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Properties
| Property Name | Value |
|---|
| TranscriptId | 590021 |
| Track | FilteredModels2 |
| ProteinId | 589935 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:282273..283899 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5670 ID=mRNA_5670|Name=jgi.p|Nanoce1779_2|589935|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp
GGGCGGTGGTGGGCTCGGTGCGCCGGCTGGCAACAGCTCTGCCACCGCTG
CTGCTACTGCTGTTGCTGCTGCAGCGGGAGGGGGAAACAAGGGAGATGAG
AATGGCAAAAAGCCTCGCTCGGAACAGCAGGCAGCGATGGCAGCTCCACG
TAGCATGGTCCCTCCCTCTGCCCCTACCTCCTCATCTGTCCCTCGTCCTG
GTCCTGCTCTTGCTGCTAGTGGTGGCGGTAATGGTGGTGGTGGTACGCTT
GGCAACAGTCGCCTTGGCGCGCCCATCGATCGACTTAAATCTCCTCCTTC
CAAGATGAAGAATGGAGGCAGCAGCAGCAACACCAGCAACAACCGCAACA
GCGGGAGTGCCCTCAAGGACATTTCCAACAAGCGTGCTGCTGCTGCTGCT
ATTGCTGCTCCTGGCACCAACAAGACTGCAGCTGCTCCTACCGCTACTGC
TTCTGCTGCTGGCGCGCCGCCGAGCAAGCTCAAATACGCAGGGATGGGCA
TCGGTGAGTCGTACGCGATTTCGGACCGAGAGGAAAGTAGCGACGAGGAG
TACGATAGCGACGGAGGGAGTGGAGAGAAGGGAGGCAAAGGAGCCACCAA
GAGAGTCCCTGACTGGGCCAAGGGCCCTGCATTGCGCGAGGCGTTGGAAA
GTCAGTTTAATAAGAAGCAGAAGGTGGATCCTGATACGATTTTCCCGGAG
GTAAGGACATGTGATTTGGAAGAGATCTTCAAAAGTTATCAGGCAGGGGA
GGGAGCGGGGAAGAAAAGGGCGTATCGCCAAAGGCAGAGCACAGGAAACT
GGCAGAGGGATGGGCTGAGCAGTGCGGAGAAGGTCCGGTATAGGGAGGAT
ATGGGGTACGAGGAGGGGTGTTAGAGGGAGGGACGGGGGAACTTCTTGTT
ATTACATCCGGATACTTTGCAGGCATACTTTTTCTGGCGGTTAAACAAAG
GAGGAGGAGAGAATGAGGAGGAGGCGGGGAAACGAAAACCAGGAGAGACA
AGAACGATAGCGATTAACGCATTAGGAAAACACGGAGAGAGATTGACATT
TGCTTTTCTTGCTCAGCGGAGATGGAGAGAAATGCATCAAAGCATCCAAA
CGGACGACAACGACGACGAAGAATTAGAGGAGCGCTCAAAACGCGAAGAT
AATCCAAACGTGACGATTAGAAGTGCATGAAGAAAAGCGCAAGACCTCGA
GGTTTTGCTGGGGCAGTTTGATTTGTCCTATGACTCGTCTTTCTCTATGC
GTATTTGTGCGACAAATTTTCTATCTTCTCTCCTCGCTCTCATCGATGTC
TTAACTTCTTCTTGTCCGCCCTCCTCTTTTAACGTTTATATAGCTTTTTT
ATTTTCGAGTGCCACAAACAACTTTTCCTGTGACATGTGTACATGCAGCA
GCATCTGCATCTGCATCTGCAAGCTCACCAGCATCTGCATCACCATCAGC
TGCAGCACTAGCAGCAACAGCCGCAGCAGCAAAGATACCCTACCTACGGT
TTAGATGCTTTCCCCCCTCATCTCAACTTGTCCCCTGCCCATCTCCAGCA
GCATTGTCTAAGGCTCCTCCTTTCTCTATCACCTTCCCCCCCAGCAACGT
TGTGCATGCATACAACCTTTCAACCCC back to topprotein sequence of jgi.p|Nanoce1779_2|589935 >mRNA_5670-protein ID=mRNA_5670-protein|Name=jgi.p|Nanoce1779_2|589935|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MAAPRSMVPPSAPTSSSVPRPGPALAASGGGNGGGGTLGNSRLGAPIDRL
KSPPSKMKNGGSSSNTSNNRNSGSALKDISNKRAAAAAIAAPGTNKTAAA
PTATASAAGAPPSKLKYAGMGIGESYAISDREESSDEEYDSDGGSGEKGG
KGATKRVPDWAKGPALREALESQFNKKQKVDPDTIFPEVRTCDLEEIFKS
YQAGEGAGKKRAYRQRQSTGNWQRDGLSSAEKVRYREDMGYEEGC* back to topmRNA from alignment at scaffold_11:282273..283899+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5670 ID=mRNA_5670|Name=jgi.p|Nanoce1779_2|589935|organism=Nannochloropsis oceanica|type=mRNA|length=1627bp|location=Sequence derived from alignment at scaffold_11:282273..283899+ (Nannochloropsis oceanica)
GGGCGGTGGTGGGCTCGGTGCGCCGGCTGGCAACAGCTCTGCCACCGCTG
CTGCTACTGCTGTTGCTGCTGCAGCGGGAGGGGGAAACAAGGGAGATGAG
AATGGCAAAAAGCCTCGCTCGGAACAGCAGGCAGCGATGGCAGCTCCACG
TAGCATGGTCCCTCCCTCTGCCCCTACCTCCTCATCTGTCCCTCGTCCTG
GTCCTGCTCTTGCTGCTAGTGGTGGCGGTAATGGTGGTGGTGGTACGCTT
GGCAACAGTCGCCTTGGCGCGCCCATCGATCGACTTAAATCTCCTCCTTC
CAAGATGAAGAATGGAGGCAGCAGCAGCAACACCAGCAACAACCGCAACA
GCGGGAGTGCCCTCAAGGACATTTCCAACAAGCGTGCTGCTGCTGCTGCT
ATTGCTGCTCCTGGCACCAACAAGACTGCAGCTGCTCCTACCGCTACTGC
TTCTGCTGCTGGCGCGCCGCCGAGCAAGCTCAAATACGCAGGGATGGGCA
TCGGTGAGTCGTACGCGATTTCGGACCGAGAGGAAAGTAGCGACGAGGAG
TACGATAGCGACGGAGGGAGTGGAGAGAAGGGAGGCAAAGGAGCCACCAA
GAGAGTCCCTGACTGGGCCAAGGGCCCTGCATTGCGCGAGGCGTTGGAAA
GTCAGTTTAATAAGAAGCAGAAGGTGGATCCTGATACGATTTTCCCGGAG
GTAAGGACATGTGATTTGGAAGAGATCTTCAAAAGTTATCAGGCAGGGGA
GGGAGCGGGGAAGAAAAGGGCGTATCGCCAAAGGCAGAGCACAGGAAACT
GGCAGAGGGATGGGCTGAGCAGTGCGGAGAAGGTCCGGTATAGGGAGGAT
ATGGGGTACGAGGAGGGGTGTTAGAGGGAGGGACGGGGGAACTTCTTGTT
ATTACATCCGGATACTTTGCAGGCATACTTTTTCTGGCGGTTAAACAAAG
GAGGAGGAGAGAATGAGGAGGAGGCGGGGAAACGAAAACCAGGAGAGACA
AGAACGATAGCGATTAACGCATTAGGAAAACACGGAGAGAGATTGACATT
TGCTTTTCTTGCTCAGCGGAGATGGAGAGAAATGCATCAAAGCATCCAAA
CGGACGACAACGACGACGAAGAATTAGAGGAGCGCTCAAAACGCGAAGAT
AATCCAAACGTGACGATTAGAAGTGCATGAAGAAAAGCGCAAGACCTCGA
GGTTTTGCTGGGGCAGTTTGATTTGTCCTATGACTCGTCTTTCTCTATGC
GTATTTGTGCGACAAATTTTCTATCTTCTCTCCTCGCTCTCATCGATGTC
TTAACTTCTTCTTGTCCGCCCTCCTCTTTTAACGTTTATATAGCTTTTTT
ATTTTCGAGTGCCACAAACAACTTTTCCTGTGACATGTGTACATGCAGCA
GCATCTGCATCTGCATCTGCAAGCTCACCAGCATCTGCATCACCATCAGC
TGCAGCACTAGCAGCAACAGCCGCAGCAGCAAAGATACCCTACCTACGGT
TTAGATGCTTTCCCCCCTCATCTCAACTTGTCCCCTGCCCATCTCCAGCA
GCATTGTCTAAGGCTCCTCCTTTCTCTATCACCTTCCCCCCCAGCAACGT
TGTGCATGCATACAACCTTTCAACCCC back to topCoding sequence (CDS) from alignment at scaffold_11:282273..283899+ >mRNA_5670 ID=mRNA_5670|Name=jgi.p|Nanoce1779_2|589935|organism=Nannochloropsis oceanica|type=CDS|length=738bp|location=Sequence derived from alignment at scaffold_11:282273..283899+ (Nannochloropsis oceanica)
ATGGCAGCTCCACGTAGCATGGTCCCTCCCTCTGCCCCTACCTCCTCATC
TGTCCCTCGTCCTGGTCCTGCTCTTGCTGCTAGTGGTGGCGGTAATGGTG
GTGGTGGTACGCTTGGCAACAGTCGCCTTGGCGCGCCCATCGATCGACTT
AAATCTCCTCCTTCCAAGATGAAGAATGGAGGCAGCAGCAGCAACACCAG
CAACAACCGCAACAGCGGGAGTGCCCTCAAGGACATTTCCAACAAGCGTG
CTGCTGCTGCTGCTATTGCTGCTCCTGGCACCAACAAGACTGCAGCTGCT
CCTACCGCTACTGCTTCTGCTGCTGGCGCGCCGCCGAGCAAGCTCAAATA
CGCAGGGATGGGCATCGGTGAGTCGTACGCGATTTCGGACCGAGAGGAAA
GTAGCGACGAGGAGTACGATAGCGACGGAGGGAGTGGAGAGAAGGGAGGC
AAAGGAGCCACCAAGAGAGTCCCTGACTGGGCCAAGGGCCCTGCATTGCG
CGAGGCGTTGGAAAGTCAGTTTAATAAGAAGCAGAAGGTGGATCCTGATA
CGATTTTCCCGGAGGTAAGGACATGTGATTTGGAAGAGATCTTCAAAAGT
TATCAGGCAGGGGAGGGAGCGGGGAAGAAAAGGGCGTATCGCCAAAGGCA
GAGCACAGGAAACTGGCAGAGGGATGGGCTGAGCAGTGCGGAGAAGGTCC
GGTATAGGGAGGATATGGGGTACGAGGAGGGGTGTTAG back to top
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