jgi.p|Nanoce1779_2|589927, mRNA_5667 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589927
Unique Name	mRNA_5667
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1125
Alignment location	scaffold_11:271789..273571 +

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Properties


Property Name	Value
TranscriptId	590013
Track	FilteredModels2
ProteinId	589927

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:271789..273571 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589927	gene_5667	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589927	mRNA_5667-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5667	CDS_5667	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:271789..273571+
coding sequence from alignment at scaffold_11:271789..273571+

mRNA sequence

>mRNA_5667 ID=mRNA_5667|Name=jgi.p|Nanoce1779_2|589927|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
AGGAGTCTTAAGCAGGTCACATAAATACTTTCCCTGAGGTGCCATGCCAT
TGCGTGCACTAGATGAGATTCAAGCCCACGTCTCGAAGGCGCAGTCCAGC
ATGACCCGTTTGACTTACGAGGCCCACCATCCGTCCCTCGACAAGCAGCG
AGTCGGGGCACAAGGCATGCACAAGATAGACCAGGTGGGACGCAATATAT
TAAGAAAGGACAAGCCGATACAATGCCTTGAAGCTGTTATGGTGGCGGCG
CACCTTACGACCAGATTACCCGTTCACCGACTGCCTCTAAGTTTCACGAC
GCGTGTGCTTCAGACGGGCCAGACACACAAGCACATTGTCCTTGCGCTGA
CCTCCGAGAGCCATCAGCGATGGGGAGCTATGGGAATGAGCCGATCTTCA
GAGCTCATGGACAAAGCTTTGATATTCGCGTCCTTCTCGGCACTGGTGGA
GGAATACCAACGTTCCTATTCTATGTGCGGGCACATCCTCGAATCGGTTC
TCGTGGGGCTGCCATTCTCTTCGAAGGCATCCTGCACACTACCTGTTGTC
TGGCAGGCCCTCAACATCGACTTGAAAGCACAGGGCGAAGACAAGAGAAA
CACACCGTCTTCCGTTCCCTCTACTTGGAAAGCAGTGCTCGATCATTACG
GGCAAAGCGTGCAGGCCTTGCTTGCGTTTCACCAACGGCACCCAGACAGC
AACCTGCCAAGTAGCCGTCTTTATGCGTGGCTTCAAGGCAAGAAGGCACG
GTTATGTTTCAAAGACTTGCTTATAATAAAAAACGGGGGGAAAGGAGACC
GGGGGGATGGTTGTGGTCGAATCAGCACGGGGAGAGGGAAGGGCGGGAAG
AGGAAGAGAGCGTGGCATGTGCCTTCCCCCTCGGGTGCATGATCTAAGAA
TAAATACTAATAAGAAGGGATGGAAAAGAAGCATTGTTGAGTTCCGTGTC
AACGCCTCTGTACCATTTTCTTACTTGCCTTGCAAACTTGCTTTGATATG
CACCTCACGTCTAGATATACACATCCGCCCCACACATGTCACCCCTCCCT
TCCTTTTTTCCTCCTTCCCCTCCTATCCCTCTCCCTCCCTCCCTCCTTCG
GAGGGAGGGAGGGAGGGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|589927

>mRNA_5667-protein ID=mRNA_5667-protein|Name=jgi.p|Nanoce1779_2|589927|organism=Nannochloropsis oceanica|type=polypeptide|length=283bp
MPLRALDEIQAHVSKAQSSMTRLTYEAHHPSLDKQRVGAQGMHKIDQVGR
NILRKDKPIQCLEAVMVAAHLTTRLPVHRLPLSFTTRVLQTGQTHKHIVL
ALTSESHQRWGAMGMSRSSELMDKALIFASFSALVEEYQRSYSMCGHILE
SVLVGLPFSSKASCTLPVVWQALNIDLKAQGEDKRNTPSSVPSTWKAVLD
HYGQSVQALLAFHQRHPDSNLPSSRLYAWLQGKKARLCFKDLLIIKNGGK
GDRGDGCGRISTGRGKGGKRKRAWHVPSPSGA*

mRNA from alignment at scaffold_11:271789..273571+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5667 ID=mRNA_5667|Name=jgi.p|Nanoce1779_2|589927|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp|location=Sequence derived from alignment at scaffold_11:271789..273571+ (Nannochloropsis oceanica)
AGGAGTCTTAAGCAGGTCACATAAATACTTTCCCTGAGGTGCCATGCCAT
TGCGTGCACTAGATGAGATTCAAGCCCACGTCTCGAAGGCGCAGTCCAGC
ATGACCCGTTTGACTTACGAGGCCCACCATCCGTCCCTCGACAAGCAGCG
AGTCGGGGCACAAGGCATGCACAAGATAGACCAGGTGGGACGCAATATAT
TAAGAAAGGACAAGCCGATACAATGCCTTGAAGCTGTTATGGTGGCGGCG
CACCTTACGACCAGATTACCCGTTCACCGACTGCCTCTAAGTTTCACGAC
GCGTGTGCTTCAGACGGGCCAGACACACAAGCACATTGTCCTTGCGCTGA
CCTCCGAGAGCCATCAGCGATGGGGAGCTATGGGAATGAGCCGATCTTCA
GAGCTCATGGACAAAGCTTTGATATTCGCGTCCTTCTCGGCACTGGTGGA
GGAATACCAACGTTCCTATTCTATGTGCGGGCACATCCTCGAATCGGTTC
TCGTGGGGCTGCCATTCTCTTCGAAGGCATCCTGCACACTACCTGTTGTC
TGGCAGGCCCTCAACATCGACTTGAAAGCACAGGGCGAAGACAAGAGAAA
CACACCGTCTTCCGTTCCCTCTACTTGGAAAGCAGTGCTCGATCATTACG
GGCAAAGCGTGCAGGCCTTGCTTGCGTTTCACCAACGGCACCCAGACAGC
AACCTGCCAAGTAGCCGTCTTTATGCGTGGCTTCAAGGCAAGAAGGCACG
GTTATGTTTCAAAGACTTGCTTATAATAAAAAACGGGGGGAAAGGAGACC
GGGGGGATGGTTGTGGTCGAATCAGCACGGGGAGAGGGAAGGGCGGGAAG
AGGAAGAGAGCGTGGCATGTGCCTTCCCCCTCGGGTGCATGATCTAAGAA
TAAATACTAATAAGAAGGGATGGAAAAGAAGCATTGTTGAGTTCCGTGTC
AACGCCTCTGTACCATTTTCTTACTTGCCTTGCAAACTTGCTTTGATATG
CACCTCACGTCTAGATATACACATCCGCCCCACACATGTCACCCCTCCCT
TCCTTTTTTCCTCCTTCCCCTCCTATCCCTCTCCCTCCCTCCCTCCTTCG
TCTCAACATCGCTCAAACACCTTATACAACTGCTCCAAGGCCGCAATCTG
CACTATCACCTGCGCTTGGGGTGCGGCTAACTCTCGGGGTGGAAGAAAAA
CGGACCGAAACGCCGGGTACAAGACATGCTGCAACATATACTCATACTTC
TTGGGCACAGGCCCTGTCTCCCCTTCCTCCTTCCCTCCCTCCTCCTTTTT
CTTCCTTCTTCTCCATTTCCCCTTCCCTTTCTCCTCCTCCCCCACAACTA
CCACCTCGTCGTCCGCCTCCTCTTCCTCCTTTTCCTCCCTTTTCTCACTC
CCCCCCTCCTCGTCCTTCCCATCCTCTTCCCCCTCTTCGTCCTCTTCGAA
ATGGCAGGACAAATCACTGTAATAAAGCCCGAGCTCCGTCGCCACGCCCT
CAAAACACACCTGCTCCTGCTCCCAATTCACCTCCGTGGCCAGCCTCAGC
AGAAACACGGGCAGGCCCGCAGGGGAAGGGGTGAAGCGAGGCAGCAAGTC
GGGGAGAGAGGTCAAGGCCCCTCTTCCCTCGTCAGCACAGGGGTCGAAGG
AGATGCGGTAATATTCGTCGAGCATCCCGGCTTTGGCAAGGAGGACTGCG
GCGGCCCGTTCGGCGAGCTGGTAGGGGAGAGAGGAAAGGAGGGAATGAGG
GAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGG

Coding sequence (CDS) from alignment at scaffold_11:271789..273571+

>mRNA_5667 ID=mRNA_5667|Name=jgi.p|Nanoce1779_2|589927|organism=Nannochloropsis oceanica|type=CDS|length=849bp|location=Sequence derived from alignment at scaffold_11:271789..273571+ (Nannochloropsis oceanica)
ATGCCATTGCGTGCACTAGATGAGATTCAAGCCCACGTCTCGAAGGCGCA
GTCCAGCATGACCCGTTTGACTTACGAGGCCCACCATCCGTCCCTCGACA
AGCAGCGAGTCGGGGCACAAGGCATGCACAAGATAGACCAGGTGGGACGC
AATATATTAAGAAAGGACAAGCCGATACAATGCCTTGAAGCTGTTATGGT
GGCGGCGCACCTTACGACCAGATTACCCGTTCACCGACTGCCTCTAAGTT
TCACGACGCGTGTGCTTCAGACGGGCCAGACACACAAGCACATTGTCCTT
GCGCTGACCTCCGAGAGCCATCAGCGATGGGGAGCTATGGGAATGAGCCG
ATCTTCAGAGCTCATGGACAAAGCTTTGATATTCGCGTCCTTCTCGGCAC
TGGTGGAGGAATACCAACGTTCCTATTCTATGTGCGGGCACATCCTCGAA
TCGGTTCTCGTGGGGCTGCCATTCTCTTCGAAGGCATCCTGCACACTACC
TGTTGTCTGGCAGGCCCTCAACATCGACTTGAAAGCACAGGGCGAAGACA
AGAGAAACACACCGTCTTCCGTTCCCTCTACTTGGAAAGCAGTGCTCGAT
CATTACGGGCAAAGCGTGCAGGCCTTGCTTGCGTTTCACCAACGGCACCC
AGACAGCAACCTGCCAAGTAGCCGTCTTTATGCGTGGCTTCAAGGCAAGA
AGGCACGGTTATGTTTCAAAGACTTGCTTATAATAAAAAACGGGGGGAAA
GGAGACCGGGGGGATGGTTGTGGTCGAATCAGCACGGGGAGAGGGAAGGG
CGGGAAGAGGAAGAGAGCGTGGCATGTGCCTTCCCCCTCGGGTGCATGA

Synonyms

Publications