jgi.p|Nanoce1779_2|589884, mRNA_5661 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589884
Unique NamemRNA_5661
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1302
Alignment locationscaffold_11:248963..250449 +

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Properties
Property NameValue
TranscriptId589970
TrackFilteredModels2
ProteinId589884
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:248963..250449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589884gene_5661Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589884mRNA_5661-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5661CDS_5661Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5661 ID=mRNA_5661|Name=jgi.p|Nanoce1779_2|589884|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
AGAGTCCCTTGCGAACCTCACAGGTAAGCTGCTGTGGAGCTGGGAGGAGG
GAATGGGGGACGAGGGGACCTTGGGAGAAGCAGAAGAATGAGATGGGCCA
CGATCTGCCCGCTCTTCTACCGGAACTTGGCTGTCGGCAGGCCTCTGCCG
CGATGCCGCCCAACATTGCCTTGCGCTCCCAATCCATCCTTTTTACACAT
CTTTATATATGCTACACAACCACAGTCAAGCTAGCATGGGCGATGACATT
CCCGTTGGTCTGGGTGGGCCTCTTCACCAAGGGTAAGTGCATTTTACTAT
CGGATGGACTAGATTTCTTTTATGCCTTGGTGCTCGAGGCACGCGTATCG
CTTCCTTATAAAGCTTTCATATGTATGTAGTGCGATATTTTGCGAGAAAG
CTGGAGCCGGGAGTGGGCGGCAGCGATCGGCCAGCCCAGACCCCCCTTTT
GGCACACGGCTCAGTTATCAGTCGAGCAAAAGATTGATAAATGATAGTAA
TCAAGGCCCTCTCCCAAATCCCACCAGGCTGGTATAACTTTACCTATACG
GGAAACTCTGATACCAGCACCCCTGCATTCCGCAACGACTTCAGTGCCAA
GTACGGGCTTTTTGGCATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCA
GCACCGGGTATCACGGCTGGGTAATCGCCAATGGCGCCAACCCCGACGCA
CTCACTGGCATTCATAGCTCCCGAATCACGGCCATTCTGAGCGCTGTGGC
TTGCGTTTTGACGGGCGTGGCATACTACCGTGCGAACAAGTCCCGTTCCG
AGATTTCTGTTTTCATCCTCGGGCGTTGCTCATGGCTTGCGGCGATTGAC
TTGTCTTTGAACTTAACGACGCTCGGCCTGTGGGGAGTCCTTGTCAACAA
TCCTGTCTTTTTGACCGTCTGCGAAGCCAGCGGCTGCTTCGTCTTGCCCG
GCGAGAACGTCACTGCCTCTACTGTCTCCTACACTTGGGGCCTCCTTTTC
GTCCGGGCGGTCATCCAGAGCCTGTTATTGGTCGGCATCGTGTACCTCAC
CTTGGCAAAACGCGCCAGCTTGAGCTTTAGCACGACTAAGATAGGACCAA
ACAGATCTTTGGAACCCTCTGCACCCGAGCTGGTGGCTTCCCCGAACAAG
ATGGCGGTCTAAAAATTATTGTTCCCTCGAAGAAGTAGACGGTGAAATGG
AGGAGACGTTGAAAAGTAATTAGGGATGGAAACGTGATAGAGGGGTGCTA
CGATTTCAGAAGTATACACATTGGGAGAGATAAGAGTGCAATGTGGAATC
AT
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protein sequence of jgi.p|Nanoce1779_2|589884

>mRNA_5661-protein ID=mRNA_5661-protein|Name=jgi.p|Nanoce1779_2|589884|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MIVIKALSQIPPGWYNFTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSS
GLLSTGYHGWVIANGANPDALTGIHSSRITAILSAVACVLTGVAYYRANK
SRSEISVFILGRCSWLAAIDLSLNLTTLGLWGVLVNNPVFLTVCEASGCF
VLPGENVTASTVSYTWGLLFVRAVIQSLLLVGIVYLTLAKRASLSFSTTK
IGPNRSLEPSAPELVASPNKMAV*
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mRNA from alignment at scaffold_11:248963..250449+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5661 ID=mRNA_5661|Name=jgi.p|Nanoce1779_2|589884|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp|location=Sequence derived from alignment at scaffold_11:248963..250449+ (Nannochloropsis oceanica)
AGAGTCCCTTGCGAACCTCACAGGTAAGCTGCTGTGGAGCTGGGAGGAGG
GAATGGGGGACGAGGGGACCTTGGGAGAAGCAGAAGAATGAGATGGGCCA
CGATCTGCCCGCTCTTCTACCGGAACTTGGCTGTCGGCAGGCCTCTGCCG
CGATGCCGCCCAACATTGCCTTGCGCTCCCAATCCATCCTTTTTACACAT
CTTTATATATGCTACACAACCACAGTCAAGCTAGCATGGGCGATGACATT
CCCGTTGGTCTGGGTGGGCCTCTTCACCAAGGGTAAGTGCATTTTACTAT
CGGATGGACTAGATTTCTTTTATGCCTTGGTGCTCGAGGCACGCGTATCG
CTTCCTTATAAAGCTTTCATATGTATGTAGTGCGATATTTTGCGAGAAAG
CTGGAGCCGGGAGTGGGCGGCAGCGATCGGCCAGCCCAGACCCCCCTTTT
GGCACACGGCTCAGTTATCAGTCGAGCAAAAGATTGATAAATGATAGTAA
TCAAGGCCCTCTCCCAAATCCCACCAGGCTGGTATAACTTTACCTATACG
GGAAACTCTGATACCAGCACCCCTGCATTCCGCAACGACTTCAGTGCCAA
GTACGGGCTTTTTGGCATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCA
GCACCGGGTATCACGGCTGGGTAATCGCCAATGGCGCCAACCCCGACGCA
CTCACTGGCATTCATAGCTCCCGAATCACGGCCATTCTGAGCGCTGTGGC
TTGCGTTTTGACGGGCGTGGCATACTACCGTGCGAACAAGTCCCGTTCCG
AGATTTCTGTTTTCATCCTCGGGCGTTGCTCATGGCTTGCGGCGATTGAC
TTGTCTTTGAACTTAACGACGCTCGGCCTGTGGGGAGTCCTTGTGTAAGT
ATCCAGGGAAATGAATCAGTTAGACCTCGTACTTATCCTTAAGTCGTAGG
TTCATGCCTACTCGCATATATCGACGAAGGTTCTAAAGCACCCTACGGCT
AGCCTACCTTATAACATCAAATTGCTCATATCAACTCCTCCTCTCACCTC
CCACCCATGACGCGCTGAAACTACATTAGCAACAATCCTGTCTTTTTGAC
CGTCTGCGAAGCCAGCGGCTGCTTCGTCTTGCCCGGCGAGAACGTCACTG
CCTCTACTGTCTCCTACACTTGGGGCCTCCTTTTCGTCCGGGCGGTCATC
CAGAGCCTGTTATTGGTCGGCATCGTGTACCTCACCTTGGCAAAACGCGC
CAGCTTGAGCTTTAGCACGACTAAGATAGGACCAAACAGATCTTTGGAAC
CCTCTGCACCCGAGCTGGTGGCTTCCCCGAACAAGATGGCGGTCTAAAAA
TTATTGTTCCCTCGAAGAAGTAGACGGTGAAATGGAGGAGACGTTGAAAA
GTAATTAGGGATGGAAACGTGATAGAGGGGTGCTACGATTTCAGAAGTAT
ACACATTGGGAGAGATAAGAGTGCAATGTGGAATCAT
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Coding sequence (CDS) from alignment at scaffold_11:248963..250449+

>mRNA_5661 ID=mRNA_5661|Name=jgi.p|Nanoce1779_2|589884|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_11:248963..250449+ (Nannochloropsis oceanica)
ATGATAGTAATCAAGGCCCTCTCCCAAATCCCACCAGGCTGGTATAACTT
TACCTATACGGGAAACTCTGATACCAGCACCCCTGCATTCCGCAACGACT
TCAGTGCCAAGTACGGGCTTTTTGGCATTGATTTTGAGTCGCAGTCGTCT
GGCCTCCTCAGCACCGGGTATCACGGCTGGGTAATCGCCAATGGCGCCAA
CCCCGACGCACTCACTGGCATTCATAGCTCCCGAATCACGGCCATTCTGA
GCGCTGTGGCTTGCGTTTTGACGGGCGTGGCATACTACCGTGCGAACAAG
TCCCGTTCCGAGATTTCTGTTTTCATCCTCGGGCGTTGCTCATGGCTTGC
GGCGATTGACTTGTCTTTGAACTTAACGACGCTCGGCCTGTGGGGAGTCC
TTGTCAACAATCCTGTCTTTTTGACCGTCTGCGAAGCCAGCGGCTGCTTC
GTCTTGCCCGGCGAGAACGTCACTGCCTCTACTGTCTCCTACACTTGGGG
CCTCCTTTTCGTCCGGGCGGTCATCCAGAGCCTGTTATTGGTCGGCATCG
TGTACCTCACCTTGGCAAAACGCGCCAGCTTGAGCTTTAGCACGACTAAG
ATAGGACCAAACAGATCTTTGGAACCCTCTGCACCCGAGCTGGTGGCTTC
CCCGAACAAGATGGCGGTCTAAATGATAGTAATCAAGGCCCTCTCCCAAA
TCCCACCAGGCTGGTATAACTTTACCTATACGGGAAACTCTGATACCAGC
ACCCCTGCATTCCGCAACGACTTCAGTGCCAAGTACGGGCTTTTTGGCAT
TGATTTTGAGTCGCAGTCGTCTGGCCTCCTCAGCACCGGGTATCACGGCT
GGGTAATCGCCAATGGCGCCAACCCCGACGCACTCACTGGCATTCATAGC
TCCCGAATCACGGCCATTCTGAGCGCTGTGGCTTGCGTTTTGACGGGCGT
GGCATACTACCGTGCGAACAAGTCCCGTTCCGAGATTTCTGTTTTCATCC
TCGGGCGTTGCTCATGGCTTGCGGCGATTGACTTGTCTTTGAACTTAACG
ACGCTCGGCCTGTGGGGAGTCCTTGTCAACAATCCTGTCTTTTTGACCGT
CTGCGAAGCCAGCGGCTGCTTCGTCTTGCCCGGCGAGAACGTCACTGCCT
CTACTGTCTCCTACACTTGGGGCCTCCTTTTCGTCCGGGCGGTCATCCAG
AGCCTGTTATTGGTCGGCATCGTGTACCTCACCTTGGCAAAACGCGCCAG
CTTGAGCTTTAGCACGACTAAGATAGGACCAAACAGATCTTTGGAACCCT
CTGCACCCGAGCTGGTGGCTTCCCCGAACAAGATGGCGGTCTAA
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Synonyms
Publications