Properties
| Property Name | Value |
|---|
| TranscriptId | 589970 |
| Track | FilteredModels2 |
| ProteinId | 589884 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:248963..250449 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5661 ID=mRNA_5661|Name=jgi.p|Nanoce1779_2|589884|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
AGAGTCCCTTGCGAACCTCACAGGTAAGCTGCTGTGGAGCTGGGAGGAGG
GAATGGGGGACGAGGGGACCTTGGGAGAAGCAGAAGAATGAGATGGGCCA
CGATCTGCCCGCTCTTCTACCGGAACTTGGCTGTCGGCAGGCCTCTGCCG
CGATGCCGCCCAACATTGCCTTGCGCTCCCAATCCATCCTTTTTACACAT
CTTTATATATGCTACACAACCACAGTCAAGCTAGCATGGGCGATGACATT
CCCGTTGGTCTGGGTGGGCCTCTTCACCAAGGGTAAGTGCATTTTACTAT
CGGATGGACTAGATTTCTTTTATGCCTTGGTGCTCGAGGCACGCGTATCG
CTTCCTTATAAAGCTTTCATATGTATGTAGTGCGATATTTTGCGAGAAAG
CTGGAGCCGGGAGTGGGCGGCAGCGATCGGCCAGCCCAGACCCCCCTTTT
GGCACACGGCTCAGTTATCAGTCGAGCAAAAGATTGATAAATGATAGTAA
TCAAGGCCCTCTCCCAAATCCCACCAGGCTGGTATAACTTTACCTATACG
GGAAACTCTGATACCAGCACCCCTGCATTCCGCAACGACTTCAGTGCCAA
GTACGGGCTTTTTGGCATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCA
GCACCGGGTATCACGGCTGGGTAATCGCCAATGGCGCCAACCCCGACGCA
CTCACTGGCATTCATAGCTCCCGAATCACGGCCATTCTGAGCGCTGTGGC
TTGCGTTTTGACGGGCGTGGCATACTACCGTGCGAACAAGTCCCGTTCCG
AGATTTCTGTTTTCATCCTCGGGCGTTGCTCATGGCTTGCGGCGATTGAC
TTGTCTTTGAACTTAACGACGCTCGGCCTGTGGGGAGTCCTTGTCAACAA
TCCTGTCTTTTTGACCGTCTGCGAAGCCAGCGGCTGCTTCGTCTTGCCCG
GCGAGAACGTCACTGCCTCTACTGTCTCCTACACTTGGGGCCTCCTTTTC
GTCCGGGCGGTCATCCAGAGCCTGTTATTGGTCGGCATCGTGTACCTCAC
CTTGGCAAAACGCGCCAGCTTGAGCTTTAGCACGACTAAGATAGGACCAA
ACAGATCTTTGGAACCCTCTGCACCCGAGCTGGTGGCTTCCCCGAACAAG
ATGGCGGTCTAAAAATTATTGTTCCCTCGAAGAAGTAGACGGTGAAATGG
AGGAGACGTTGAAAAGTAATTAGGGATGGAAACGTGATAGAGGGGTGCTA
CGATTTCAGAAGTATACACATTGGGAGAGATAAGAGTGCAATGTGGAATC
AT back to topprotein sequence of jgi.p|Nanoce1779_2|589884 >mRNA_5661-protein ID=mRNA_5661-protein|Name=jgi.p|Nanoce1779_2|589884|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MIVIKALSQIPPGWYNFTYTGNSDTSTPAFRNDFSAKYGLFGIDFESQSS
GLLSTGYHGWVIANGANPDALTGIHSSRITAILSAVACVLTGVAYYRANK
SRSEISVFILGRCSWLAAIDLSLNLTTLGLWGVLVNNPVFLTVCEASGCF
VLPGENVTASTVSYTWGLLFVRAVIQSLLLVGIVYLTLAKRASLSFSTTK
IGPNRSLEPSAPELVASPNKMAV* back to topmRNA from alignment at scaffold_11:248963..250449+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5661 ID=mRNA_5661|Name=jgi.p|Nanoce1779_2|589884|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp|location=Sequence derived from alignment at scaffold_11:248963..250449+ (Nannochloropsis oceanica)
AGAGTCCCTTGCGAACCTCACAGGTAAGCTGCTGTGGAGCTGGGAGGAGG
GAATGGGGGACGAGGGGACCTTGGGAGAAGCAGAAGAATGAGATGGGCCA
CGATCTGCCCGCTCTTCTACCGGAACTTGGCTGTCGGCAGGCCTCTGCCG
CGATGCCGCCCAACATTGCCTTGCGCTCCCAATCCATCCTTTTTACACAT
CTTTATATATGCTACACAACCACAGTCAAGCTAGCATGGGCGATGACATT
CCCGTTGGTCTGGGTGGGCCTCTTCACCAAGGGTAAGTGCATTTTACTAT
CGGATGGACTAGATTTCTTTTATGCCTTGGTGCTCGAGGCACGCGTATCG
CTTCCTTATAAAGCTTTCATATGTATGTAGTGCGATATTTTGCGAGAAAG
CTGGAGCCGGGAGTGGGCGGCAGCGATCGGCCAGCCCAGACCCCCCTTTT
GGCACACGGCTCAGTTATCAGTCGAGCAAAAGATTGATAAATGATAGTAA
TCAAGGCCCTCTCCCAAATCCCACCAGGCTGGTATAACTTTACCTATACG
GGAAACTCTGATACCAGCACCCCTGCATTCCGCAACGACTTCAGTGCCAA
GTACGGGCTTTTTGGCATTGATTTTGAGTCGCAGTCGTCTGGCCTCCTCA
GCACCGGGTATCACGGCTGGGTAATCGCCAATGGCGCCAACCCCGACGCA
CTCACTGGCATTCATAGCTCCCGAATCACGGCCATTCTGAGCGCTGTGGC
TTGCGTTTTGACGGGCGTGGCATACTACCGTGCGAACAAGTCCCGTTCCG
AGATTTCTGTTTTCATCCTCGGGCGTTGCTCATGGCTTGCGGCGATTGAC
TTGTCTTTGAACTTAACGACGCTCGGCCTGTGGGGAGTCCTTGTGTAAGT
ATCCAGGGAAATGAATCAGTTAGACCTCGTACTTATCCTTAAGTCGTAGG
TTCATGCCTACTCGCATATATCGACGAAGGTTCTAAAGCACCCTACGGCT
AGCCTACCTTATAACATCAAATTGCTCATATCAACTCCTCCTCTCACCTC
CCACCCATGACGCGCTGAAACTACATTAGCAACAATCCTGTCTTTTTGAC
CGTCTGCGAAGCCAGCGGCTGCTTCGTCTTGCCCGGCGAGAACGTCACTG
CCTCTACTGTCTCCTACACTTGGGGCCTCCTTTTCGTCCGGGCGGTCATC
CAGAGCCTGTTATTGGTCGGCATCGTGTACCTCACCTTGGCAAAACGCGC
CAGCTTGAGCTTTAGCACGACTAAGATAGGACCAAACAGATCTTTGGAAC
CCTCTGCACCCGAGCTGGTGGCTTCCCCGAACAAGATGGCGGTCTAAAAA
TTATTGTTCCCTCGAAGAAGTAGACGGTGAAATGGAGGAGACGTTGAAAA
GTAATTAGGGATGGAAACGTGATAGAGGGGTGCTACGATTTCAGAAGTAT
ACACATTGGGAGAGATAAGAGTGCAATGTGGAATCAT back to topCoding sequence (CDS) from alignment at scaffold_11:248963..250449+ >mRNA_5661 ID=mRNA_5661|Name=jgi.p|Nanoce1779_2|589884|organism=Nannochloropsis oceanica|type=CDS|length=1344bp|location=Sequence derived from alignment at scaffold_11:248963..250449+ (Nannochloropsis oceanica)
ATGATAGTAATCAAGGCCCTCTCCCAAATCCCACCAGGCTGGTATAACTT
TACCTATACGGGAAACTCTGATACCAGCACCCCTGCATTCCGCAACGACT
TCAGTGCCAAGTACGGGCTTTTTGGCATTGATTTTGAGTCGCAGTCGTCT
GGCCTCCTCAGCACCGGGTATCACGGCTGGGTAATCGCCAATGGCGCCAA
CCCCGACGCACTCACTGGCATTCATAGCTCCCGAATCACGGCCATTCTGA
GCGCTGTGGCTTGCGTTTTGACGGGCGTGGCATACTACCGTGCGAACAAG
TCCCGTTCCGAGATTTCTGTTTTCATCCTCGGGCGTTGCTCATGGCTTGC
GGCGATTGACTTGTCTTTGAACTTAACGACGCTCGGCCTGTGGGGAGTCC
TTGTCAACAATCCTGTCTTTTTGACCGTCTGCGAAGCCAGCGGCTGCTTC
GTCTTGCCCGGCGAGAACGTCACTGCCTCTACTGTCTCCTACACTTGGGG
CCTCCTTTTCGTCCGGGCGGTCATCCAGAGCCTGTTATTGGTCGGCATCG
TGTACCTCACCTTGGCAAAACGCGCCAGCTTGAGCTTTAGCACGACTAAG
ATAGGACCAAACAGATCTTTGGAACCCTCTGCACCCGAGCTGGTGGCTTC
CCCGAACAAGATGGCGGTCTAAATGATAGTAATCAAGGCCCTCTCCCAAA
TCCCACCAGGCTGGTATAACTTTACCTATACGGGAAACTCTGATACCAGC
ACCCCTGCATTCCGCAACGACTTCAGTGCCAAGTACGGGCTTTTTGGCAT
TGATTTTGAGTCGCAGTCGTCTGGCCTCCTCAGCACCGGGTATCACGGCT
GGGTAATCGCCAATGGCGCCAACCCCGACGCACTCACTGGCATTCATAGC
TCCCGAATCACGGCCATTCTGAGCGCTGTGGCTTGCGTTTTGACGGGCGT
GGCATACTACCGTGCGAACAAGTCCCGTTCCGAGATTTCTGTTTTCATCC
TCGGGCGTTGCTCATGGCTTGCGGCGATTGACTTGTCTTTGAACTTAACG
ACGCTCGGCCTGTGGGGAGTCCTTGTCAACAATCCTGTCTTTTTGACCGT
CTGCGAAGCCAGCGGCTGCTTCGTCTTGCCCGGCGAGAACGTCACTGCCT
CTACTGTCTCCTACACTTGGGGCCTCCTTTTCGTCCGGGCGGTCATCCAG
AGCCTGTTATTGGTCGGCATCGTGTACCTCACCTTGGCAAAACGCGCCAG
CTTGAGCTTTAGCACGACTAAGATAGGACCAAACAGATCTTTGGAACCCT
CTGCACCCGAGCTGGTGGCTTCCCCGAACAAGATGGCGGTCTAA back to top
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