jgi.p|Nanoce1779_2|670943, mRNA_5658 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|670943
Unique NamemRNA_5658
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1390
Alignment locationscaffold_11:237501..238890 +

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Properties
Property NameValue
TranscriptId671029
TrackFilteredModels2
ProteinId670943
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:237501..238890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670943gene_5658Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|670943mRNA_5658-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5658CDS_5658Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5658 ID=mRNA_5658|Name=jgi.p|Nanoce1779_2|670943|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp
CACACACCAACACACACCAACACACACCAACACACACACCAGAACACACA
TGCACACTAACATATATATATTTGCACATATACACACTCAAATAGACACA
CCGCTGTGGCATCGCATTATGAATACCTCCAATCCACCCGACTCTTTCTT
GTTAGATTGTGTTCTCGGCTTCCCAACGAAAACCCCTGCGGAAATCGACA
GCTTCATGAACCTTTACGCCAGGGAAGGTTACCATAGCAGCAGAAGTTCT
GTCAACTACCAAGACGAGCAAGGTCGAAGTCCCTTGGGAGTCGTGGCCAC
AATGGCCGGGCGCCCAATGGTAGACTTCGTGAAGATGTTGGTGGGACCGC
TAACGAAGCTGCGCATAAAAGATGCCCGGTTACGGACCCCTTTGTTGCTT
GCCGCTGAGAATGACCGTACAGAGATTTTCATCTATCTACTGGAGAGACT
CTCACAATATGAGACGGGATGGCAGCTGACAGAGGAAAAGGATTGCTATC
AACGTGGGCCGCTGCATTACATGTGCCAACACCGAAATGTGGCAGGAGTG
CGGGCCCTCCTTGCCGTGGCAGGGGCACCACCCGTCGGCGCCAAGGTAAG
AGAGGATGGGGAGGAAGAGAAGAAGAAGAAGGAGAGGATCAAGGTCGTGG
TCAATGCCAGGACAAGCAGTGGGGAGACGCCCCTCTTCTGGTTGGCACAG
TCATCAACCTTTTCGTCGCAAGAGAAAGAAAGGATGGAGGGCGGGGGAAA
TAGACAGAAAGAGAGAAGTAGCCGCGACTGCTCCTCCATTGACGACAAAA
ACACGGCTGATGCTGTGGAGATCGCCGAGCTTCTCCTAGCGGCAGGTGCA
GACCCCCAGGTGGTCAACGCCATGGGCCAGAAGCCTATGGATGTACTGGA
TGAGGGGGAGGGGGATGATGGGAAGGAGGGAGGGGTGAAGAATCGGCTGC
AGGCATTGTTATCCCCTGAGAGAGTTTCAAGGGGGAGGGGAGAAACAGAG
AAGGAGGAGGAGGAAAAGGAGGAGCAGGAGGCTGAGAGGAAAGTCACAGA
GAAAAAAGGGTGTGAAAACAGTAGCATAGCGATCAATACGCCCTTTCCGA
AGACGGCTGCCGTAGCACCACCAGGAGGCATGCTGTCCTCCTTCCCCACC
CGAGGAGTGGGATTCGATGCTGGTAACAGCAGTCGCATCGGCATTGGTAG
TGGTAGCAGGAGTGGCAGCAGTGGAGGTAGTGCCCCCAAGAGGCTGAAGA
TAAAGCTAAAGGCACCTGCGGCGAGAGCAAAAGATAAGTAAGAATGAGGT
TTCGCTAGCGGGAATGGAAGGATAGGGAGGACGCGGCAAGTGATAGAGAG
TGATTTGATGTAATAAACGAAAGTACAGGAGACAAGTGTC
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protein sequence of jgi.p|Nanoce1779_2|670943

>mRNA_5658-protein ID=mRNA_5658-protein|Name=jgi.p|Nanoce1779_2|670943|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MHTNIYIFAHIHTQIDTPLWHRIMNTSNPPDSFLLDCVLGFPTKTPAEID
SFMNLYAREGYHSSRSSVNYQDEQGRSPLGVVATMAGRPMVDFVKMLVGP
LTKLRIKDARLRTPLLLAAENDRTEIFIYLLERLSQYETGWQLTEEKDCY
QRGPLHYMCQHRNVAGVRALLAVAGAPPVGAKVREDGEEEKKKKERIKVV
VNARTSSGETPLFWLAQSSTFSSQEKERMEGGGNRQKERSSRDCSSIDDK
NTADAVEIAELLLAAGADPQVVNAMGQKPMDVLDEGEGDDGKEGGVKNRL
QALLSPERVSRGRGETEKEEEEKEEQEAERKVTEKKGCENSSIAINTPFP
KTAAVAPPGGMLSSFPTRGVGFDAGNSSRIGIGSGSRSGSSGGSAPKRLK
IKLKAPAARAKDK*
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mRNA from alignment at scaffold_11:237501..238890+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5658 ID=mRNA_5658|Name=jgi.p|Nanoce1779_2|670943|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp|location=Sequence derived from alignment at scaffold_11:237501..238890+ (Nannochloropsis oceanica)
CACACACCAACACACACCAACACACACCAACACACACACCAGAACACACA
TGCACACTAACATATATATATTTGCACATATACACACTCAAATAGACACA
CCGCTGTGGCATCGCATTATGAATACCTCCAATCCACCCGACTCTTTCTT
GTTAGATTGTGTTCTCGGCTTCCCAACGAAAACCCCTGCGGAAATCGACA
GCTTCATGAACCTTTACGCCAGGGAAGGTTACCATAGCAGCAGAAGTTCT
GTCAACTACCAAGACGAGCAAGGTCGAAGTCCCTTGGGAGTCGTGGCCAC
AATGGCCGGGCGCCCAATGGTAGACTTCGTGAAGATGTTGGTGGGACCGC
TAACGAAGCTGCGCATAAAAGATGCCCGGTTACGGACCCCTTTGTTGCTT
GCCGCTGAGAATGACCGTACAGAGATTTTCATCTATCTACTGGAGAGACT
CTCACAATATGAGACGGGATGGCAGCTGACAGAGGAAAAGGATTGCTATC
AACGTGGGCCGCTGCATTACATGTGCCAACACCGAAATGTGGCAGGAGTG
CGGGCCCTCCTTGCCGTGGCAGGGGCACCACCCGTCGGCGCCAAGGTAAG
AGAGGATGGGGAGGAAGAGAAGAAGAAGAAGGAGAGGATCAAGGTCGTGG
TCAATGCCAGGACAAGCAGTGGGGAGACGCCCCTCTTCTGGTTGGCACAG
TCATCAACCTTTTCGTCGCAAGAGAAAGAAAGGATGGAGGGCGGGGGAAA
TAGACAGAAAGAGAGAAGTAGCCGCGACTGCTCCTCCATTGACGACAAAA
ACACGGCTGATGCTGTGGAGATCGCCGAGCTTCTCCTAGCGGCAGGTGCA
GACCCCCAGGTGGTCAACGCCATGGGCCAGAAGCCTATGGATGTACTGGA
TGAGGGGGAGGGGGATGATGGGAAGGAGGGAGGGGTGAAGAATCGGCTGC
AGGCATTGTTATCCCCTGAGAGAGTTTCAAGGGGGAGGGGAGAAACAGAG
AAGGAGGAGGAGGAAAAGGAGGAGCAGGAGGCTGAGAGGAAAGTCACAGA
GAAAAAAGGGTGTGAAAACAGTAGCATAGCGATCAATACGCCCTTTCCGA
AGACGGCTGCCGTAGCACCACCAGGAGGCATGCTGTCCTCCTTCCCCACC
CGAGGAGTGGGATTCGATGCTGGTAACAGCAGTCGCATCGGCATTGGTAG
TGGTAGCAGGAGTGGCAGCAGTGGAGGTAGTGCCCCCAAGAGGCTGAAGA
TAAAGCTAAAGGCACCTGCGGCGAGAGCAAAAGATAAGTAAGAATGAGGT
TTCGCTAGCGGGAATGGAAGGATAGGGAGGACGCGGCAAGTGATAGAGAG
TGATTTGATGTAATAAACGAAAGTACAGGAGACAAGTGTC
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Coding sequence (CDS) from alignment at scaffold_11:237501..238890+

>mRNA_5658 ID=mRNA_5658|Name=jgi.p|Nanoce1779_2|670943|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_11:237501..238890+ (Nannochloropsis oceanica)
ATGCACACTAACATATATATATTTGCACATATACACACTCAAATAGACAC
ACCGCTGTGGCATCGCATTATGAATACCTCCAATCCACCCGACTCTTTCT
TGTTAGATTGTGTTCTCGGCTTCCCAACGAAAACCCCTGCGGAAATCGAC
AGCTTCATGAACCTTTACGCCAGGGAAGGTTACCATAGCAGCAGAAGTTC
TGTCAACTACCAAGACGAGCAAGGTCGAAGTCCCTTGGGAGTCGTGGCCA
CAATGGCCGGGCGCCCAATGGTAGACTTCGTGAAGATGTTGGTGGGACCG
CTAACGAAGCTGCGCATAAAAGATGCCCGGTTACGGACCCCTTTGTTGCT
TGCCGCTGAGAATGACCGTACAGAGATTTTCATCTATCTACTGGAGAGAC
TCTCACAATATGAGACGGGATGGCAGCTGACAGAGGAAAAGGATTGCTAT
CAACGTGGGCCGCTGCATTACATGTGCCAACACCGAAATGTGGCAGGAGT
GCGGGCCCTCCTTGCCGTGGCAGGGGCACCACCCGTCGGCGCCAAGGTAA
GAGAGGATGGGGAGGAAGAGAAGAAGAAGAAGGAGAGGATCAAGGTCGTG
GTCAATGCCAGGACAAGCAGTGGGGAGACGCCCCTCTTCTGGTTGGCACA
GTCATCAACCTTTTCGTCGCAAGAGAAAGAAAGGATGGAGGGCGGGGGAA
ATAGACAGAAAGAGAGAAGTAGCCGCGACTGCTCCTCCATTGACGACAAA
AACACGGCTGATGCTGTGGAGATCGCCGAGCTTCTCCTAGCGGCAGGTGC
AGACCCCCAGGTGGTCAACGCCATGGGCCAGAAGCCTATGGATGTACTGG
ATGAGGGGGAGGGGGATGATGGGAAGGAGGGAGGGGTGAAGAATCGGCTG
CAGGCATTGTTATCCCCTGAGAGAGTTTCAAGGGGGAGGGGAGAAACAGA
GAAGGAGGAGGAGGAAAAGGAGGAGCAGGAGGCTGAGAGGAAAGTCACAG
AGAAAAAAGGGTGTGAAAACAGTAGCATAGCGATCAATACGCCCTTTCCG
AAGACGGCTGCCGTAGCACCACCAGGAGGCATGCTGTCCTCCTTCCCCAC
CCGAGGAGTGGGATTCGATGCTGGTAACAGCAGTCGCATCGGCATTGGTA
GTGGTAGCAGGAGTGGCAGCAGTGGAGGTAGTGCCCCCAAGAGGCTGAAG
ATAAAGCTAAAGGCACCTGCGGCGAGAGCAAAAGATAAGTAA
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Synonyms
Publications