Properties
| Property Name | Value |
|---|
| TranscriptId | 555526 |
| Track | FilteredModels2 |
| ProteinId | 555440 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:238905..241312 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5659 ID=mRNA_5659|Name=jgi.p|Nanoce1779_2|555440|organism=Nannochloropsis oceanica|type=mRNA|length=2033bp
ACAGGCGATAGTAGCAGGAGACGAAGCAGGATAATAACCCCGCGTAGCCA
TGATGAACGCCCCGGTGATGGTATTGAACGCCAACACCAAGCGCGAAACG
GGCCGCACCGCCCAGCTGGGCAATATTTCTGCAGCAAAAGCTGTGGCTGA
TATTATCAGAACGACACTGGGGCCTAGGGCGATGCTTAAGATGCTATTGG
ATCCGATGGGAGGCATCGTGATAACGAATGATGGGCATTGTATTTTGAGG
GAGGTCGATGTCTCGCACCCCGCAGCGAAGAGCATGATTGAGCTGAGTAG
GGCGCAGGATGAGGAAGTGGGGGATGGAACGACGAGCGTGATTATTTTGA
CAGGTGAAATGCTCGCTCAAGCCGAGCAATTTCTGCATCGCAACATCCAC
CCCACGCAAATCGTTGCAGGTTACTCCAAGGCCCTCCAAGAAGCTATGCT
CGTTTGCAACTCCCTGGCCAAACCCATTGACGTGAAGGACAAGAAAGCGC
TTTCTCAGATCGTGTCTGCGTGCGTCGGCACCAAGTTCTCGTCTCGCTGG
GGTCCGTTCATGGTCGACTTAGCCGTGGAAAGTGTATTGAAGGTCGTGAG
AGAGGTGGGGCCCGAGGGAGGGGGGGAGGGAGGGGTGGGGAACTACAAGG
AGTGTGACGTCAAGCGGTATGTGAGAGTGGAGAAAATCCCGGGGGGGGAG
CTGGGGGAGAGTAAGGTCATTGATGGCGTTATGTTCAACAAGGACGTGAC
GCACTCGAAGATGAGGCGAAGGATTGAGCGGCCGCGGATCCTCTTGTTGG
ACTGTCCGTTGGAGTACAAGAAGGGGGAGAGCCAGACGAATGTGGAGGTG
AAGGAGGAGGAGGACTGGAACACCCTCTTGAGGATGGAGGAGGAATTCAT
TGAGAAGATGTGCGCAGAGATTGTGGCGTTTCGACCCGATATTGTCATAA
CGGAGAAGGGGGTGAGTGACCTGGCGCAGCATTACCTGTTGAAAGCGGGG
GTGACGGCGTTTAGGCGTGTGCGGAAAAGCGACAACAACCGGATAGCTCG
AGCTGTGGGGGCGACCATTGTCTCTCGACCGGACGAGATCCAAGAGGGTG
ATATTGGCACAGGTTGCGGTTTGTTCGAAGTCCGCAAGATCGGCGACGAA
TATTTTGTATTTTTGGAAGCTTGCGACCAGCCCAAGGCGTGCACGGTGCT
CTTGCGCGGGGCTTCCAAAGATGTCCTGAACGAGATCGAGCGTAATCTCC
AAGACGCCCTGCAAGTCGTGCGAAACTTGGTCTTTGAGTCCAAACTCCTC
CCGGGGGGGGGTGCGACGGAGATGGCCGTTGGACAGGCCTTGGCGCGTGC
AGCGTCGAAGATCGAGGGTGTTCAACAGTTTCCGTTCAAAGCCGTTGGGG
AAGCGCTCGAGGTGATCCCGCGGACGCTCGCGCAGAATTGTGGGACGAAC
GTCCTGCGAATCATGACTCAGTTGAGGGCGAAGCATACGCAAGGCCCAAG
CACCTGGGGTATCGATGGGGAGAAGGGCGTGTTGGTCCAGATGGAGGATT
TGGGTGTGTGGGAACCATATGCCGTTAAGGTGCAGACGATTAAGACGGCA
GTGGAGGCGGCGTGCATGTTGTTGAGGATCGATGATGTGGTGAGTGGAAT
GAAGAAGAAGAAGTAGATGAGGAGTGGCGGGGGAGATAGGCGTGGTGGTG
GTGGTGGTGGTGGAGCAGGGTCAATAAAAGAGGATTTAAATTTTGCATGT
TTGAGTATGTGTGGGTTTGGATCGGAGAAAAACAGGTAGGAGAGAGAGTG
AGACGAGGAGGAGAAAGTGATAAAACAGAGGAAGGGAAAGATGAAGGAAG
AGAAGTAGAGAACGCATCAGAAAGAAACGTGCAAGTGATTTAGAATCAAC
CAATCAAAACCGAATCAATCAATCTACGGCGAAGAGTCTCCGTGAGAGGA
ATCCTAACAACTAACGGACAACAGGATTTTGAAAAAGGTAAACCAAATTA
AAAATTAAACGAAGAAACGACACCAATTTATCC back to topprotein sequence of jgi.p|Nanoce1779_2|555440 >mRNA_5659-protein ID=mRNA_5659-protein|Name=jgi.p|Nanoce1779_2|555440|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MMNAPVMVLNANTKRETGRTAQLGNISAAKAVADIIRTTLGPRAMLKMLL
DPMGGIVITNDGHCILREVDVSHPAAKSMIELSRAQDEEVGDGTTSVIIL
TGEMLAQAEQFLHRNIHPTQIVAGYSKALQEAMLVCNSLAKPIDVKDKKA
LSQIVSACVGTKFSSRWGPFMVDLAVESVLKVVREVGPEGGGEGGVGNYK
ECDVKRYVRVEKIPGGELGESKVIDGVMFNKDVTHSKMRRRIERPRILLL
DCPLEYKKGESQTNVEVKEEEDWNTLLRMEEEFIEKMCAEIVAFRPDIVI
TEKGVSDLAQHYLLKAGVTAFRRVRKSDNNRIARAVGATIVSRPDEIQEG
DIGTGCGLFEVRKIGDEYFVFLEACDQPKACTVLLRGASKDVLNEIERNL
QDALQVVRNLVFESKLLPGGGATEMAVGQALARAASKIEGVQQFPFKAVG
EALEVIPRTLAQNCGTNVLRIMTQLRAKHTQGPSTWGIDGEKGVLVQMED
LGVWEPYAVKVQTIKTAVEAACMLLRIDDVVSGMKKKK* back to topmRNA from alignment at scaffold_11:238905..241312- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5659 ID=mRNA_5659|Name=jgi.p|Nanoce1779_2|555440|organism=Nannochloropsis oceanica|type=mRNA|length=2408bp|location=Sequence derived from alignment at scaffold_11:238905..241312- (Nannochloropsis oceanica)
ACAGGCGATAGTAGCAGGAGACGAAGCAGGATAATAACCCCGCGTAGCCA
TGATGAACGCCCCGGTGATGGTATTGAGTAAGTTCTTTTCCCCTTTTCCT
TCTCCACCTCCTCAAATAATAGAACAAATTCGTAGGTTCCCCCCCTTCCC
TTCGCACCACTCAGACCACCTCCCTCCCTCCATCGCTTCCGTTCACGCGT
CCATCACTCGTGCTGAGATTGACATGGATAAGCTATGCCAGTGGTTGATG
TGCGGTGAACTGTAGGTCCACCCATTCTCGTCCCCTCTCACCCCCTCCCT
CTCTCCCTCCCTCCGCTCCTTCCCAAGACGCCAACACCAAGCGCGAAACG
GGCCGCACCGCCCAGCTGGGCAATATTTCTGCAGCAAAAGCTGTGGCTGA
TATTATCAGAACGACACTGGGGCCTAGGGCGATGCTTAAGATGCTATTGG
ATCCGATGGGAGGCATCGTGATAACGAATGATGGGCATTGTATTTTGAGG
GAGGTCGATGTCTCGCACCCCGCAGCGAAGAGCATGATTGAGCTGAGTAG
GGCGCAGGATGAGGAAGTGGGGGATGGAACGACGAGCGTGATTATTTTGA
CAGGTATGTGTTTTCTTCTCATTTCTTTGTTTTGTTGTAAAGATACACCG
ACCAACATCCTCCCTCCTCCCTCTCTCCTCCTCTCCTTTCTCCTTCCCAC
CCTCCTTCCCACCCTCCTTCCCTCCTAGGTGAAATGCTCGCTCAAGCCGA
GCAATTTCTGCATCGCAACATCCACCCCACGCAAATCGTTGCAGGTTACT
CCAAGGCCCTCCAAGAAGCTATGCTCGTTTGCAACTCCCTGGCCAAACCC
ATTGACGTGAAGGACAAGAAAGCGCTTTCTCAGATCGTGTCTGCGTGCGT
CGGCACCAAGTTCTCGTCTCGCTGGGGTCCGTTCATGGTCGACTTAGCCG
TGGAAAGTGTATTGAAGGTCGTGAGAGAGGTGGGGCCCGAGGGAGGGGGG
GAGGGAGGGGTGGGGAACTACAAGGAGTGTGACGTCAAGCGGTATGTGAG
AGTGGAGAAAATCCCGGGGGGGGAGCTGGGGGAGAGTAAGGTCATTGATG
GCGTTATGTTCAACAAGGACGTGACGCACTCGAAGATGAGGCGAAGGATT
GAGCGGCCGCGGATCCTCTTGTTGGACTGTCCGTTGGAGTACAAGAAGGG
GGAGAGCCAGACGAATGTGGAGGTGAAGGAGGAGGAGGACTGGAACACCC
TCTTGAGGATGGAGGAGGAATTCATTGAGAAGATGTGCGCAGAGATTGTG
GCGTTTCGACCCGATATTGTCATAACGGAGAAGGGGGTGAGTGACCTGGC
GCAGCATTACCTGTTGAAAGCGGGGGTGACGGCGTTTAGGCGTGTGCGGA
AAAGCGACAACAACCGGATAGCTCGAGCTGTGGGGGCGACCATTGTCTCT
CGACCGGACGAGATCCAAGAGGGTGATATTGGCACAGGTTGCGGTTTGTT
CGAAGTCCGCAAGATCGGCGACGAATATTTTGTATTTTTGGAAGCTTGCG
ACCAGCCCAAGGCGTGCACGGTGCTCTTGCGCGGGGCTTCCAAAGATGTC
CTGAACGAGATCGAGCGTAATCTCCAAGACGCCCTGCAAGTCGTGCGAAA
CTTGGTCTTTGAGTCCAAACTCCTCCCGGGGGGGGGTGCGACGGAGATGG
CCGTTGGACAGGCCTTGGCGCGTGCAGCGTCGAAGATCGAGGGTGTTCAA
CAGTTTCCGTTCAAAGCCGTTGGGGAAGCGCTCGAGGTGATCCCGCGGAC
GCTCGCGCAGAATTGTGGGACGAACGTCCTGCGAATCATGACTCAGTTGA
GGGCGAAGCATACGCAAGGCCCAAGCACCTGGGGTATCGATGGGGAGAAG
GGCGTGTTGGTCCAGATGGAGGATTTGGGTGTGTGGGAACCATATGCCGT
TAAGGTGCAGACGATTAAGACGGCAGTGGAGGCGGCGTGCATGTTGTTGA
GGATCGATGATGTGGTGAGTGGAATGAAGAAGAAGAAGTAGATGAGGAGT
GGCGGGGGAGATAGGCGTGGTGGTGGTGGTGGTGGTGGAGCAGGGTCAAT
AAAAGAGGATTTAAATTTTGCATGTTTGAGTATGTGTGGGTTTGGATCGG
AGAAAAACAGGTAGGAGAGAGAGTGAGACGAGGAGGAGAAAGTGATAAAA
CAGAGGAAGGGAAAGATGAAGGAAGAGAAGTAGAGAACGCATCAGAAAGA
AACGTGCAAGTGATTTAGAATCAACCAATCAAAACCGAATCAATCAATCT
ACGGCGAAGAGTCTCCGTGAGAGGAATCCTAACAACTAACGGACAACAGG
ATTTTGAAAAAGGTAAACCAAATTAAAAATTAAACGAAGAAACGACACCA
ATTTATCC back to topCoding sequence (CDS) from alignment at scaffold_11:238905..241312- >mRNA_5659 ID=mRNA_5659|Name=jgi.p|Nanoce1779_2|555440|organism=Nannochloropsis oceanica|type=CDS|length=4851bp|location=Sequence derived from alignment at scaffold_11:238905..241312- (Nannochloropsis oceanica)
GTGAAATGCTCGCTCAAGCCGAGCAATTTCTGCATCGCAACATCCACCCC
ACGCAAATCGTTGCAGGTTACTCCAAGGCCCTCCAAGAAGCTATGCTCGT
TTGCAACTCCCTGGCCAAACCCATTGACGTGAAGGACAAGAAAGCGCTTT
CTCAGATCGTGTCTGCGTGCGTCGGCACCAAGTTCTCGTCTCGCTGGGGT
CCGTTCATGGTCGACTTAGCCGTGGAAAGTGTATTGAAGGTCGTGAGAGA
GGTGGGGCCCGAGGGAGGGGGGGAGGGAGGGGTGGGGAACTACAAGGAGT
GTGACGTCAAGCGGTATGTGAGAGTGGAGAAAATCCCGGGGGGGGAGCTG
GGGGAGAGTAAGGTCATTGATGGCGTTATGTTCAACAAGGACGTGACGCA
CTCGAAGATGAGGCGAAGGATTGAGCGGCCGCGGATCCTCTTGTTGGACT
GTCCGTTGGAGTACAAGAAGGGGGAGAGCCAGACGAATGTGGAGGTGAAG
GAGGAGGAGGACTGGAACACCCTCTTGAGGATGGAGGAGGAATTCATTGA
GAAGATGTGCGCAGAGATTGTGGCGTTTCGACCCGATATTGTCATAACGG
AGAAGGGGGTGAGTGACCTGGCGCAGCATTACCTGTTGAAAGCGGGGGTG
ACGGCGTTTAGGCGTGTGCGGAAAAGCGACAACAACCGGATAGCTCGAGC
TGTGGGGGCGACCATTGTCTCTCGACCGGACGAGATCCAAGAGGGTGATA
TTGGCACAGGTTGCGGTTTGTTCGAAGTCCGCAAGATCGGCGACGAATAT
TTTGTATTTTTGGAAGCTTGCGACCAGCCCAAGGCGTGCACGGTGCTCTT
GCGCGGGGCTTCCAAAGATGTCCTGAACGAGATCGAGCGTAATCTCCAAG
ACGCCCTGCAAGTCGTGCGAAACTTGGTCTTTGAGTCCAAACTCCTCCCG
GGGGGGGGTGCGACGGAGATGGCCGTTGGACAGGCCTTGGCGCGTGCAGC
GTCGAAGATCGAGGGTGTTCAACAGTTTCCGTTCAAAGCCGTTGGGGAAG
CGCTCGAGGTGATCCCGCGGACGCTCGCGCAGAATTGTGGGACGAACGTC
CTGCGAATCATGACTCAGTTGAGGGCGAAGCATACGCAAGGCCCAAGCAC
CTGGGGTATCGATGGGGAGAAGGGCGTGTTGGTCCAGATGGAGGATTTGG
GTGTGTGGGAACCATATGCCGTTAAGGTGCAGACGATTAAGACGGCAGTG
GAGGCGGCGTGCATGTTGTTGAGGATCGATGATGTGGTGAGTGGAATGAA
GAAGAAGAAGTAGACGCCAACACCAAGCGCGAAACGGGCCGCACCGCCCA
GCTGGGCAATATTTCTGCAGCAAAAGCTGTGGCTGATATTATCAGAACGA
CACTGGGGCCTAGGGCGATGCTTAAGATGCTATTGGATCCGATGGGAGGC
ATCGTGATAACGAATGATGGGCATTGTATTTTGAGGGAGGTCGATGTCTC
GCACCCCGCAGCGAAGAGCATGATTGAGCTGAGTAGGGCGCAGGATGAGG
AAGTGGGGGATGGAACGACGAGCGTGATTATTTTGACAGATGATGAACGC
CCCGGTGATGGTATTGAGTGAAATGCTCGCTCAAGCCGAGCAATTTCTGC
ATCGCAACATCCACCCCACGCAAATCGTTGCAGGTTACTCCAAGGCCCTC
CAAGAAGCTATGCTCGTTTGCAACTCCCTGGCCAAACCCATTGACGTGAA
GGACAAGAAAGCGCTTTCTCAGATCGTGTCTGCGTGCGTCGGCACCAAGT
TCTCGTCTCGCTGGGGTCCGTTCATGGTCGACTTAGCCGTGGAAAGTGTA
TTGAAGGTCGTGAGAGAGGTGGGGCCCGAGGGAGGGGGGGAGGGAGGGGT
GGGGAACTACAAGGAGTGTGACGTCAAGCGGTATGTGAGAGTGGAGAAAA
TCCCGGGGGGGGAGCTGGGGGAGAGTAAGGTCATTGATGGCGTTATGTTC
AACAAGGACGTGACGCACTCGAAGATGAGGCGAAGGATTGAGCGGCCGCG
GATCCTCTTGTTGGACTGTCCGTTGGAGTACAAGAAGGGGGAGAGCCAGA
CGAATGTGGAGGTGAAGGAGGAGGAGGACTGGAACACCCTCTTGAGGATG
GAGGAGGAATTCATTGAGAAGATGTGCGCAGAGATTGTGGCGTTTCGACC
CGATATTGTCATAACGGAGAAGGGGGTGAGTGACCTGGCGCAGCATTACC
TGTTGAAAGCGGGGGTGACGGCGTTTAGGCGTGTGCGGAAAAGCGACAAC
AACCGGATAGCTCGAGCTGTGGGGGCGACCATTGTCTCTCGACCGGACGA
GATCCAAGAGGGTGATATTGGCACAGGTTGCGGTTTGTTCGAAGTCCGCA
AGATCGGCGACGAATATTTTGTATTTTTGGAAGCTTGCGACCAGCCCAAG
GCGTGCACGGTGCTCTTGCGCGGGGCTTCCAAAGATGTCCTGAACGAGAT
CGAGCGTAATCTCCAAGACGCCCTGCAAGTCGTGCGAAACTTGGTCTTTG
AGTCCAAACTCCTCCCGGGGGGGGGTGCGACGGAGATGGCCGTTGGACAG
GCCTTGGCGCGTGCAGCGTCGAAGATCGAGGGTGTTCAACAGTTTCCGTT
CAAAGCCGTTGGGGAAGCGCTCGAGGTGATCCCGCGGACGCTCGCGCAGA
ATTGTGGGACGAACGTCCTGCGAATCATGACTCAGTTGAGGGCGAAGCAT
ACGCAAGGCCCAAGCACCTGGGGTATCGATGGGGAGAAGGGCGTGTTGGT
CCAGATGGAGGATTTGGGTGTGTGGGAACCATATGCCGTTAAGGTGCAGA
CGATTAAGACGGCAGTGGAGGCGGCGTGCATGTTGTTGAGGATCGATGAT
GTGGTGAGTGGAATGAAGAAGAAGAAGTAGACGCCAACACCAAGCGCGAA
ACGGGCCGCACCGCCCAGCTGGGCAATATTTCTGCAGCAAAAGCTGTGGC
TGATATTATCAGAACGACACTGGGGCCTAGGGCGATGCTTAAGATGCTAT
TGGATCCGATGGGAGGCATCGTGATAACGAATGATGGGCATTGTATTTTG
AGGGAGGTCGATGTCTCGCACCCCGCAGCGAAGAGCATGATTGAGCTGAG
TAGGGCGCAGGATGAGGAAGTGGGGGATGGAACGACGAGCGTGATTATTT
TGACAGATGATGAACGCCCCGGTGATGGTATTGAGTGAAATGCTCGCTCA
AGCCGAGCAATTTCTGCATCGCAACATCCACCCCACGCAAATCGTTGCAG
GTTACTCCAAGGCCCTCCAAGAAGCTATGCTCGTTTGCAACTCCCTGGCC
AAACCCATTGACGTGAAGGACAAGAAAGCGCTTTCTCAGATCGTGTCTGC
GTGCGTCGGCACCAAGTTCTCGTCTCGCTGGGGTCCGTTCATGGTCGACT
TAGCCGTGGAAAGTGTATTGAAGGTCGTGAGAGAGGTGGGGCCCGAGGGA
GGGGGGGAGGGAGGGGTGGGGAACTACAAGGAGTGTGACGTCAAGCGGTA
TGTGAGAGTGGAGAAAATCCCGGGGGGGGAGCTGGGGGAGAGTAAGGTCA
TTGATGGCGTTATGTTCAACAAGGACGTGACGCACTCGAAGATGAGGCGA
AGGATTGAGCGGCCGCGGATCCTCTTGTTGGACTGTCCGTTGGAGTACAA
GAAGGGGGAGAGCCAGACGAATGTGGAGGTGAAGGAGGAGGAGGACTGGA
ACACCCTCTTGAGGATGGAGGAGGAATTCATTGAGAAGATGTGCGCAGAG
ATTGTGGCGTTTCGACCCGATATTGTCATAACGGAGAAGGGGGTGAGTGA
CCTGGCGCAGCATTACCTGTTGAAAGCGGGGGTGACGGCGTTTAGGCGTG
TGCGGAAAAGCGACAACAACCGGATAGCTCGAGCTGTGGGGGCGACCATT
GTCTCTCGACCGGACGAGATCCAAGAGGGTGATATTGGCACAGGTTGCGG
TTTGTTCGAAGTCCGCAAGATCGGCGACGAATATTTTGTATTTTTGGAAG
CTTGCGACCAGCCCAAGGCGTGCACGGTGCTCTTGCGCGGGGCTTCCAAA
GATGTCCTGAACGAGATCGAGCGTAATCTCCAAGACGCCCTGCAAGTCGT
GCGAAACTTGGTCTTTGAGTCCAAACTCCTCCCGGGGGGGGGTGCGACGG
AGATGGCCGTTGGACAGGCCTTGGCGCGTGCAGCGTCGAAGATCGAGGGT
GTTCAACAGTTTCCGTTCAAAGCCGTTGGGGAAGCGCTCGAGGTGATCCC
GCGGACGCTCGCGCAGAATTGTGGGACGAACGTCCTGCGAATCATGACTC
AGTTGAGGGCGAAGCATACGCAAGGCCCAAGCACCTGGGGTATCGATGGG
GAGAAGGGCGTGTTGGTCCAGATGGAGGATTTGGGTGTGTGGGAACCATA
TGCCGTTAAGGTGCAGACGATTAAGACGGCAGTGGAGGCGGCGTGCATGT
TGTTGAGGATCGATGATGTGGTGAGTGGAATGAAGAAGAAGAAGTAGACG
CCAACACCAAGCGCGAAACGGGCCGCACCGCCCAGCTGGGCAATATTTCT
GCAGCAAAAGCTGTGGCTGATATTATCAGAACGACACTGGGGCCTAGGGC
GATGCTTAAGATGCTATTGGATCCGATGGGAGGCATCGTGATAACGAATG
ATGGGCATTGTATTTTGAGGGAGGTCGATGTCTCGCACCCCGCAGCGAAG
AGCATGATTGAGCTGAGTAGGGCGCAGGATGAGGAAGTGGGGGATGGAAC
GACGAGCGTGATTATTTTGACAGATGATGAACGCCCCGGTGATGGTATTG
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