jgi.p|Nanoce1779_2|589860, mRNA_5656 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589860
Unique Name	mRNA_5656
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2381
Alignment location	scaffold_11:233205..235585 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589946
Track	FilteredModels2
ProteinId	589860

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:233205..235585 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589860	gene_5656	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589860	mRNA_5656-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5656	CDS_5656	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:233205..235585+
coding sequence from alignment at scaffold_11:233205..235585+

mRNA sequence

>mRNA_5656 ID=mRNA_5656|Name=jgi.p|Nanoce1779_2|589860|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp
CGCCTAGCTTCAACACGCCGAAGAGGAAGAAGAATAAAATGCCTGCCCTC
ACAACTCTTTCACAATCCCTACACCTCTCTCTCAAAATCAAGACGATGTG
GCCATCGTTGAAGCTTGTCCCTCTGCCGCTTTCCATTGTTGCAGTCGCCT
CATGGCAAGACCACCCCGCTGGTCGGGCGCTGGGTGTGACCCACGAATCC
TTCTGTTTGTCCTCGGCCGCGGTCACCAAGAAGCCTTTGGCAAGATTGCG
GCCCTCCTACGATAGCGAGGCATCTCTCTTGTCGCTCTCCACCATTTGGA
CCCATCCGACTCAAGTTGTGGCTTTTGCTATCAAGGCCTGGGTGCGGCAG
CGTTGGGAGCATGTGCTGGACTATCAGAACTTGTTGCGCGAAGACGAATG
CCCCATCACCCGGGAATACGACTGGAGACTCGTTGACTACAATGTAGAAC
CCCGTGGCCGGGCTTGGCATGATTTCCAAGAGCTTTCACAGGCCATGCGG
GAAGGAGGGAGAGAAGCCATGCCCAGCGTCGGGAGGACTCGGCAAGCATG
CAATTTTCTCTTAGACTGGGTTCGACAGCAGCTGGATACAGCGGTAGCCT
CCATACTAGAAGGCGTGAATCAGCTTCTGGTCATGCTCTGTGGTCGAATT
TTAGAAGCTGCATGGGCGTTTGTGTCAGGTGTTATGGGGTGGACAGGAGG
TTGGATTATGGCAATCGTTGGGGGCACCCTGCATGGCGTCTTTCAAATAA
TTCAAGCACTGTGGATTATGTCCATTGCCTTGCTTCGCCTCCGGTACCAA
TTCGTGGTCTTGGCTCTGGTTGCTGCCTGGAATCTGATCGCAGGCACGGT
TCTGGCGGTGTGGGGTTTTCTGGCGTCTTTGATGCAGGACGTCTTGCGGG
GCTCTATACACCATCTCGTGGAGGCCGAGGATACGCTGGTTACTGCTTTG
GGTGGCAGTATGAGCACGGCTTGCAACACAGTTGTCAGATGGGGTATGAT
ATTGCAGAATGCAGTCGTGGGAGGTTTTACGAGAGTGGGAGGGGCAGTGG
CGGCTGAGATTACGGATGTACGCAACTTGGTGATGGGGACCTGGGTTATG
ACCAAGGCGTTCGTTGCGGCCGTGCAACAATCGATAATCTCGATCATATG
GCAAGCTCAACAATCTGTCGTTCAAGCAGGCGCACACTTTGCGACAAGTG
TCCGCCACAGCATCGAAAATGTGCGGAAAAGCACTTTGCGCGCAGCCCAG
AGTATTGTTCCTCCAATGCCCACGGCATGGATCCGTACCTGGTGGCGTAT
GATATCTTTGACTGATGCCGCGTTGCCCTGGATCATAGCGGCTGTATCGT
GCGCCTTTGGATGCTATATGTGGTGGTGGGCGCGGCGGGCCGTGGCGACG
ACACCAGCACTAACTACAAAACTAGATGTGGGAGATGGAGGAGGAGTTGC
AGGACTAGTACGGATAGAGGGAGAGATAGAGGAGGAAAACCAAGGAGGGA
AAGAAGAAGCCATAAGTGAGCCGCAGGCCATGGCAACAATCCGTCATGCA
CCCTTACCATCACCCGTTCAAGTCCCTGCTAGGGAACCTGCAGGGGAAGT
GATGGAACGGCCGCCGGCAGCGGAAGAGAAGAAAGATGAAGAGGAAACGG
AGGAAGAGAAAGAGGAATGGCTACTCTTTTCTCGCCATCGTCAGCGCCAG
GTGGAACGGCCTATACCTGGAGAGAGGGCCTGCCCTTCATCACCGGTGCG
TGTTCAAGACCGAGAAGAAACAGCGACAATGGCCGCAGCGCGAAGCGTGC
AAACAGGGGAAGTCAGGTTGGAAACAGAAGAAGCCGCCACAGTCTTCTCT
TTGCCACCTCCTTCATTTCCAACATTGGCAGCTCCTTTGCCTCCTCCTCT
ACTTAAACCTCCACACCCTTCGCCGGCTCCTTCGAAGCCTACACTCATTC
CCCTCTGCGTTGCCCTCCCTTTCATCTGTGCGGTCTTGGGTGTGGAACAT
CCCGATACAGCAATAATGCGCGCAAGCATGGGTCCGAAGAGATGGGATGA
TTTCTTGACTTTGTATCGCCAAGATTTTGCAGACCGTGGTCTGGACACGG
ATGTGGAAGTGGCAAAACTAAAGCGACGGCCAGATGGGCGCTGTACCTTG
CCAGACTATGATATTAGGTATATGTTGTATCCGCCTGAATCTGATGTATC
CCCCTACGAGTTTTTGGAGTTTTGCACGGCGGCTGAAGCAGCAAACATCG
TTTGGGAGCGATGGAGAAAACTAGAGGCGGAAGCTGAAGATGCACCAACG
GTGGGAGGAGAGGAGGTGGGACAAGCGTGAAAGAAAAGGGAGCGGCATCA
CATCTATAAACCAAAAACTGAAAAACGCATT

protein sequence of jgi.p|Nanoce1779_2|589860

>mRNA_5656-protein ID=mRNA_5656-protein|Name=jgi.p|Nanoce1779_2|589860|organism=Nannochloropsis oceanica|type=polypeptide|length=764bp
MPALTTLSQSLHLSLKIKTMWPSLKLVPLPLSIVAVASWQDHPAGRALGV
THESFCLSSAAVTKKPLARLRPSYDSEASLLSLSTIWTHPTQVVAFAIKA
WVRQRWEHVLDYQNLLREDECPITREYDWRLVDYNVEPRGRAWHDFQELS
QAMREGGREAMPSVGRTRQACNFLLDWVRQQLDTAVASILEGVNQLLVML
CGRILEAAWAFVSGVMGWTGGWIMAIVGGTLHGVFQIIQALWIMSIALLR
LRYQFVVLALVAAWNLIAGTVLAVWGFLASLMQDVLRGSIHHLVEAEDTL
VTALGGSMSTACNTVVRWGMILQNAVVGGFTRVGGAVAAEITDVRNLVMG
TWVMTKAFVAAVQQSIISIIWQAQQSVVQAGAHFATSVRHSIENVRKSTL
RAAQSIVPPMPTAWIRTWWRMISLTDAALPWIIAAVSCAFGCYMWWWARR
AVATTPALTTKLDVGDGGGVAGLVRIEGEIEEENQGGKEEAISEPQAMAT
IRHAPLPSPVQVPAREPAGEVMERPPAAEEKKDEEETEEEKEEWLLFSRH
RQRQVERPIPGERACPSSPVRVQDREETATMAAARSVQTGEVRLETEEAA
TVFSLPPPSFPTLAAPLPPPLLKPPHPSPAPSKPTLIPLCVALPFICAVL
GVEHPDTAIMRASMGPKRWDDFLTLYRQDFADRGLDTDVEVAKLKRRPDG
RCTLPDYDIRYMLYPPESDVSPYEFLEFCTAAEAANIVWERWRKLEAEAE
DAPTVGGEEVGQA*

mRNA from alignment at scaffold_11:233205..235585+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5656 ID=mRNA_5656|Name=jgi.p|Nanoce1779_2|589860|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at scaffold_11:233205..235585+ (Nannochloropsis oceanica)
CGCCTAGCTTCAACACGCCGAAGAGGAAGAAGAATAAAATGCCTGCCCTC
ACAACTCTTTCACAATCCCTACACCTCTCTCTCAAAATCAAGACGATGTG
GCCATCGTTGAAGCTTGTCCCTCTGCCGCTTTCCATTGTTGCAGTCGCCT
CATGGCAAGACCACCCCGCTGGTCGGGCGCTGGGTGTGACCCACGAATCC
TTCTGTTTGTCCTCGGCCGCGGTCACCAAGAAGCCTTTGGCAAGATTGCG
GCCCTCCTACGATAGCGAGGCATCTCTCTTGTCGCTCTCCACCATTTGGA
CCCATCCGACTCAAGTTGTGGCTTTTGCTATCAAGGCCTGGGTGCGGCAG
CGTTGGGAGCATGTGCTGGACTATCAGAACTTGTTGCGCGAAGACGAATG
CCCCATCACCCGGGAATACGACTGGAGACTCGTTGACTACAATGTAGAAC
CCCGTGGCCGGGCTTGGCATGATTTCCAAGAGCTTTCACAGGCCATGCGG
GAAGGAGGGAGAGAAGCCATGCCCAGCGTCGGGAGGACTCGGCAAGCATG
CAATTTTCTCTTAGACTGGGTTCGACAGCAGCTGGATACAGCGGTAGCCT
CCATACTAGAAGGCGTGAATCAGCTTCTGGTCATGCTCTGTGGTCGAATT
TTAGAAGCTGCATGGGCGTTTGTGTCAGGTGTTATGGGGTGGACAGGAGG
TTGGATTATGGCAATCGTTGGGGGCACCCTGCATGGCGTCTTTCAAATAA
TTCAAGCACTGTGGATTATGTCCATTGCCTTGCTTCGCCTCCGGTACCAA
TTCGTGGTCTTGGCTCTGGTTGCTGCCTGGAATCTGATCGCAGGCACGGT
TCTGGCGGTGTGGGGTTTTCTGGCGTCTTTGATGCAGGACGTCTTGCGGG
GCTCTATACACCATCTCGTGGAGGCCGAGGATACGCTGGTTACTGCTTTG
GGTGGCAGTATGAGCACGGCTTGCAACACAGTTGTCAGATGGGGTATGAT
ATTGCAGAATGCAGTCGTGGGAGGTTTTACGAGAGTGGGAGGGGCAGTGG
CGGCTGAGATTACGGATGTACGCAACTTGGTGATGGGGACCTGGGTTATG
ACCAAGGCGTTCGTTGCGGCCGTGCAACAATCGATAATCTCGATCATATG
GCAAGCTCAACAATCTGTCGTTCAAGCAGGCGCACACTTTGCGACAAGTG
TCCGCCACAGCATCGAAAATGTGCGGAAAAGCACTTTGCGCGCAGCCCAG
AGTATTGTTCCTCCAATGCCCACGGCATGGATCCGTACCTGGTGGCGTAT
GATATCTTTGACTGATGCCGCGTTGCCCTGGATCATAGCGGCTGTATCGT
GCGCCTTTGGATGCTATATGTGGTGGTGGGCGCGGCGGGCCGTGGCGACG
ACACCAGCACTAACTACAAAACTAGATGTGGGAGATGGAGGAGGAGTTGC
AGGACTAGTACGGATAGAGGGAGAGATAGAGGAGGAAAACCAAGGAGGGA
AAGAAGAAGCCATAAGTGAGCCGCAGGCCATGGCAACAATCCGTCATGCA
CCCTTACCATCACCCGTTCAAGTCCCTGCTAGGGAACCTGCAGGGGAAGT
GATGGAACGGCCGCCGGCAGCGGAAGAGAAGAAAGATGAAGAGGAAACGG
AGGAAGAGAAAGAGGAATGGCTACTCTTTTCTCGCCATCGTCAGCGCCAG
GTGGAACGGCCTATACCTGGAGAGAGGGCCTGCCCTTCATCACCGGTGCG
TGTTCAAGACCGAGAAGAAACAGCGACAATGGCCGCAGCGCGAAGCGTGC
AAACAGGGGAAGTCAGGTTGGAAACAGAAGAAGCCGCCACAGTCTTCTCT
TTGCCACCTCCTTCATTTCCAACATTGGCAGCTCCTTTGCCTCCTCCTCT
ACTTAAACCTCCACACCCTTCGCCGGCTCCTTCGAAGCCTACACTCATTC
CCCTCTGCGTTGCCCTCCCTTTCATCTGTGCGGTCTTGGGTGTGGAACAT
CCCGATACAGCAATAATGCGCGCAAGCATGGGTCCGAAGAGATGGGATGA
TTTCTTGACTTTGTATCGCCAAGATTTTGCAGACCGTGGTCTGGACACGG
ATGTGGAAGTGGCAAAACTAAAGCGACGGCCAGATGGGCGCTGTACCTTG
CCAGACTATGATATTAGGTATATGTTGTATCCGCCTGAATCTGATGTATC
CCCCTACGAGTTTTTGGAGTTTTGCACGGCGGCTGAAGCAGCAAACATCG
TTTGGGAGCGATGGAGAAAACTAGAGGCGGAAGCTGAAGATGCACCAACG
GTGGGAGGAGAGGAGGTGGGACAAGCGTGAAAGAAAAGGGAGCGGCATCA
CATCTATAAACCAAAAACTGAAAAACGCATT

Coding sequence (CDS) from alignment at scaffold_11:233205..235585+

>mRNA_5656 ID=mRNA_5656|Name=jgi.p|Nanoce1779_2|589860|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_11:233205..235585+ (Nannochloropsis oceanica)
ATGCCTGCCCTCACAACTCTTTCACAATCCCTACACCTCTCTCTCAAAAT
CAAGACGATGTGGCCATCGTTGAAGCTTGTCCCTCTGCCGCTTTCCATTG
TTGCAGTCGCCTCATGGCAAGACCACCCCGCTGGTCGGGCGCTGGGTGTG
ACCCACGAATCCTTCTGTTTGTCCTCGGCCGCGGTCACCAAGAAGCCTTT
GGCAAGATTGCGGCCCTCCTACGATAGCGAGGCATCTCTCTTGTCGCTCT
CCACCATTTGGACCCATCCGACTCAAGTTGTGGCTTTTGCTATCAAGGCC
TGGGTGCGGCAGCGTTGGGAGCATGTGCTGGACTATCAGAACTTGTTGCG
CGAAGACGAATGCCCCATCACCCGGGAATACGACTGGAGACTCGTTGACT
ACAATGTAGAACCCCGTGGCCGGGCTTGGCATGATTTCCAAGAGCTTTCA
CAGGCCATGCGGGAAGGAGGGAGAGAAGCCATGCCCAGCGTCGGGAGGAC
TCGGCAAGCATGCAATTTTCTCTTAGACTGGGTTCGACAGCAGCTGGATA
CAGCGGTAGCCTCCATACTAGAAGGCGTGAATCAGCTTCTGGTCATGCTC
TGTGGTCGAATTTTAGAAGCTGCATGGGCGTTTGTGTCAGGTGTTATGGG
GTGGACAGGAGGTTGGATTATGGCAATCGTTGGGGGCACCCTGCATGGCG
TCTTTCAAATAATTCAAGCACTGTGGATTATGTCCATTGCCTTGCTTCGC
CTCCGGTACCAATTCGTGGTCTTGGCTCTGGTTGCTGCCTGGAATCTGAT
CGCAGGCACGGTTCTGGCGGTGTGGGGTTTTCTGGCGTCTTTGATGCAGG
ACGTCTTGCGGGGCTCTATACACCATCTCGTGGAGGCCGAGGATACGCTG
GTTACTGCTTTGGGTGGCAGTATGAGCACGGCTTGCAACACAGTTGTCAG
ATGGGGTATGATATTGCAGAATGCAGTCGTGGGAGGTTTTACGAGAGTGG
GAGGGGCAGTGGCGGCTGAGATTACGGATGTACGCAACTTGGTGATGGGG
ACCTGGGTTATGACCAAGGCGTTCGTTGCGGCCGTGCAACAATCGATAAT
CTCGATCATATGGCAAGCTCAACAATCTGTCGTTCAAGCAGGCGCACACT
TTGCGACAAGTGTCCGCCACAGCATCGAAAATGTGCGGAAAAGCACTTTG
CGCGCAGCCCAGAGTATTGTTCCTCCAATGCCCACGGCATGGATCCGTAC
CTGGTGGCGTATGATATCTTTGACTGATGCCGCGTTGCCCTGGATCATAG
CGGCTGTATCGTGCGCCTTTGGATGCTATATGTGGTGGTGGGCGCGGCGG
GCCGTGGCGACGACACCAGCACTAACTACAAAACTAGATGTGGGAGATGG
AGGAGGAGTTGCAGGACTAGTACGGATAGAGGGAGAGATAGAGGAGGAAA
ACCAAGGAGGGAAAGAAGAAGCCATAAGTGAGCCGCAGGCCATGGCAACA
ATCCGTCATGCACCCTTACCATCACCCGTTCAAGTCCCTGCTAGGGAACC
TGCAGGGGAAGTGATGGAACGGCCGCCGGCAGCGGAAGAGAAGAAAGATG
AAGAGGAAACGGAGGAAGAGAAAGAGGAATGGCTACTCTTTTCTCGCCAT
CGTCAGCGCCAGGTGGAACGGCCTATACCTGGAGAGAGGGCCTGCCCTTC
ATCACCGGTGCGTGTTCAAGACCGAGAAGAAACAGCGACAATGGCCGCAG
CGCGAAGCGTGCAAACAGGGGAAGTCAGGTTGGAAACAGAAGAAGCCGCC
ACAGTCTTCTCTTTGCCACCTCCTTCATTTCCAACATTGGCAGCTCCTTT
GCCTCCTCCTCTACTTAAACCTCCACACCCTTCGCCGGCTCCTTCGAAGC
CTACACTCATTCCCCTCTGCGTTGCCCTCCCTTTCATCTGTGCGGTCTTG
GGTGTGGAACATCCCGATACAGCAATAATGCGCGCAAGCATGGGTCCGAA
GAGATGGGATGATTTCTTGACTTTGTATCGCCAAGATTTTGCAGACCGTG
GTCTGGACACGGATGTGGAAGTGGCAAAACTAAAGCGACGGCCAGATGGG
CGCTGTACCTTGCCAGACTATGATATTAGGTATATGTTGTATCCGCCTGA
ATCTGATGTATCCCCCTACGAGTTTTTGGAGTTTTGCACGGCGGCTGAAG
CAGCAAACATCGTTTGGGAGCGATGGAGAAAACTAGAGGCGGAAGCTGAA
GATGCACCAACGGTGGGAGGAGAGGAGGTGGGACAAGCGTGA

Synonyms

Publications