jgi.p|Nanoce1779_2|566010, mRNA_5653 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566010
Unique NamemRNA_5653
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length858
Alignment locationscaffold_11:225963..226820 +

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Properties
Property NameValue
TranscriptId566096
TrackFilteredModels2
ProteinId566010
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:225963..226820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566010gene_5653Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566010mRNA_5653-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5653CDS_5653Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5653 ID=mRNA_5653|Name=jgi.p|Nanoce1779_2|566010|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ATGGCTGCTGTCTTGCCCGACAGCTCCGCGATTTTGCGGGATGTGGGCAC
GTGGCTTCATGACTTTGACGCTCTTAAGCATGAGATTGCCCGAGAAGAGC
AGGACTTGGCGACATATGTACAAGTGCGCATGGACCAGCAGCAAGCACAT
CAACAAGCCAAGGAAGTGCGTCGTGCCGCGACCAAGGCGGTGGAAGAGGC
CGAGCTTCAACATAAAATCCAAGCGACGCGGCGAGGGGCCGAACGGCATC
AGGAACTCCGTCCGCTGACGGAGCGGCTGGCTATGGAGAAAGAAGACACC
ACCGCGCAAATGGGGGAGCATTTCCTACGCTATTTGGAGGAGGCTGAAGA
GGGCTTTAATGGTGGCAAGGGAGATGGTGTATTGTGGGAGGACGTGCTCG
CGGTACTGCGTGCGTCCGGGCCCTCAATGCCGTTGGATCTCAAGTTGGGT
CTTCTGCTGCGACAGAAGTCGCTTCAGATGGGTGATGGAATGATGAAAGG
AGAGGATGTAACTGGTGAGGCGTTTTGTGGTCGAAACCCGGTCGAAGACG
AGGTGGAGAGGATTAAGCGTTTGAACGAGGAGCTGGGCTCTTCACAAGGA
GACGACGTGGCAGAGCAACGGTTGCTGCAGGTGGCAAGTCGTTGGCTGGG
TCCCGGGATCAAGGCCAACAAATGCTTGGCCTCCTTGCAGGTGATGAAAA
TGGATTCAAATGCAGCGGCAAGTTTCACATCCGCAACAGTTGCATCAGCT
GTTGCGCGCTCAGTCATTCCACTCGACGACCGCTCGGAATTGTTGGCTGC
ATTACGGGGACGAGGATGCGGAAGTAGCCGGGGATGTGGACTCGGTCGTG
GGGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|566010

>mRNA_5653-protein ID=mRNA_5653-protein|Name=jgi.p|Nanoce1779_2|566010|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MAAVLPDSSAILRDVGTWLHDFDALKHEIAREEQDLATYVQVRMDQQQAH
QQAKEVRRAATKAVEEAELQHKIQATRRGAERHQELRPLTERLAMEKEDT
TAQMGEHFLRYLEEAEEGFNGGKGDGVLWEDVLAVLRASGPSMPLDLKLG
LLLRQKSLQMGDGMMKGEDVTGEAFCGRNPVEDEVERIKRLNEELGSSQG
DDVAEQRLLQVASRWLGPGIKANKCLASLQVMKMDSNAAASFTSATVASA
VARSVIPLDDRSELLAALRGRGCGSSRGCGLGRGG*
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mRNA from alignment at scaffold_11:225963..226820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5653 ID=mRNA_5653|Name=jgi.p|Nanoce1779_2|566010|organism=Nannochloropsis oceanica|type=mRNA|length=858bp|location=Sequence derived from alignment at scaffold_11:225963..226820+ (Nannochloropsis oceanica)
ATGGCTGCTGTCTTGCCCGACAGCTCCGCGATTTTGCGGGATGTGGGCAC
GTGGCTTCATGACTTTGACGCTCTTAAGCATGAGATTGCCCGAGAAGAGC
AGGACTTGGCGACATATGTACAAGTGCGCATGGACCAGCAGCAAGCACAT
CAACAAGCCAAGGAAGTGCGTCGTGCCGCGACCAAGGCGGTGGAAGAGGC
CGAGCTTCAACATAAAATCCAAGCGACGCGGCGAGGGGCCGAACGGCATC
AGGAACTCCGTCCGCTGACGGAGCGGCTGGCTATGGAGAAAGAAGACACC
ACCGCGCAAATGGGGGAGCATTTCCTACGCTATTTGGAGGAGGCTGAAGA
GGGCTTTAATGGTGGCAAGGGAGATGGTGTATTGTGGGAGGACGTGCTCG
CGGTACTGCGTGCGTCCGGGCCCTCAATGCCGTTGGATCTCAAGTTGGGT
CTTCTGCTGCGACAGAAGTCGCTTCAGATGGGTGATGGAATGATGAAAGG
AGAGGATGTAACTGGTGAGGCGTTTTGTGGTCGAAACCCGGTCGAAGACG
AGGTGGAGAGGATTAAGCGTTTGAACGAGGAGCTGGGCTCTTCACAAGGA
GACGACGTGGCAGAGCAACGGTTGCTGCAGGTGGCAAGTCGTTGGCTGGG
TCCCGGGATCAAGGCCAACAAATGCTTGGCCTCCTTGCAGGTGATGAAAA
TGGATTCAAATGCAGCGGCAAGTTTCACATCCGCAACAGTTGCATCAGCT
GTTGCGCGCTCAGTCATTCCACTCGACGACCGCTCGGAATTGTTGGCTGC
ATTACGGGGACGAGGATGCGGAAGTAGCCGGGGATGTGGACTCGGTCGTG
GGGGGTAG
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Coding sequence (CDS) from alignment at scaffold_11:225963..226820+

>mRNA_5653 ID=mRNA_5653|Name=jgi.p|Nanoce1779_2|566010|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_11:225963..226820+ (Nannochloropsis oceanica)
ATGGCTGCTGTCTTGCCCGACAGCTCCGCGATTTTGCGGGATGTGGGCAC
GTGGCTTCATGACTTTGACGCTCTTAAGCATGAGATTGCCCGAGAAGAGC
AGGACTTGGCGACATATGTACAAGTGCGCATGGACCAGCAGCAAGCACAT
CAACAAGCCAAGGAAGTGCGTCGTGCCGCGACCAAGGCGGTGGAAGAGGC
CGAGCTTCAACATAAAATCCAAGCGACGCGGCGAGGGGCCGAACGGCATC
AGGAACTCCGTCCGCTGACGGAGCGGCTGGCTATGGAGAAAGAAGACACC
ACCGCGCAAATGGGGGAGCATTTCCTACGCTATTTGGAGGAGGCTGAAGA
GGGCTTTAATGGTGGCAAGGGAGATGGTGTATTGTGGGAGGACGTGCTCG
CGGTACTGCGTGCGTCCGGGCCCTCAATGCCGTTGGATCTCAAGTTGGGT
CTTCTGCTGCGACAGAAGTCGCTTCAGATGGGTGATGGAATGATGAAAGG
AGAGGATGTAACTGGTGAGGCGTTTTGTGGTCGAAACCCGGTCGAAGACG
AGGTGGAGAGGATTAAGCGTTTGAACGAGGAGCTGGGCTCTTCACAAGGA
GACGACGTGGCAGAGCAACGGTTGCTGCAGGTGGCAAGTCGTTGGCTGGG
TCCCGGGATCAAGGCCAACAAATGCTTGGCCTCCTTGCAGGTGATGAAAA
TGGATTCAAATGCAGCGGCAAGTTTCACATCCGCAACAGTTGCATCAGCT
GTTGCGCGCTCAGTCATTCCACTCGACGACCGCTCGGAATTGTTGGCTGC
ATTACGGGGACGAGGATGCGGAAGTAGCCGGGGATGTGGACTCGGTCGTG
GGGGGTAG
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Synonyms
Publications