jgi.p|Nanoce1779_2|589858, mRNA_5655 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589858
Unique Name	mRNA_5655
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1217
Alignment location	scaffold_11:231739..233219 +

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Properties


Property Name	Value
TranscriptId	589944
Track	FilteredModels2
ProteinId	589858

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:231739..233219 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589858	gene_5655	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589858	mRNA_5655-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5655	CDS_5655	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:231739..233219+
coding sequence from alignment at scaffold_11:231739..233219+

mRNA sequence

>mRNA_5655 ID=mRNA_5655|Name=jgi.p|Nanoce1779_2|589858|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp
CATGTCCACCCTCGGCAGCTTCTTGAAACGCGTCGTCTCCACGCTCCTCC
TCCCCCTCGCTCCCTCCCCCCCTCCCTCCTTCACCACCACCTTCGAGAGA
GAGTACGGCCCCCACCATCCCCCCTTCCTCGAATCTACCTCCCTCCTCCA
TGCTCTCGCCTCCGCTCGAGCCTCCTGCCGCTTGCTGATCGTCTACCTCC
CGTCTTCCTCCCCGCGTGACGACAAGAGGCACAAAGCCTTCTGCCGGACT
TTGACCGACCCCGACCTCATTCGCTTCCTCCTTCCTGCCTTCGTCCTTTG
GTCCCCCCCCCCCTCATCTACGGCCCATAAACTGGCCATGAAAGAGTTGT
CGGTCCGACGATTACCGTACTTGGGGGTGGTGCATGGAGGGAGGGAGGCA
GGTAGGAAGGTAAGCGTGAAGAGCTTGCATCATTTCAAACCGCCCCCGTC
CCCGGAGCAGGCGGTGGTGTGGTTGAACAGAACATTAGAGATCCACGGCC
ATGTCCTAGAAGAGGACAAAAAGGATCGCGCTTTTGTTCTCAGTGAAAAG
AAGCTTCAGATCGAGCAAAAACAAGAGTACAGCAAAGCCTTGCTGGCTGA
CCGAGAAAGAGAAGCCACCGAAAAAGCTAAAGCAGCAGCAGCAGCAGCAG
CAGCCGAAACGAAGAAGCAGGAAGACGAGACACGACGGGCGAGAAAGAAG
TTGGCTTTGGGGAATGAACCCAAGGAATGGAAAGCGGAGGATGATGAGAT
CTGCTGCAAAATTGCCGCGCGGATGCCACAGAGGGGGGGAGGGAAGGAGG
GAGGAAAGAAGGTTCAAAGGACATTCCGGGCGACTGATGTGCTAGAAAAG
GTGTTCGATTGGTTGGACGTCGAAGGGTTGGAGGAGCTGCGAGGGGCAAA
GGTAGTATTGGCAGGAGGGAGAGGAAGGGGAGTAAGGATGGCATACGTCT
ATCCAGAGGACAAGCATAAGACGCTTGGGGAGGCGGGCATTGAGGGACAG
GTTTCGTTGCTTGTGGAGAGTGGAGGAGGAGGAGCGAAGTAAGGGAGATG
GAAAAAGATAACTCAGTAAAATAAAGCACGATGATAAATTTGGTAAATAA
GACAAAAAAAATATTCGAAAAATAGAAATACCAAATGCTGGCATAGTTTT
CCAAAACAGCTGGCACTTACTCTTACAAGTCTACAAGTCTCGCGAAGAAC
GCCGCCTAGCTTCAACA

protein sequence of jgi.p|Nanoce1779_2|589858

>mRNA_5655-protein ID=mRNA_5655-protein|Name=jgi.p|Nanoce1779_2|589858|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MSTLGSFLKRVVSTLLLPLAPSPPPSFTTTFEREYGPHHPPFLESTSLLH
ALASARASCRLLIVYLPSSSPRDDKRHKAFCRTLTDPDLIRFLLPAFVLW
SPPPSSTAHKLAMKELSVRRLPYLGVVHGGREAGRKVSVKSLHHFKPPPS
PEQAVVWLNRTLEIHGHVLEEDKKDRAFVLSEKKLQIEQKQEYSKALLAD
REREATEKAKAAAAAAAAETKKQEDETRRARKKLALGNEPKEWKAEDDEI
CCKIAARMPQRGGGKEGGKKVQRTFRATDVLEKVFDWLDVEGLEELRGAK
VVLAGGRGRGVRMAYVYPEDKHKTLGEAGIEGQVSLLVESGGGGAK*

mRNA from alignment at scaffold_11:231739..233219+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5655 ID=mRNA_5655|Name=jgi.p|Nanoce1779_2|589858|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at scaffold_11:231739..233219+ (Nannochloropsis oceanica)
CATGTCCACCCTCGGCAGCTTCTTGAAACGCGTCGTCTCCACGCTCCTCC
TCCCCCTCGCTCCCTCCCCCCCTCCCTCCTTCACCACCACCTTCGAGAGA
GAGTACGGCCCCCACCATCCCCCCTTCCTCGAATCTACCTCCCTCCTCCA
TGCTCTCGCCTCCGCTCGAGCCTCCTGCCGCTTGCTGATCGTCTACCTCC
CGTCTTCCTCCCCGCGTGACGACAAGAGGCACAAAGCCTTCTGCCGGACT
TTGACCGACCCCGACCTCATTCGCTTCCTCCTTCCTGCCTTCGTCCTTTG
GTCCCCCCCCCCCTCATCTACGGCCCATAAACTGGCCATGAAAGAGTTGT
CGGTCCGACGATTACCGTACTTGGGGGTGGTGCATGGAGGGAGGGAGGCA
GGTAGGAAGGTAAGCGTGAAGAGCTTGCATCATTTCAAACCGCCCCCGTC
CCCGGAGCAGGCGGTGGTGTGGTTGAACAGAACATTAGAGGTAAGGAGAG
AGAGGGGGGGGAAGGGAGGGGGGGAGGGAGAGAGGGAGGGATCGGCGAGT
ACTCTTTGGCATGCCCATCGATTTGTTTACAAAGTAAATTAAAACTGTCC
ATTTCCCTCCCCCCCTCCCTTCCTCCCCCCTTTTCTTAGATCCACGGCCA
TGTCCTAGAAGAGGACAAAAAGGATCGCGCTTTTGTTCTCAGTGAAAAGA
AGCTTCAGGTATGGTCCATCCCTTCTTTTCTTATTCTTTCCCTCCCCTTC
TCCACATCTTTTACCTCTCCCCCTTCCTTTTCCCCACCCTCCTCCTCTTC
TCTTACTGTAGATCGAGCAAAAACAAGAGTACAGCAAAGCCTTGCTGGCT
GACCGAGAAAGAGAAGCCACCGAAAAAGCTAAAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCCGAAACGAAGAAGCAGGAAGACGAGACACGAC
GGGCGAGAAAGAAGTTGGCTTTGGGGAATGAACCCAAGGAATGGAAAGCG
GAGGATGATGAGATCTGCTGCAAAATTGCCGCGCGGATGCCACAGAGGGG
GGGAGGGAAGGAGGGAGGAAAGAAGGTTCAAAGGACATTCCGGGCGACTG
ATGTGCTAGAAAAGGTGTTCGATTGGTTGGACGTCGAAGGGTTGGAGGAG
CTGCGAGGGGCAAAGGTAGTATTGGCAGGAGGGAGAGGAAGGGGAGTAAG
GATGGCATACGTCTATCCAGAGGACAAGCATAAGACGCTTGGGGAGGCGG
GCATTGAGGGACAGGTTTCGTTGCTTGTGGAGAGTGGAGGAGGAGGAGCG
AAGTAAGGGAGATGGAAAAAGATAACTCAGTAAAATAAAGCACGATGATA
AATTTGGTAAATAAGACAAAAAAAATATTCGAAAAATAGAAATACCAAAT
GCTGGCATAGTTTTCCAAAACAGCTGGCACTTACTCTTACAAGTCTACAA
GTCTCGCGAAGAACGCCGCCTAGCTTCAACA

Coding sequence (CDS) from alignment at scaffold_11:231739..233219+

>mRNA_5655 ID=mRNA_5655|Name=jgi.p|Nanoce1779_2|589858|organism=Nannochloropsis oceanica|type=CDS|length=4164bp|location=Sequence derived from alignment at scaffold_11:231739..233219+ (Nannochloropsis oceanica)
ATGTCCACCCTCGGCAGCTTCTTGAAACGCGTCGTCTCCACGCTCCTCCT
CCCCCTCGCTCCCTCCCCCCCTCCCTCCTTCACCACCACCTTCGAGAGAG
AGTACGGCCCCCACCATCCCCCCTTCCTCGAATCTACCTCCCTCCTCCAT
GCTCTCGCCTCCGCTCGAGCCTCCTGCCGCTTGCTGATCGTCTACCTCCC
GTCTTCCTCCCCGCGTGACGACAAGAGGCACAAAGCCTTCTGCCGGACTT
TGACCGACCCCGACCTCATTCGCTTCCTCCTTCCTGCCTTCGTCCTTTGG
TCCCCCCCCCCCTCATCTACGGCCCATAAACTGGCCATGAAAGAGTTGTC
GGTCCGACGATTACCGTACTTGGGGGTGGTGCATGGAGGGAGGGAGGCAG
GTAGGAAGGTAAGCGTGAAGAGCTTGCATCATTTCAAACCGCCCCCGTCC
CCGGAGCAGGCGGTGGTGTGGTTGAACAGAACATTAGAGATCCACGGCCA
TGTCCTAGAAGAGGACAAAAAGGATCGCGCTTTTGTTCTCAGTGAAAAGA
AGCTTCAGATCGAGCAAAAACAAGAGTACAGCAAAGCCTTGCTGGCTGAC
CGAGAAAGAGAAGCCACCGAAAAAGCTAAAGCAGCAGCAGCAGCAGCAGC
AGCCGAAACGAAGAAGCAGGAAGACGAGACACGACGGGCGAGAAAGAAGT
TGGCTTTGGGGAATGAACCCAAGGAATGGAAAGCGGAGGATGATGAGATC
TGCTGCAAAATTGCCGCGCGGATGCCACAGAGGGGGGGAGGGAAGGAGGG
AGGAAAGAAGGTTCAAAGGACATTCCGGGCGACTGATGTGCTAGAAAAGG
TGTTCGATTGGTTGGACGTCGAAGGGTTGGAGGAGCTGCGAGGGGCAAAG
GTAGTATTGGCAGGAGGGAGAGGAAGGGGAGTAAGGATGGCATACGTCTA
TCCAGAGGACAAGCATAAGACGCTTGGGGAGGCGGGCATTGAGGGACAGG
TTTCGTTGCTTGTGGAGAGTGGAGGAGGAGGAGCGAAGTAAATGTCCACC
CTCGGCAGCTTCTTGAAACGCGTCGTCTCCACGCTCCTCCTCCCCCTCGC
TCCCTCCCCCCCTCCCTCCTTCACCACCACCTTCGAGAGAGAGTACGGCC
CCCACCATCCCCCCTTCCTCGAATCTACCTCCCTCCTCCATGCTCTCGCC
TCCGCTCGAGCCTCCTGCCGCTTGCTGATCGTCTACCTCCCGTCTTCCTC
CCCGCGTGACGACAAGAGGCACAAAGCCTTCTGCCGGACTTTGACCGACC
CCGACCTCATTCGCTTCCTCCTTCCTGCCTTCGTCCTTTGGTCCCCCCCC
CCCTCATCTACGGCCCATAAACTGGCCATGAAAGAGTTGTCGGTCCGACG
ATTACCGTACTTGGGGGTGGTGCATGGAGGGAGGGAGGCAGGTAGGAAGG
TAAGCGTGAAGAGCTTGCATCATTTCAAACCGCCCCCGTCCCCGGAGCAG
GCGGTGGTGTGGTTGAACAGAACATTAGAGATCCACGGCCATGTCCTAGA
AGAGGACAAAAAGGATCGCGCTTTTGTTCTCAGTGAAAAGAAGCTTCAGA
TCGAGCAAAAACAAGAGTACAGCAAAGCCTTGCTGGCTGACCGAGAAAGA
GAAGCCACCGAAAAAGCTAAAGCAGCAGCAGCAGCAGCAGCAGCCGAAAC
GAAGAAGCAGGAAGACGAGACACGACGGGCGAGAAAGAAGTTGGCTTTGG
GGAATGAACCCAAGGAATGGAAAGCGGAGGATGATGAGATCTGCTGCAAA
ATTGCCGCGCGGATGCCACAGAGGGGGGGAGGGAAGGAGGGAGGAAAGAA
GGTTCAAAGGACATTCCGGGCGACTGATGTGCTAGAAAAGGTGTTCGATT
GGTTGGACGTCGAAGGGTTGGAGGAGCTGCGAGGGGCAAAGGTAGTATTG
GCAGGAGGGAGAGGAAGGGGAGTAAGGATGGCATACGTCTATCCAGAGGA
CAAGCATAAGACGCTTGGGGAGGCGGGCATTGAGGGACAGGTTTCGTTGC
TTGTGGAGAGTGGAGGAGGAGGAGCGAAGTAAATGTCCACCCTCGGCAGC
TTCTTGAAACGCGTCGTCTCCACGCTCCTCCTCCCCCTCGCTCCCTCCCC
CCCTCCCTCCTTCACCACCACCTTCGAGAGAGAGTACGGCCCCCACCATC
CCCCCTTCCTCGAATCTACCTCCCTCCTCCATGCTCTCGCCTCCGCTCGA
GCCTCCTGCCGCTTGCTGATCGTCTACCTCCCGTCTTCCTCCCCGCGTGA
CGACAAGAGGCACAAAGCCTTCTGCCGGACTTTGACCGACCCCGACCTCA
TTCGCTTCCTCCTTCCTGCCTTCGTCCTTTGGTCCCCCCCCCCCTCATCT
ACGGCCCATAAACTGGCCATGAAAGAGTTGTCGGTCCGACGATTACCGTA
CTTGGGGGTGGTGCATGGAGGGAGGGAGGCAGGTAGGAAGGTAAGCGTGA
AGAGCTTGCATCATTTCAAACCGCCCCCGTCCCCGGAGCAGGCGGTGGTG
TGGTTGAACAGAACATTAGAGATCCACGGCCATGTCCTAGAAGAGGACAA
AAAGGATCGCGCTTTTGTTCTCAGTGAAAAGAAGCTTCAGATCGAGCAAA
AACAAGAGTACAGCAAAGCCTTGCTGGCTGACCGAGAAAGAGAAGCCACC
GAAAAAGCTAAAGCAGCAGCAGCAGCAGCAGCAGCCGAAACGAAGAAGCA
GGAAGACGAGACACGACGGGCGAGAAAGAAGTTGGCTTTGGGGAATGAAC
CCAAGGAATGGAAAGCGGAGGATGATGAGATCTGCTGCAAAATTGCCGCG
CGGATGCCACAGAGGGGGGGAGGGAAGGAGGGAGGAAAGAAGGTTCAAAG
GACATTCCGGGCGACTGATGTGCTAGAAAAGGTGTTCGATTGGTTGGACG
TCGAAGGGTTGGAGGAGCTGCGAGGGGCAAAGGTAGTATTGGCAGGAGGG
AGAGGAAGGGGAGTAAGGATGGCATACGTCTATCCAGAGGACAAGCATAA
GACGCTTGGGGAGGCGGGCATTGAGGGACAGGTTTCGTTGCTTGTGGAGA
GTGGAGGAGGAGGAGCGAAGTAAATGTCCACCCTCGGCAGCTTCTTGAAA
CGCGTCGTCTCCACGCTCCTCCTCCCCCTCGCTCCCTCCCCCCCTCCCTC
CTTCACCACCACCTTCGAGAGAGAGTACGGCCCCCACCATCCCCCCTTCC
TCGAATCTACCTCCCTCCTCCATGCTCTCGCCTCCGCTCGAGCCTCCTGC
CGCTTGCTGATCGTCTACCTCCCGTCTTCCTCCCCGCGTGACGACAAGAG
GCACAAAGCCTTCTGCCGGACTTTGACCGACCCCGACCTCATTCGCTTCC
TCCTTCCTGCCTTCGTCCTTTGGTCCCCCCCCCCCTCATCTACGGCCCAT
AAACTGGCCATGAAAGAGTTGTCGGTCCGACGATTACCGTACTTGGGGGT
GGTGCATGGAGGGAGGGAGGCAGGTAGGAAGGTAAGCGTGAAGAGCTTGC
ATCATTTCAAACCGCCCCCGTCCCCGGAGCAGGCGGTGGTGTGGTTGAAC
AGAACATTAGAGATCCACGGCCATGTCCTAGAAGAGGACAAAAAGGATCG
CGCTTTTGTTCTCAGTGAAAAGAAGCTTCAGATCGAGCAAAAACAAGAGT
ACAGCAAAGCCTTGCTGGCTGACCGAGAAAGAGAAGCCACCGAAAAAGCT
AAAGCAGCAGCAGCAGCAGCAGCAGCCGAAACGAAGAAGCAGGAAGACGA
GACACGACGGGCGAGAAAGAAGTTGGCTTTGGGGAATGAACCCAAGGAAT
GGAAAGCGGAGGATGATGAGATCTGCTGCAAAATTGCCGCGCGGATGCCA
CAGAGGGGGGGAGGGAAGGAGGGAGGAAAGAAGGTTCAAAGGACATTCCG
GGCGACTGATGTGCTAGAAAAGGTGTTCGATTGGTTGGACGTCGAAGGGT
TGGAGGAGCTGCGAGGGGCAAAGGTAGTATTGGCAGGAGGGAGAGGAAGG
GGAGTAAGGATGGCATACGTCTATCCAGAGGACAAGCATAAGACGCTTGG
GGAGGCGGGCATTGAGGGACAGGTTTCGTTGCTTGTGGAGAGTGGAGGAG
GAGGAGCGAAGTAA

Synonyms

Publications