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Properties
| Property Name | Value |
|---|
| TranscriptId | 625615 |
| Track | FilteredModels2 |
| ProteinId | 625529 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:266827..270368 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5666 ID=mRNA_5666|Name=jgi.p|Nanoce1779_2|625529|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
TAGGGCTTGAAACTGGGAGGGGAAGATCTGATGGGCCGAGGACTCAAGGG
TTACTCATTTTCTCCCCTGTATTTATGATCAGAGGCTATCATATTTAAGC
CGTCGCGAAATGGCATGTCATCTTGAGTGTTCTATCCTATGTCTTTTTTA
AATAGGGCTTCCATGTGTGGCTGTTGGCACGTAAAAATCGCGAAAACGAT
ACTACCGGCGAACAACCTCACGGCTCCATCGTCATGTCTTACTCCGCATT
CCCTTGCTTCGAAAAAGTCCCTCAAAGCGCATCCATCACGCAACCCGCAG
AAACGCTCACCCCCCCAAAAAGACGCAGGCTAGCGTGCTGTCCTTCCCCC
TCCCATGGTCCTTCACTACGAATGGGGCAGCACCATCGAAGCCTTGAGCG
ACGAGGACCTGCGCACGGCCGTACGGAGCGTTTTTGACCAGCTGGGGGCG
AAGCAAAACGTCCTCATCGTGCCCCCGGACTTCACTCGCTTCAATTCCAA
GGCAGGAGTGCTGACTCAGCATGCCTACGAGTACTATGGCGAGGCTTTGA
AGGATGTCCTTCCTGCCTTGGGGACGCATGACCCCGTCTCGGGACACCAG
CGCGAGCGAATGTTTGGAGCAGTGCCCGAGAGTTTGTTTCGTGTGCATGA
CTGGCGCAACGACGTGGTTACCATTGGTCATGTCCCTGCCGAGATGGTAC
GGGCCGCAAGCGATGGCAAATTGGACCAGCCTTGGCCGGCCCAATTGAAT
AAGCTGATGGTAGAGGGAGGGCATGACCTGGTCTTGTCCATCGGGCAGGT
GGTGCCACACGAAGTGCTGGGCATGGCCAATTACAATAAGAACTTGTTCG
TGGGGATTGGCGGAGCGGAAGCGATAAATTTGAGTCATTTCATTGGGGCG
GTGTATGGGATGGAGAGGATGATGGGGGTGGCAGATAATCCGTTGCGGCG
TGTGTTGAACCATGCTTCCGAAAAGTTCCTGGCTGGGACTTACCCCCTCT
TGTATATCCTCACCGTCATCGGACCTTCGCTGGAAAACCCTCGAGAGTTA
AAGACTCGTGGTTTATTCATCGGTGACGATGCCGAGTGCTTTTTCAAGGC
GGCCGCGTTGTCGATTCAGGTTAATTTTACACTGTTGGAAAAACCGGTAA
AGAAGGTCGTGGCCTATCTGGATGAGGAGGAGTTTCTATCGACTTGGCTA
GGGAATAAGGCTATCTATAGGACTCGAATGCTCATCGAGGATGGAGGGGA
GTTGTTGGTGTTGGCGCCGGGGGTGAAAAAGTTTGGGGAGGACGAGGCGA
TTGACGCGTTGATCCGCAAGTACGGTTATCGGACCACGCCGGAGCTGATG
TCCCTCCTCAAAGCCAATGATGAGCTCCAGCACAACCTCTCTGCGGTCGC
TCACCTCGTTCACGGCTCCAGCGAAGGCCGTTTCACGATCACATACGCCA
CTAATCCCGACGAGGGGGGCCTGACCCAGGGGGAGGTAGAAGGTGTGGGG
TATGGATGGAGGGACTACAGGGAAGCGATCAAACTTTATGACCCTCACAC
TATGACACAAGGAGTGAATGTCATGCGGAAGGAGAGAGGGGAAGGAGGCG
GAGGGGAGGAGGAAGAGGTGTATTTTGTTCAGGCTCCCGCGTTGGGCTTG
TGGGCGGCCAAAACGAGGTTTCAACGAGATTTGGATGGTGGCGGTGGTGG
TGGAAAATGTGTACTGTCGTTGTTTAGCGTGCGGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|625529 >mRNA_5666-protein ID=mRNA_5666-protein|Name=jgi.p|Nanoce1779_2|625529|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MVLHYEWGSTIEALSDEDLRTAVRSVFDQLGAKQNVLIVPPDFTRFNSKA
GVLTQHAYEYYGEALKDVLPALGTHDPVSGHQRERMFGAVPESLFRVHDW
RNDVVTIGHVPAEMVRAASDGKLDQPWPAQLNKLMVEGGHDLVLSIGQVV
PHEVLGMANYNKNLFVGIGGAEAINLSHFIGAVYGMERMMGVADNPLRRV
LNHASEKFLAGTYPLLYILTVIGPSLENPRELKTRGLFIGDDAECFFKAA
ALSIQVNFTLLEKPVKKVVAYLDEEEFLSTWLGNKAIYRTRMLIEDGGEL
LVLAPGVKKFGEDEAIDALIRKYGYRTTPELMSLLKANDELQHNLSAVAH
LVHGSSEGRFTITYATNPDEGGLTQGEVEGVGYGWRDYREAIKLYDPHTM
TQGVNVMRKERGEGGGGEEEEVYFVQAPALGLWAAKTRFQRDLDGGGGGG
KCVLSLFSVR* back to topmRNA from alignment at scaffold_11:266827..270368- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5666 ID=mRNA_5666|Name=jgi.p|Nanoce1779_2|625529|organism=Nannochloropsis oceanica|type=mRNA|length=3542bp|location=Sequence derived from alignment at scaffold_11:266827..270368- (Nannochloropsis oceanica)
TAGGGCTTGAAACTGGGAGGGGAAGATCTGATGGGCCGAGGACTCAAGGG
TTACTCATTTTCTCCCCTGTATTTATGATCAGAGGCTATCATATTTAAGC
CGTCGCGAAATGGCATGTCATCTTGAGTGTTCTATCCTATGTCTTTTTTA
AATAGGGCTTCCATGTGTGGCTGTTGGCACGTAAAAATCGCGAAAACGAT
ACTACCGGCGAACAACCTCACGGCTCCATCGTCATGTCTTACTCCGCATT
CCCTTGCTTCGAAAAAGTCCCTCAAAGCGCATCCATCACGCAACCCGCAG
AAACGCTCACCCCCCCAAAAAGACGCAGGCTAGCGTGCTGTCCTTCCCCC
TCCCATGGTCCTTCACTACGAATGGGGCAGCACCATCGAAGCCTTGAGCG
ACGAGGACCTGCGCACGGCCGTACGGAGCGTTTTTGACCAGCTGGGGGCG
AAGCAAAACGTCCTCATCGTGCCCCCGGACTTCACTCGCTTCAATTCCAA
GGCAGGAGTGCTGACTCAGCATGCCTACGAGTACTATGGCGAGGCTTTGA
AGGATGTCCTTCCTGCCTTGGGGACGCATGACCCCGTCTCGGGACACCAG
CGCGAGCGAATGTTTGGAGCAGTGCCCGAGAGTTTGTTTCGTGTGCATGA
CTGGCGCAACGACGTGGTTACCATTGGTCATGTCCCTGCCGAGATGGTAC
GGGCCGCAAGCGATGGCAAATTGGACCAGCCTTGGCCGGCCCAATTGAAT
AAGCTGATGGTAGAGGGAGGGCATGACCTGGTCTTGTCCATCGGGCAGGT
GGTGCCACACGAAGTGCTGGGCATGGCCAATTACAATAAGAACTTGTTCG
TGGGGATTGGCGGAGCGGAAGCGATAAATTTGAGTCATTTCATTGGGGCG
GTGTATGGGATGGAGAGGATGATGGGGGTGGCAGATAATCCGTTGCGGCG
TGTGTTGAACCATGCTTCCGAAAAGTTCCTGGCTGGGACTTACCCCCTCT
TGTATATCCTCACCGTCATCGGACCTTCGCTGGAAAACCCTCGAGAGTTA
AAGACTCGTGGTTTATTCATCGGTGACGATGCCGAGTGCTTTTTCAAGGC
GGCCGCGTTGTCGATTCAGGTTAATTTTACACTGTTGGAAAAACCGGTAA
AGAAGGTCGTGGCCTATCTGGATGAGGAGGAGTTTCTATCGACTTGGCTA
GGGAATAAGGCTATCTATAGGACTCGAATGCTCATCGAGGATGGAGGGGA
GTTGTTGGTGTTGGCGCCGGGGGTGAAAAAGTTTGGGGAGGACGAGGCGA
TTGACGCGTTGATCCGGTAAATGCAAGGGAGGGGTGAAGGAAGGGTGGGA
GGGTAGAGGAGTAAAAAGAAAGGGTTTGTGCGCCTTAAAATACCGATCGC
TTTTCCGATCATCCATGTAAACGATACTGAGTTACGTGCATTTAATCATA
CCTCCCTCCCTCCCTTTTCCTCTTCCTTCCTTTTTGTTTCCCTTTCTCCC
CATCCTCTAGCAAGTACGGTTATCGGACCACGCCGGAGCTGATGTCCCTC
CTCAAAGCCAATGATGAGCTCCAGCACAACCTCTCTGCGGTCGCTCACCT
CGTTCACGGCTCCAGCGAAGGCCGTTTCACGATCACATACGCCACTAATC
CCGACGAGGGGGGCCTGACCCAGGGGGAGGTAGAAGGTGTGGGGTATGGA
TGGAGGGACTACAGGGAAGCGATCAAACTTTATGACCCTCACACTATGAC
ACAAGGAGTGAATGTCATGCGGAAGGAGAGAGGGGAAGGAGGCGGAGGGG
AGGAGGAAGAGGTGTATTTTGTTCAGGCTCCCGCGTTGGGCTTGTGGGCG
GCCAAAACGAGGTTTCAACGAGATTTGGATGGTGGCGGTGGTGGTGGAAA
AGTAGGAACAGGAGGAGGAGAAGGAACAGCGGGATTGGAGGGAGGAAAGG
AGGAAGAGAGGATACCTGCCACGGCCTCGACGTTGTCGCCTGTGCGAGAG
CGGCCGACCAAGAGAACCAAGGGCGGAGAGGGGGAAGAGAAGGAGGAAGA
GGGAGGGGGGGGGGGGTCGTGTCGGTTCTAGTGGCACTGCTGTGTAGAAA
GAGGCAGAAGCGCGAGGAGGAGCGTAGGGAAGGAGGGGAGGAGGCGGACG
GACGGAAGGAGGGTGCTTTGATTCACTGTGCATCGGCTAGGCTTCCTCTT
CTCTTCTTCCTCTTTTTCGTCATTCCGAAGTATGACACCCGTTCCCACGG
CCGGAAGAAGGAAAAATGAGGGATTTATAATTTAATTGGACTGAATTGGC
CGGGCAATCTGCCCGCATGTATGACCCCTCCCCGGCTACGCTTGCCCTCG
GCAACACCACCGCTAGAGCCAGTGGAAGGAAGAAGACGACATGTAGAGAA
TGGACACGCACACATCAAGTGAACGCTCACGCACATCCAAAGACAACAAA
ACGAAAAGAGAGCAATCAATCGCCGACCCCTTTCTTTGCTCTCGTTTCCT
TCTTTTGCTCTCCCTAACTCTCCCTCCCCCTCCCTCCCCCCATCCTCCTC
GCGCTCGCCGGGTTCACATTCGTCTTAAATTGTCAGCTCCATGATGGCAT
TGACGATATCCCCCTCGTTCTTCTTCAATGCCCCCACGGCCCTCGCCCGC
GAGCACCCAGCTTGGCTCATGACCAGCTCAATATCCTTGGCTTCCACCCC
CGTTTCGTCTACATCCCCTTCCTCCTCTACTACGCCCGAGGGGATCCCCC
CTCCACCCCCAGCAGCAGCTGCCGCCGCCGCCATTGCACCCTGAGGCATA
GACATGGGCTCACGGGAGAACTGCGCGGCCGCAGCGCTTTGGGCCTGAGC
TCCCAGGTCCTCGAGCTTGGCCTCACCAAACACGATATAAGTGTCCGAGA
CAGGGGACTTAAAGACGTCAGGCTGACCGATGACGAACAAGATGTTCTTG
CTCTTCTTGACCGTGACGCGGGCAATGCCAGGGACTGGTTTCATGCCCTG
ATGTACAAGGGAGGGTATGAAGGGAGGGAGGGAAGAAAGGGAGGGAGGAA
AGGGAGAAAGGGAGGGAGCGTGAATGGAAGGCGAAATTTGGTACGACCGA
GCTAGACAACATGCAGATACGAGACACGAAATATGTGATGAATAGGAGGA
GGGCTAGGCAGGTCAACCACCAAACATCTCTACCTCAAAGGAAGGACAAA
ATCCACGCAAGGTACATGTCCTTTCCCCTTCTCTCTGCCCTTCAGACCTC
CTGAATCCCCATCTCCGCCTCTCTTGAACACCCAAGCACTCCGCATTTAA
TTTCCCCTTTCCCTCTCTCTATTCACGACGTACCAGCTTCTGGACGGCCT
TTCGGCTCTTCTTCTCGCTGCGGCTTTGCTTGCCACCCTTGCCACCTGCC
TCTTCTTCCTCATCGGAGCCCTCCTCCGACTCCTCCTCCTCCTCCTCTTC
GCTCTCCTCCACCACCTTGGGCTCTTGCTCCTTGGCCATGATTTTCTGTG
TTGTCTTCCTAGTGTGTACTGTCGTTGTTTAGCGTGCGGTGA back to topCoding sequence (CDS) from alignment at scaffold_11:266827..270368- >mRNA_5666 ID=mRNA_5666|Name=jgi.p|Nanoce1779_2|625529|organism=Nannochloropsis oceanica|type=CDS|length=4149bp|location=Sequence derived from alignment at scaffold_11:266827..270368- (Nannochloropsis oceanica)
TGTGTACTGTCGTTGTTTAGCGTGCGGTGACAAGTACGGTTATCGGACCA
CGCCGGAGCTGATGTCCCTCCTCAAAGCCAATGATGAGCTCCAGCACAAC
CTCTCTGCGGTCGCTCACCTCGTTCACGGCTCCAGCGAAGGCCGTTTCAC
GATCACATACGCCACTAATCCCGACGAGGGGGGCCTGACCCAGGGGGAGG
TAGAAGGTGTGGGGTATGGATGGAGGGACTACAGGGAAGCGATCAAACTT
TATGACCCTCACACTATGACACAAGGAGTGAATGTCATGCGGAAGGAGAG
AGGGGAAGGAGGCGGAGGGGAGGAGGAAGAGGTGTATTTTGTTCAGGCTC
CCGCGTTGGGCTTGTGGGCGGCCAAAACGAGGTTTCAACGAGATTTGGAT
GGTGGCGGTGGTGGTGGAAAAATGGTCCTTCACTACGAATGGGGCAGCAC
CATCGAAGCCTTGAGCGACGAGGACCTGCGCACGGCCGTACGGAGCGTTT
TTGACCAGCTGGGGGCGAAGCAAAACGTCCTCATCGTGCCCCCGGACTTC
ACTCGCTTCAATTCCAAGGCAGGAGTGCTGACTCAGCATGCCTACGAGTA
CTATGGCGAGGCTTTGAAGGATGTCCTTCCTGCCTTGGGGACGCATGACC
CCGTCTCGGGACACCAGCGCGAGCGAATGTTTGGAGCAGTGCCCGAGAGT
TTGTTTCGTGTGCATGACTGGCGCAACGACGTGGTTACCATTGGTCATGT
CCCTGCCGAGATGGTACGGGCCGCAAGCGATGGCAAATTGGACCAGCCTT
GGCCGGCCCAATTGAATAAGCTGATGGTAGAGGGAGGGCATGACCTGGTC
TTGTCCATCGGGCAGGTGGTGCCACACGAAGTGCTGGGCATGGCCAATTA
CAATAAGAACTTGTTCGTGGGGATTGGCGGAGCGGAAGCGATAAATTTGA
GTCATTTCATTGGGGCGGTGTATGGGATGGAGAGGATGATGGGGGTGGCA
GATAATCCGTTGCGGCGTGTGTTGAACCATGCTTCCGAAAAGTTCCTGGC
TGGGACTTACCCCCTCTTGTATATCCTCACCGTCATCGGACCTTCGCTGG
AAAACCCTCGAGAGTTAAAGACTCGTGGTTTATTCATCGGTGACGATGCC
GAGTGCTTTTTCAAGGCGGCCGCGTTGTCGATTCAGGTTAATTTTACACT
GTTGGAAAAACCGGTAAAGAAGGTCGTGGCCTATCTGGATGAGGAGGAGT
TTCTATCGACTTGGCTAGGGAATAAGGCTATCTATAGGACTCGAATGCTC
ATCGAGGATGGAGGGGAGTTGTTGGTGTTGGCGCCGGGGGTGAAAAAGTT
TGGGGAGGACGAGGCGATTGACGCGTTGATCCGTGTGTACTGTCGTTGTT
TAGCGTGCGGTGACAAGTACGGTTATCGGACCACGCCGGAGCTGATGTCC
CTCCTCAAAGCCAATGATGAGCTCCAGCACAACCTCTCTGCGGTCGCTCA
CCTCGTTCACGGCTCCAGCGAAGGCCGTTTCACGATCACATACGCCACTA
ATCCCGACGAGGGGGGCCTGACCCAGGGGGAGGTAGAAGGTGTGGGGTAT
GGATGGAGGGACTACAGGGAAGCGATCAAACTTTATGACCCTCACACTAT
GACACAAGGAGTGAATGTCATGCGGAAGGAGAGAGGGGAAGGAGGCGGAG
GGGAGGAGGAAGAGGTGTATTTTGTTCAGGCTCCCGCGTTGGGCTTGTGG
GCGGCCAAAACGAGGTTTCAACGAGATTTGGATGGTGGCGGTGGTGGTGG
AAAAATGGTCCTTCACTACGAATGGGGCAGCACCATCGAAGCCTTGAGCG
ACGAGGACCTGCGCACGGCCGTACGGAGCGTTTTTGACCAGCTGGGGGCG
AAGCAAAACGTCCTCATCGTGCCCCCGGACTTCACTCGCTTCAATTCCAA
GGCAGGAGTGCTGACTCAGCATGCCTACGAGTACTATGGCGAGGCTTTGA
AGGATGTCCTTCCTGCCTTGGGGACGCATGACCCCGTCTCGGGACACCAG
CGCGAGCGAATGTTTGGAGCAGTGCCCGAGAGTTTGTTTCGTGTGCATGA
CTGGCGCAACGACGTGGTTACCATTGGTCATGTCCCTGCCGAGATGGTAC
GGGCCGCAAGCGATGGCAAATTGGACCAGCCTTGGCCGGCCCAATTGAAT
AAGCTGATGGTAGAGGGAGGGCATGACCTGGTCTTGTCCATCGGGCAGGT
GGTGCCACACGAAGTGCTGGGCATGGCCAATTACAATAAGAACTTGTTCG
TGGGGATTGGCGGAGCGGAAGCGATAAATTTGAGTCATTTCATTGGGGCG
GTGTATGGGATGGAGAGGATGATGGGGGTGGCAGATAATCCGTTGCGGCG
TGTGTTGAACCATGCTTCCGAAAAGTTCCTGGCTGGGACTTACCCCCTCT
TGTATATCCTCACCGTCATCGGACCTTCGCTGGAAAACCCTCGAGAGTTA
AAGACTCGTGGTTTATTCATCGGTGACGATGCCGAGTGCTTTTTCAAGGC
GGCCGCGTTGTCGATTCAGGTTAATTTTACACTGTTGGAAAAACCGGTAA
AGAAGGTCGTGGCCTATCTGGATGAGGAGGAGTTTCTATCGACTTGGCTA
GGGAATAAGGCTATCTATAGGACTCGAATGCTCATCGAGGATGGAGGGGA
GTTGTTGGTGTTGGCGCCGGGGGTGAAAAAGTTTGGGGAGGACGAGGCGA
TTGACGCGTTGATCCGTGTGTACTGTCGTTGTTTAGCGTGCGGTGACAAG
TACGGTTATCGGACCACGCCGGAGCTGATGTCCCTCCTCAAAGCCAATGA
TGAGCTCCAGCACAACCTCTCTGCGGTCGCTCACCTCGTTCACGGCTCCA
GCGAAGGCCGTTTCACGATCACATACGCCACTAATCCCGACGAGGGGGGC
CTGACCCAGGGGGAGGTAGAAGGTGTGGGGTATGGATGGAGGGACTACAG
GGAAGCGATCAAACTTTATGACCCTCACACTATGACACAAGGAGTGAATG
TCATGCGGAAGGAGAGAGGGGAAGGAGGCGGAGGGGAGGAGGAAGAGGTG
TATTTTGTTCAGGCTCCCGCGTTGGGCTTGTGGGCGGCCAAAACGAGGTT
TCAACGAGATTTGGATGGTGGCGGTGGTGGTGGAAAAATGGTCCTTCACT
ACGAATGGGGCAGCACCATCGAAGCCTTGAGCGACGAGGACCTGCGCACG
GCCGTACGGAGCGTTTTTGACCAGCTGGGGGCGAAGCAAAACGTCCTCAT
CGTGCCCCCGGACTTCACTCGCTTCAATTCCAAGGCAGGAGTGCTGACTC
AGCATGCCTACGAGTACTATGGCGAGGCTTTGAAGGATGTCCTTCCTGCC
TTGGGGACGCATGACCCCGTCTCGGGACACCAGCGCGAGCGAATGTTTGG
AGCAGTGCCCGAGAGTTTGTTTCGTGTGCATGACTGGCGCAACGACGTGG
TTACCATTGGTCATGTCCCTGCCGAGATGGTACGGGCCGCAAGCGATGGC
AAATTGGACCAGCCTTGGCCGGCCCAATTGAATAAGCTGATGGTAGAGGG
AGGGCATGACCTGGTCTTGTCCATCGGGCAGGTGGTGCCACACGAAGTGC
TGGGCATGGCCAATTACAATAAGAACTTGTTCGTGGGGATTGGCGGAGCG
GAAGCGATAAATTTGAGTCATTTCATTGGGGCGGTGTATGGGATGGAGAG
GATGATGGGGGTGGCAGATAATCCGTTGCGGCGTGTGTTGAACCATGCTT
CCGAAAAGTTCCTGGCTGGGACTTACCCCCTCTTGTATATCCTCACCGTC
ATCGGACCTTCGCTGGAAAACCCTCGAGAGTTAAAGACTCGTGGTTTATT
CATCGGTGACGATGCCGAGTGCTTTTTCAAGGCGGCCGCGTTGTCGATTC
AGGTTAATTTTACACTGTTGGAAAAACCGGTAAAGAAGGTCGTGGCCTAT
CTGGATGAGGAGGAGTTTCTATCGACTTGGCTAGGGAATAAGGCTATCTA
TAGGACTCGAATGCTCATCGAGGATGGAGGGGAGTTGTTGGTGTTGGCGC
CGGGGGTGAAAAAGTTTGGGGAGGACGAGGCGATTGACGCGTTGATCCG back to top
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