jgi.p|Nanoce1779_2|245246, mRNA_567 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|245246
Unique NamemRNA_567
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length624
Alignment locationscaffold_3:1377241..1378069 +

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Properties
Property NameValue
TranscriptId245332
TrackFilteredModels2
ProteinId245246
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1377241..1378069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|245246gene_567Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|245246mRNA_567-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_567CDS_567Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_567 ID=mRNA_567|Name=jgi.p|Nanoce1779_2|245246|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
CAAAAGCTAGACTAGACAGGAATCGGCTCAACTCATTATTACGCAACAAA
CCTTGTAAGCCATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACA
AGCCCTGAAAGCAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACT
ATCACGGGAACCCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGA
TGGAAGGGTACCTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGC
CTATTGAAGCGCTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTA
CACCAGTATTGTTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCA
TTTATTACTACGTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAG
GTGGACTGGAAAGATAAAAGATGCACACTCGTACAAAACATCATTCAATC
ACAGTTGGGCCTTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACG
AGTACTTCTCGGCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTGAACA
AGGAAGTTGTCTACAGCTCGATAATTGTACATAAATTTAGCAGATTCGGA
CTCAATAAGATTGGATAAGCCAAC
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protein sequence of jgi.p|Nanoce1779_2|245246

>mRNA_567-protein ID=mRNA_567-protein|Name=jgi.p|Nanoce1779_2|245246|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MPTPLELMIPSTTSPESSPTHAKSQLKPQLSREPSRAAVARMQAIEMEGY
LDVFFTYMECIGRLLKRLVSYAISIMTFLYTSIVIRLGLVLVSAIVIYYY
VLVSDHKREMESEVDWKDKRCTLVQNIIQSQLGLGKISGVNDPKLHEYFS
ANFFKQFWSWR*
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mRNA from alignment at scaffold_3:1377241..1378069+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_567 ID=mRNA_567|Name=jgi.p|Nanoce1779_2|245246|organism=Nannochloropsis oceanica|type=mRNA|length=829bp|location=Sequence derived from alignment at scaffold_3:1377241..1378069+ (Nannochloropsis oceanica)
CAAAAGCTAGACTAGACAGGAATCGGCTCAACTCATTATTACGCAACAAA
CCTTGTAAGCCATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACA
AGCCCTGAAAGCAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACT
ATCACGGGAACCCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGA
TGGAAGGGTACCTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGC
CTATTGAAGCGCTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTA
CACCAGTATTGTTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCA
TTTATTACTACGTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAG
GTGGACTGGAAAGATAAAAGATGCACACTCGTACAAAACATCATTCAATC
ACAGTTGGGCCTTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACG
GTATGTCGAGAGGGAGAGGGGTCAGAGGGAAGGTAAAGAAGGGCAGGGGG
GGAGAGATACCAAGAGTGAAAGAGTGGTTGTTGAATGCTTATGATGCATG
TTAAAGATTGAGGATGGGAAGAATGATGGTAGAGTTGGTGCGTGTATCTC
ATTTAGATCCATGATAACCCACAACCACCATCCCCCCATCATCGCCACCC
CACAGAGTACTTCTCGGCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGT
GAACAAGGAAGTTGTCTACAGCTCGATAATTGTACATAAATTTAGCAGAT
TCGGACTCAATAAGATTGGATAAGCCAAC
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Coding sequence (CDS) from alignment at scaffold_3:1377241..1378069+

>mRNA_567 ID=mRNA_567|Name=jgi.p|Nanoce1779_2|245246|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_3:1377241..1378069+ (Nannochloropsis oceanica)
ATGCCGACGCCCTTGGAGTTGATGATTCCGTCAACCACAAGCCCTGAAAG
CAGCCCCACCCACGCCAAGTCACAATTGAAGCCCCAACTATCACGGGAAC
CCTCCCGTGCAGCAGTGGCCCGCATGCAAGCCATAGAGATGGAAGGGTAC
CTCGACGTTTTTTTCACTTACATGGAATGCATAGGCCGCCTATTGAAGCG
CTTGGTCTCTTATGCCATCAGCATTATGACATTTCTTTACACCAGTATTG
TTATTCGCTTAGGCTTGGTGTTGGTTTCAGCCATCGTCATTTATTACTAC
GTATTGGTAAGTGATCACAAGAGAGAAATGGAGTCAGAGGTGGACTGGAA
AGATAAAAGATGCACACTCGTACAAAACATCATTCAATCACAGTTGGGCC
TTGGCAAGATTTCCGGCGTAAATGACCCTAAGCTGCACGAGTACTTCTCG
GCCAACTTCTTCAAGCAATTTTGGAGTTGGAGGTGAATGCCGACGCCCTT
GGAGTTGATGATTCCGTCAACCACAAGCCCTGAAAGCAGCCCCACCCACG
CCAAGTCACAATTGAAGCCCCAACTATCACGGGAACCCTCCCGTGCAGCA
GTGGCCCGCATGCAAGCCATAGAGATGGAAGGGTACCTCGACGTTTTTTT
CACTTACATGGAATGCATAGGCCGCCTATTGAAGCGCTTGGTCTCTTATG
CCATCAGCATTATGACATTTCTTTACACCAGTATTGTTATTCGCTTAGGC
TTGGTGTTGGTTTCAGCCATCGTCATTTATTACTACGTATTGGTAAGTGA
TCACAAGAGAGAAATGGAGTCAGAGGTGGACTGGAAAGATAAAAGATGCA
CACTCGTACAAAACATCATTCAATCACAGTTGGGCCTTGGCAAGATTTCC
GGCGTAAATGACCCTAAGCTGCACGAGTACTTCTCGGCCAACTTCTTCAA
GCAATTTTGGAGTTGGAGGTGA
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Synonyms
Publications