jgi.p|Nanoce1779_2|528499, mRNA_5664 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|528499
Unique NamemRNA_5664
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1179
Alignment locationscaffold_11:258448..259626 -

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Properties
Property NameValue
TranscriptId528585
TrackFilteredModels2
ProteinId528499
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:258448..259626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528499gene_5664Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5664CDS_5664Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|528499mRNA_5664-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5664 ID=mRNA_5664|Name=jgi.p|Nanoce1779_2|528499|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
ATGTCTAGCCTCGAAAATGTACGTCCCTTATACACATTGAGGCATCCACA
CATCATCTGTCCATCCTGTATTTCGTCTTGTGATTTCTCCATCCCGATCT
CTTTCCAACGCACTCACTTCCCCCTCCCTCCCTCCCTCCCTCCCCCCCTC
CCTCCCTCGCAGTCTCCCCCCATATACCTAAAGCTTGACGTCTTACAACC
TTCCGGCTCCTTTAAAGACCGAGGTATGGCTACGCTCTGCGCCTCTCTGC
AGCAGCAAGGTGCGCGTCGCCTTATTTCCTCCTCGGGGGGGAACGCTGGC
TTGAGCGCCGCATTGTGTGGGCGTATCTTGAATCTCCCAGTGAGGGTGAT
TGTCCCCACGACGACCAAGCCTTTAATGCTGGAGAAAATTAGGGCTCAAG
GCGCGGAAGTGGAGGTATTTGGGAACAATTGGAATGAGGCCGATGCCCGG
GCACGGTGGCTGGTGGAGAAGGGAGGGAGGGAGGGGGGGGAAGACGGGGA
GGGAGGGCAGGCGGCGTACATTCCGCCGTACGACCACCCTCTCTTGTGGC
AGGGACACAGTTCTCTGGTGGATGAGTTAGTGGAAAGTGGAATCGAGAAA
CCGGCCGCCATCGTGGCGAGTGTGGGGGGAGGCGGGTTGTTGTGTGGCAT
TTTTGAAGGACTCAGCAGGTATGAGAAGGGGGAGGACGGGAGGGAGGGCT
GGGCGGACGTAGGGGTGGTAGGAGCAGAGACGGAGGGCGCTGCGTCGTTT
GCGGCCGGGATGGCGGCAGGGAAGGTGGTGAGGTTGGAAGGGATTTCGTC
TCTGGCTACCTCCCTGGGGGCCTTGGAGGTGACTCCGCAGGCACTCGCAT
ACGCGTTGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAAGGA
GGGGTGGGGAGTGGGGAGAGGGTAATCTTGAGCGAGGTGGTTAGTGATAA
GGACGCGGTACATGCTTGTAGGAGATTTCTGCAAGACCATCGGCTTTTGG
TTGAGCCGGCGTGTGGCGCGGCGCTGGCGTTGGTGTATTCGAAGAGGGGC
AGGGAGAGACTGAAGGCCCTGTCAGACGCCAAGGGGGGAAAGCCGGTGGT
GGTGGTGGTGTGTGGGGGCAGTGGGATCACGCCAGAAATACTGGCAGAGA
TGGAGAGGAGCCTTGGGTTGGCGGCATGA
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protein sequence of jgi.p|Nanoce1779_2|528499

>mRNA_5664-protein ID=mRNA_5664-protein|Name=jgi.p|Nanoce1779_2|528499|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MSSLENVRPLYTLRHPHIICPSCISSCDFSIPISFQRTHFPLPPSLPPPL
PPSQSPPIYLKLDVLQPSGSFKDRGMATLCASLQQQGARRLISSSGGNAG
LSAALCGRILNLPVRVIVPTTTKPLMLEKIRAQGAEVEVFGNNWNEADAR
ARWLVEKGGREGGEDGEGGQAAYIPPYDHPLLWQGHSSLVDELVESGIEK
PAAIVASVGGGGLLCGIFEGLSRYEKGEDGREGWADVGVVGAETEGAASF
AAGMAAGKVVRLEGISSLATSLGALEVTPQALAYALKGGREGGREGGREG
GVGSGERVILSEVVSDKDAVHACRRFLQDHRLLVEPACGAALALVYSKRG
RERLKALSDAKGGKPVVVVVCGGSGITPEILAEMERSLGLAA*
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mRNA from alignment at scaffold_11:258448..259626-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5664 ID=mRNA_5664|Name=jgi.p|Nanoce1779_2|528499|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at scaffold_11:258448..259626- (Nannochloropsis oceanica)
ATGTCTAGCCTCGAAAATGTACGTCCCTTATACACATTGAGGCATCCACA
CATCATCTGTCCATCCTGTATTTCGTCTTGTGATTTCTCCATCCCGATCT
CTTTCCAACGCACTCACTTCCCCCTCCCTCCCTCCCTCCCTCCCCCCCTC
CCTCCCTCGCAGTCTCCCCCCATATACCTAAAGCTTGACGTCTTACAACC
TTCCGGCTCCTTTAAAGACCGAGGTATGGCTACGCTCTGCGCCTCTCTGC
AGCAGCAAGGTGCGCGTCGCCTTATTTCCTCCTCGGGGGGGAACGCTGGC
TTGAGCGCCGCATTGTGTGGGCGTATCTTGAATCTCCCAGTGAGGGTGAT
TGTCCCCACGACGACCAAGCCTTTAATGCTGGAGAAAATTAGGGCTCAAG
GCGCGGAAGTGGAGGTATTTGGGAACAATTGGAATGAGGCCGATGCCCGG
GCACGGTGGCTGGTGGAGAAGGGAGGGAGGGAGGGGGGGGAAGACGGGGA
GGGAGGGCAGGCGGCGTACATTCCGCCGTACGACCACCCTCTCTTGTGGC
AGGGACACAGTTCTCTGGTGGATGAGTTAGTGGAAAGTGGAATCGAGAAA
CCGGCCGCCATCGTGGCGAGTGTGGGGGGAGGCGGGTTGTTGTGTGGCAT
TTTTGAAGGACTCAGCAGGTATGAGAAGGGGGAGGACGGGAGGGAGGGCT
GGGCGGACGTAGGGGTGGTAGGAGCAGAGACGGAGGGCGCTGCGTCGTTT
GCGGCCGGGATGGCGGCAGGGAAGGTGGTGAGGTTGGAAGGGATTTCGTC
TCTGGCTACCTCCCTGGGGGCCTTGGAGGTGACTCCGCAGGCACTCGCAT
ACGCGTTGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAAGGA
GGGGTGGGGAGTGGGGAGAGGGTAATCTTGAGCGAGGTGGTTAGTGATAA
GGACGCGGTACATGCTTGTAGGAGATTTCTGCAAGACCATCGGCTTTTGG
TTGAGCCGGCGTGTGGCGCGGCGCTGGCGTTGGTGTATTCGAAGAGGGGC
AGGGAGAGACTGAAGGCCCTGTCAGACGCCAAGGGGGGAAAGCCGGTGGT
GGTGGTGGTGTGTGGGGGCAGTGGGATCACGCCAGAAATACTGGCAGAGA
TGGAGAGGAGCCTTGGGTTGGCGGCATGA
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Coding sequence (CDS) from alignment at scaffold_11:258448..259626-

>mRNA_5664 ID=mRNA_5664|Name=jgi.p|Nanoce1779_2|528499|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_11:258448..259626- (Nannochloropsis oceanica)
ATGTCTAGCCTCGAAAATGTACGTCCCTTATACACATTGAGGCATCCACA
CATCATCTGTCCATCCTGTATTTCGTCTTGTGATTTCTCCATCCCGATCT
CTTTCCAACGCACTCACTTCCCCCTCCCTCCCTCCCTCCCTCCCCCCCTC
CCTCCCTCGCAGTCTCCCCCCATATACCTAAAGCTTGACGTCTTACAACC
TTCCGGCTCCTTTAAAGACCGAGGTATGGCTACGCTCTGCGCCTCTCTGC
AGCAGCAAGGTGCGCGTCGCCTTATTTCCTCCTCGGGGGGGAACGCTGGC
TTGAGCGCCGCATTGTGTGGGCGTATCTTGAATCTCCCAGTGAGGGTGAT
TGTCCCCACGACGACCAAGCCTTTAATGCTGGAGAAAATTAGGGCTCAAG
GCGCGGAAGTGGAGGTATTTGGGAACAATTGGAATGAGGCCGATGCCCGG
GCACGGTGGCTGGTGGAGAAGGGAGGGAGGGAGGGGGGGGAAGACGGGGA
GGGAGGGCAGGCGGCGTACATTCCGCCGTACGACCACCCTCTCTTGTGGC
AGGGACACAGTTCTCTGGTGGATGAGTTAGTGGAAAGTGGAATCGAGAAA
CCGGCCGCCATCGTGGCGAGTGTGGGGGGAGGCGGGTTGTTGTGTGGCAT
TTTTGAAGGACTCAGCAGGTATGAGAAGGGGGAGGACGGGAGGGAGGGCT
GGGCGGACGTAGGGGTGGTAGGAGCAGAGACGGAGGGCGCTGCGTCGTTT
GCGGCCGGGATGGCGGCAGGGAAGGTGGTGAGGTTGGAAGGGATTTCGTC
TCTGGCTACCTCCCTGGGGGCCTTGGAGGTGACTCCGCAGGCACTCGCAT
ACGCGTTGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAAGGA
GGGGTGGGGAGTGGGGAGAGGGTAATCTTGAGCGAGGTGGTTAGTGATAA
GGACGCGGTACATGCTTGTAGGAGATTTCTGCAAGACCATCGGCTTTTGG
TTGAGCCGGCGTGTGGCGCGGCGCTGGCGTTGGTGTATTCGAAGAGGGGC
AGGGAGAGACTGAAGGCCCTGTCAGACGCCAAGGGGGGAAAGCCGGTGGT
GGTGGTGGTGTGTGGGGGCAGTGGGATCACGCCAGAAATACTGGCAGAGA
TGGAGAGGAGCCTTGGGTTGGCGGCATGA
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Synonyms
Publications