jgi.p|Nanoce1779_2|566019, mRNA_5663 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566019
Unique NamemRNA_5663
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length360
Alignment locationscaffold_11:256638..257727 +

Link to JBrowse

Properties
Property NameValue
TranscriptId566105
TrackFilteredModels2
ProteinId566019
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:256638..257727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566019gene_5663Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566019mRNA_5663-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5663CDS_5663Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5663 ID=mRNA_5663|Name=jgi.p|Nanoce1779_2|566019|organism=Nannochloropsis oceanica|type=mRNA|length=360bp
ATGCAGCAAGTGCTCTTTGTCGAGGTTGGTTTCGGCAGCGACCAGCACGG
ACAAGACGCCACCAAGGCAGCTATTAAAGCCTGTCGCAGCGCCATTGAGT
GGAACTCCCTCCCTTCCATAAATCAGATCGTCCCTGGAGGTTACGATGGC
ATGAAAGTGCGAGTCCAACTCGCCGTCCCCGTCGACGCCAAAGACATTGA
CACCGAGGCCGTGAAAAAAGTTTTCCCGTACGGTCAACTATTGCCGATTG
AGATTCAGCGGGGAGGGATGCGGGCTTCGAGCGGCATTGCGCTGCCGGCC
ATGGGGGATAAGAACGACGATTGGATCATTGCCGTTGCAGCTGTAACGGT
GGGATGGTAG
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protein sequence of jgi.p|Nanoce1779_2|566019

>mRNA_5663-protein ID=mRNA_5663-protein|Name=jgi.p|Nanoce1779_2|566019|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MQQVLFVEVGFGSDQHGQDATKAAIKACRSAIEWNSLPSINQIVPGGYDG
MKVRVQLAVPVDAKDIDTEAVKKVFPYGQLLPIEIQRGGMRASSGIALPA
MGDKNDDWIIAVAAVTVGW*
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mRNA from alignment at scaffold_11:256638..257727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5663 ID=mRNA_5663|Name=jgi.p|Nanoce1779_2|566019|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at scaffold_11:256638..257727+ (Nannochloropsis oceanica)
ATGCAGCAAGTGCTCTTTGTCGAGGTAAGGATGAGGCTTCGGCATAGCAG
CTTTATTTCGTGACGCCCAAAATGACTTGAGGGAGAGCCTTCGCCGCAGT
ACTATGCATGAGGCGTGACATAAAAGTGCTTGAACATGCATGAATAAAGG
TATAGATGGTTTGATAGGGTATATATATCTTAGTTATGGTGTAAATGCAG
GTGGCAGGATTTACAAGGCAGTGCAAAGCGTGCTGTAATCAGAATCACAC
CTCAAAGTTCTCCTCTCGTCCCTCTCCCCCCTACATTCCCATCACTGCCT
ACCGGAACAACACACACATGCCTTATACATCCAATTACCGTCTCTCCAGG
TTGGTTTCGGCAGCGACCAGCACGGACAAGACGCCACCAAGGCAGCTATT
AAAGCCTGTCGCAGCGCCATTGAGTGGAACTCCCTCCCTTCCATAAATCA
GATCGTCCCTGGAGGTTACGATGGCATGAAAGTACGTTGATTATCTGGTT
GGTGTGATGATTTCGAAATTCGGCTCTAACCCCGTCTTAACTCACATTCC
GTCTATGTTTTGTGCACGCCTCCGTATACTTAAATCGTGAATCCGTCTAA
TAACCTTTTGACGTCTGCTCTCCTCTCCCTCGCTCAGTCGCTCTTAACTC
TATTCCTCCTACCGTGCGTTTTTTGCAGTCGTCATTGAGTCGACCTTGTT
TGAATAAACACCAGATCTTTGGGATTAGCAAGTCTATATTGACAACCGAT
GGCAGATTATGTGACTCTCATTATCTTATCTAACTCTTCTCAGCCATCTC
TTCGCCTCTTTCCCTCCCTTACTCCCTTTCCTTCCCTTTTTACCCTTCTA
ATCAAACTTCCTCTCCTCTTTTCTTTCCTTCCCGAGGTGCGAGTCCAACT
CGCCGTCCCCGTCGACGCCAAAGACATTGACACCGAGGCCGTGAAAAAAG
TTTTCCCGTACGGTCAACTATTGCCGATTGAGATTCAGCGGGGAGGGATG
CGGGCTTCGAGCGGCATTGCGCTGCCGGCCATGGGGGATAAGAACGACGA
TTGGATCATTGCCGTTGCAGCTGTAACGGTGGGATGGTAG
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Coding sequence (CDS) from alignment at scaffold_11:256638..257727+

>mRNA_5663 ID=mRNA_5663|Name=jgi.p|Nanoce1779_2|566019|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_11:256638..257727+ (Nannochloropsis oceanica)
ATGCAGCAAGTGCTCTTTGTCGAGGTTGGTTTCGGCAGCGACCAGCACGG
ACAAGACGCCACCAAGGCAGCTATTAAAGCCTGTCGCAGCGCCATTGAGT
GGAACTCCCTCCCTTCCATAAATCAGATCGTCCCTGGAGGTTACGATGGC
ATGAAAGTGCGAGTCCAACTCGCCGTCCCCGTCGACGCCAAAGACATTGA
CACCGAGGCCGTGAAAAAAGTTTTCCCGTACGGTCAACTATTGCCGATTG
AGATTCAGCGGGGAGGGATGCGGGCTTCGAGCGGCATTGCGCTGCCGGCC
ATGGGGGATAAGAACGACGATTGGATCATTGCCGTTGCAGCTGTAACGGT
GGGATGGTAGATGCAGCAAGTGCTCTTTGTCGAGGTTGGTTTCGGCAGCG
ACCAGCACGGACAAGACGCCACCAAGGCAGCTATTAAAGCCTGTCGCAGC
GCCATTGAGTGGAACTCCCTCCCTTCCATAAATCAGATCGTCCCTGGAGG
TTACGATGGCATGAAAGTGCGAGTCCAACTCGCCGTCCCCGTCGACGCCA
AAGACATTGACACCGAGGCCGTGAAAAAAGTTTTCCCGTACGGTCAACTA
TTGCCGATTGAGATTCAGCGGGGAGGGATGCGGGCTTCGAGCGGCATTGC
GCTGCCGGCCATGGGGGATAAGAACGACGATTGGATCATTGCCGTTGCAG
CTGTAACGGTGGGATGGTAGATGCAGCAAGTGCTCTTTGTCGAGGTTGGT
TTCGGCAGCGACCAGCACGGACAAGACGCCACCAAGGCAGCTATTAAAGC
CTGTCGCAGCGCCATTGAGTGGAACTCCCTCCCTTCCATAAATCAGATCG
TCCCTGGAGGTTACGATGGCATGAAAGTGCGAGTCCAACTCGCCGTCCCC
GTCGACGCCAAAGACATTGACACCGAGGCCGTGAAAAAAGTTTTCCCGTA
CGGTCAACTATTGCCGATTGAGATTCAGCGGGGAGGGATGCGGGCTTCGA
GCGGCATTGCGCTGCCGGCCATGGGGGATAAGAACGACGATTGGATCATT
GCCGTTGCAGCTGTAACGGTGGGATGGTAG
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Synonyms
Publications