATCCCTATGGGCCAGAC
AAGCGATGAGGTTGCGTCAAGGTTCAGGGTCACGAGGGAGGAACAGGACA
TATTCGCTGCTGCCTCGCACGCCAAGGCAGAGGCGGCGCAGAAGAGTGGG
AAATTTGCGGAGGAGATCGTGCCGATTACAGTGGAGGGGGGAGAGGGGGA
AGGAGTAGTTGTGAAGGAGGACGAGGGGATTCGCCCGGGGACAACAGCGG
AGAAATTGGGAAAATTGAGGTCAAGTTTCACGGAGGGGGGCTCGACTACG
GCAGGGAACAGTAGTCAGATGACTGACGGAGCGGCGGCGGTGGTGGTAGC
GAGTAGGGGCGCAGCAGCAGAGCATGGCTTGCCGGTGTTGGGCGTCTTGA
GGGGGGCGGCGGTTGTAGGTGTGCCTCCGGACATTATGGGAGTGGGGCCT
GCGGTTGCTATTCCTGCGGCGTTAGCACGTGCGGGGTTGAGCGTCGAGGA
GGTGGATGTGTACGAGATTAACGAGGCGTTTGCGAGCCAGTGCTTGTATT
GTGTGCGGGAGTTGGGGATTCCAGTAGAGAAGGTCAACCCGAATGGGGGG
GCCATTGCGCTTGGTCATCCGTTGGGGGCCACGGGGGCGAGGCAGATTGC
GACGTTGCTGCATGAGATGAGGAGGACGGGAAAGAGGTATGGAGTGGTGA
GCATGTGCATTGGCACGGGCATGGGGGCGGCGGCCGTGTTTGAGAATGAG
GGTTATAAGGTGCGGAAGTAGCCTACCGGTCCCGGCTTTCGCGACGGTGA
TGTCGTGGTTGTCTCTGCTCTCCGCACACCCCTTTGCAAGGCTAAACGCG
GTGCCTTCAAAAGCACCACTACTGACGACTTGCTTGCTCCCGTCTTGGCT
GCCGTGGTGAAGCAATCGGGCATCGACTCTGCTTCCCTCGGAGACATTGT
CATTGGTAACGTCTTGCAGGCGGGTGCTGGGGCTGTTGGAGCAAGGATGG
CTCAGTTCTATGCTGGAATCCCTTATGAGATGACCGGCGCTCAAACCAAC
CCTGCCAATCGCCGCCTGGAGCGTCTCGGAAGCCATCTGACGAAGAAG back to top
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