jgi.p|Nanoce1779_2|589932, mRNA_5669 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589932
Unique NamemRNA_5669
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1899
Alignment locationscaffold_11:279215..281113 -

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Properties
Property NameValue
TranscriptId590018
TrackFilteredModels2
ProteinId589932
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:279215..281113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589932gene_5669Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589932mRNA_5669-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5669CDS_5669Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5669 ID=mRNA_5669|Name=jgi.p|Nanoce1779_2|589932|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp
AGGAGGAGGAAGCGGAGGAGGAGGCTGCAGAAGGGGTGGGGACAGGCGTG
GGGAGGGCGAATGGAGCAGCAATTGCGTTTTCTTTTCCTGCCGAAAGAAC
GTCATGAGCGGAGGGAGTAGTGCCGGCGGTTTCGGTGGCACTGGGCAGGT
CCTTCGCCATCTCCACTTTTTCGTGCATTTTATTGCTGTCATTGTCGCTG
TTACTGCCTTGGGAGTGCATGGACAGGGGTTTTTCCCTCATGGTAGTTGC
CCCCTGGGGGGAGGCTTTGATAGCTACATTGCTCTGTTGCTGCCCCTCGT
CCTCCTCCTCCTCCATATCCCCCTTCTCCGCCGACACAGTCACAGCGGAC
GTGTCGTCAGCCTCCAAAGTAGGTGCCGAAGCCGACTCAGTATTGTCCTC
CTCCTCCTCCTCCTCCTCCTCATTCAGCTCGCTCTTCTTCTTCCCCTCCT
TCTCCTGCTCAACCACCATGGCGGCGCTACGACGGCTACGGCTACTGCTA
CTGCTGGTGGTAGTGGTAGATGAAGCCTTCTTATTCCCACCAGCAGTGAC
ACTGCCCTTGCTGGAACGAGAGGAGGCTTTGCGGCCTACAGGGAGGGGAG
GGGGCATCTCCTCTGCCGCCGACAAGAAAGATGAAGTCGACGCAGAAGAC
ATCCCGCTACCCGCCTTTTTCTTTTTCCCTCCATGCTTCTCCGCCTTCAC
CTCTTCTTCCTCTTTCTCATCCTCACTCTCCCCCTCCTCCTCGTCCTCCT
CCATAATCTCAGGCAGCTCCGTCTCCTTCTCCCCTTCGATTTCCTCCATT
TCTAATGCCTCCTCCAATTTTTCCACCAACTGAGCTTTCAACCCCGCAGA
GGGCAAACCCCTTGCGCGCAACTCTCGCCGCAAATCAATCACACGGAGCT
TGCTCGGCACCAACGTCTCGCTACTTCCTTTGCCCTTGCTGCTGCCGCTG
CTTTCATTGTTGTCCTCCCCACCTTTTTCCTCTTCCTCTCTTTCCTCCGT
GGTCGTCGAGACCAGCTTGCGCTTGCTTCGCCGCCCACCACCACCACCAG
CGAGAGACGTCTCATCTGTAACAACAGTCGATGCGATAGACACGTTGTCC
TCCTCCTCGTCATCCGTCCCGACCGCTGCCGTACCCTTGGACGGGCGGGC
CCGGCCTGCATTGTCTTTGCTGCGCTTGGCTTTCCCCTGTTGCTGCTGCT
GCTCCTCGGCACAGGCTTCCACTTCCACATCCATTGCGGCTTCTTCCATT
TCTTCGCTCAGCACGCGGGCGCGGAGGCCTTGAAGGGCACCAGCCAGCCA
GCCTAGATTCTCCTTGTGCTCTTCCTCCAGCTGCTGCTTGGCCGTGCGGC
TCGTTTCAAAGAGCAAGTCCACCACCCGCTGAATGGTCGGCCCGCCCTTA
GCACTGGCATGGCTGGCGGTGCTATTTCGGTCGCTGCTGCTGGTATTGCT
GCTGCTGTTGCGGCTGCTGCGCGTCGCCATAACGATTGCCTGGTCGCTTA
CCGGCAGGGCGGGGAGAGATCGGGTGAGGGAGAGAGGGCGGATAAGACAA
TGTGGGAAAGCACTAACATAAGAGGCTTGATGAACCCAAGAAAGACACAA
CAGAGTCCTGTGCCTATATATGTGACAAGTGGTCACAGGGTTGTTGGGGT
TTGGCCGTGTCATGTTATGGTTGTTGGCTGTTAGGAAGCCGGCGGGACCT
TAACTTTGGGCCTTGTTGCGTGCGGGGGACGGTGGGGAGGCTAGAGCAGG
CGCTCTTCCTGGAAAAGCCACCATCACAACAACACATGAAATTAACAGGT
ATACAGAGGTATGGTCTTCTTCGTAGACAGCTAGAGCATGTGTCTTTATG
GCACAGCGTCCAAGGCATCAGCTTCAGTGCTGTAGAGATCGCTCCTTGA
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protein sequence of jgi.p|Nanoce1779_2|589932

>mRNA_5669-protein ID=mRNA_5669-protein|Name=jgi.p|Nanoce1779_2|589932|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MDRGFSLMVVAPWGEALIATLLCCCPSSSSSSISPFSADTVTADVSSASK
VGAEADSVLSSSSSSSSSFSSLFFFPSFSCSTTMAALRRLRLLLLLVVVV
DEAFLFPPAVTLPLLEREEALRPTGRGGGISSAADKKDEVDAEDIPLPAF
FFFPPCFSAFTSSSSFSSSLSPSSSSSSIISGSSVSFSPSISSISNASSN
FSTN*
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mRNA from alignment at scaffold_11:279215..281113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5669 ID=mRNA_5669|Name=jgi.p|Nanoce1779_2|589932|organism=Nannochloropsis oceanica|type=mRNA|length=1899bp|location=Sequence derived from alignment at scaffold_11:279215..281113- (Nannochloropsis oceanica)
AGGAGGAGGAAGCGGAGGAGGAGGCTGCAGAAGGGGTGGGGACAGGCGTG
GGGAGGGCGAATGGAGCAGCAATTGCGTTTTCTTTTCCTGCCGAAAGAAC
GTCATGAGCGGAGGGAGTAGTGCCGGCGGTTTCGGTGGCACTGGGCAGGT
CCTTCGCCATCTCCACTTTTTCGTGCATTTTATTGCTGTCATTGTCGCTG
TTACTGCCTTGGGAGTGCATGGACAGGGGTTTTTCCCTCATGGTAGTTGC
CCCCTGGGGGGAGGCTTTGATAGCTACATTGCTCTGTTGCTGCCCCTCGT
CCTCCTCCTCCTCCATATCCCCCTTCTCCGCCGACACAGTCACAGCGGAC
GTGTCGTCAGCCTCCAAAGTAGGTGCCGAAGCCGACTCAGTATTGTCCTC
CTCCTCCTCCTCCTCCTCCTCATTCAGCTCGCTCTTCTTCTTCCCCTCCT
TCTCCTGCTCAACCACCATGGCGGCGCTACGACGGCTACGGCTACTGCTA
CTGCTGGTGGTAGTGGTAGATGAAGCCTTCTTATTCCCACCAGCAGTGAC
ACTGCCCTTGCTGGAACGAGAGGAGGCTTTGCGGCCTACAGGGAGGGGAG
GGGGCATCTCCTCTGCCGCCGACAAGAAAGATGAAGTCGACGCAGAAGAC
ATCCCGCTACCCGCCTTTTTCTTTTTCCCTCCATGCTTCTCCGCCTTCAC
CTCTTCTTCCTCTTTCTCATCCTCACTCTCCCCCTCCTCCTCGTCCTCCT
CCATAATCTCAGGCAGCTCCGTCTCCTTCTCCCCTTCGATTTCCTCCATT
TCTAATGCCTCCTCCAATTTTTCCACCAACTGAGCTTTCAACCCCGCAGA
GGGCAAACCCCTTGCGCGCAACTCTCGCCGCAAATCAATCACACGGAGCT
TGCTCGGCACCAACGTCTCGCTACTTCCTTTGCCCTTGCTGCTGCCGCTG
CTTTCATTGTTGTCCTCCCCACCTTTTTCCTCTTCCTCTCTTTCCTCCGT
GGTCGTCGAGACCAGCTTGCGCTTGCTTCGCCGCCCACCACCACCACCAG
CGAGAGACGTCTCATCTGTAACAACAGTCGATGCGATAGACACGTTGTCC
TCCTCCTCGTCATCCGTCCCGACCGCTGCCGTACCCTTGGACGGGCGGGC
CCGGCCTGCATTGTCTTTGCTGCGCTTGGCTTTCCCCTGTTGCTGCTGCT
GCTCCTCGGCACAGGCTTCCACTTCCACATCCATTGCGGCTTCTTCCATT
TCTTCGCTCAGCACGCGGGCGCGGAGGCCTTGAAGGGCACCAGCCAGCCA
GCCTAGATTCTCCTTGTGCTCTTCCTCCAGCTGCTGCTTGGCCGTGCGGC
TCGTTTCAAAGAGCAAGTCCACCACCCGCTGAATGGTCGGCCCGCCCTTA
GCACTGGCATGGCTGGCGGTGCTATTTCGGTCGCTGCTGCTGGTATTGCT
GCTGCTGTTGCGGCTGCTGCGCGTCGCCATAACGATTGCCTGGTCGCTTA
CCGGCAGGGCGGGGAGAGATCGGGTGAGGGAGAGAGGGCGGATAAGACAA
TGTGGGAAAGCACTAACATAAGAGGCTTGATGAACCCAAGAAAGACACAA
CAGAGTCCTGTGCCTATATATGTGACAAGTGGTCACAGGGTTGTTGGGGT
TTGGCCGTGTCATGTTATGGTTGTTGGCTGTTAGGAAGCCGGCGGGACCT
TAACTTTGGGCCTTGTTGCGTGCGGGGGACGGTGGGGAGGCTAGAGCAGG
CGCTCTTCCTGGAAAAGCCACCATCACAACAACACATGAAATTAACAGGT
ATACAGAGGTATGGTCTTCTTCGTAGACAGCTAGAGCATGTGTCTTTATG
GCACAGCGTCCAAGGCATCAGCTTCAGTGCTGTAGAGATCGCTCCTTGA
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Coding sequence (CDS) from alignment at scaffold_11:279215..281113-

>mRNA_5669 ID=mRNA_5669|Name=jgi.p|Nanoce1779_2|589932|organism=Nannochloropsis oceanica|type=CDS|length=615bp|location=Sequence derived from alignment at scaffold_11:279215..281113- (Nannochloropsis oceanica)
ATGGACAGGGGTTTTTCCCTCATGGTAGTTGCCCCCTGGGGGGAGGCTTT
GATAGCTACATTGCTCTGTTGCTGCCCCTCGTCCTCCTCCTCCTCCATAT
CCCCCTTCTCCGCCGACACAGTCACAGCGGACGTGTCGTCAGCCTCCAAA
GTAGGTGCCGAAGCCGACTCAGTATTGTCCTCCTCCTCCTCCTCCTCCTC
CTCATTCAGCTCGCTCTTCTTCTTCCCCTCCTTCTCCTGCTCAACCACCA
TGGCGGCGCTACGACGGCTACGGCTACTGCTACTGCTGGTGGTAGTGGTA
GATGAAGCCTTCTTATTCCCACCAGCAGTGACACTGCCCTTGCTGGAACG
AGAGGAGGCTTTGCGGCCTACAGGGAGGGGAGGGGGCATCTCCTCTGCCG
CCGACAAGAAAGATGAAGTCGACGCAGAAGACATCCCGCTACCCGCCTTT
TTCTTTTTCCCTCCATGCTTCTCCGCCTTCACCTCTTCTTCCTCTTTCTC
ATCCTCACTCTCCCCCTCCTCCTCGTCCTCCTCCATAATCTCAGGCAGCT
CCGTCTCCTTCTCCCCTTCGATTTCCTCCATTTCTAATGCCTCCTCCAAT
TTTTCCACCAACTGA
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Synonyms
Publications