jgi.p|Nanoce1779_2|589850, mRNA_5652 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589850
Unique Name	mRNA_5652
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2176
Alignment location	scaffold_11:225446..227621 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589936
Track	FilteredModels2
ProteinId	589850

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:225446..227621 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589850	gene_5652	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589850	mRNA_5652-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5652	CDS_5652	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:225446..227621+
coding sequence from alignment at scaffold_11:225446..227621+

mRNA sequence

>mRNA_5652 ID=mRNA_5652|Name=jgi.p|Nanoce1779_2|589850|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp
GGAGCAAAAAAAGCTGATCCAAGCAGCTGGTTACACACACGATCTTATCA
AGCATGCACCTGTTACGATGCCCGACGATGTGACGCCATATCCTCCCACA
CCTCCTATATCCTTGCACGAGGTAGAGCTGTTCATGCTGGCCACCATGAA
GGTACCAAGGATGGGACCCAAGGTGCGGTGCTTCCACTTTAAGCAGGCAT
TTCAGGAGTCTTTGCAGACATTACGTGCCAAAATGGAAGCTTTGGCAGGC
ATTTTGGGGGACGTGGTGAAGTCAAACCGATTGGTACGCGTACTGGAAGT
CTTACTTTACCCTGGTAATACTCTTAAGGCATATTCTGGCTCGAGCAGTA
AGAGGGTGGTGGTCAAGGTATTTACCATCGACTCACTCTTTCGCGTCGCT
CTGATGAAGTCCACAACTTCTGGAGACATGACTTAACTCGATTACCTCGT
CCGGCTCGCTGCGGAAAAAGGGGAAGGGGCCATCTTGATTGTAGTCGAAG
ATATACCGACTCTGTGTATGGCTGCTGTCTTGCCCGACAGCTCCGCGATT
TTGCGGGATGTGGGCACGTGGCTTCATGACTTTGACGCTCTTAAGCATGA
GATTGCCCGAGAAGAGCAGGACTTGGCGACATATGTACAAGTGCGCATGG
ACCAGCAGCAAGCACATCAACAAGCCAAGGAAGTGCGTCGTGCCGCGACC
AAGGCGGTGGAAGAGGCCGAGCTTCAACATAAAATCCAAGCGACGCGGCG
AGGGGCCGAACGGCATCAGGAACTCCGTCCGCTGACGGAGCGGCTGGCTA
TGGAGAAAGAAGACACCACCGCGCAAATGGGGGAGCATTTCCTACGCTAT
TTGGAGGAGGCTGAAGAGGGCTTTAATGGTGGCAAGGGAGATGGTGTATT
GTGGGAGGACGTGCTCGCGGTACTGCGTGCGTCCGGGCCCTCAATGCCGT
TGGATCTCAAGTTGGGTCTTCTGCTGCGACAGAAGTCGCTTCAGATGGGT
GATGGAATGATGAAAGGAGAGGATGTAACTGGTGAGGCGTTTTGTGGTCG
AAACCCGGTCGAAGACGAGGTGGAGAGGATTAAGCGTTTGAACGAGGAGC
TGGGCTCTTCACAAGGAGACGACGTGGCAGAGCAACGGTTGCTGCAGGTG
GCAAGTCGTTGGCTGGGTCCCGGGATCAAGGCCAACAAATGCTTGGCCTC
CTTGCAGGTGATGAAAATGGATTCAAATGCAGCGGCAAGTTTCACATCCG
CAACAGTTGCATCAGCTGTTGCGCGCTCAGTCATTCCACTCGACGACCGC
TCGGAATTGTTGGCTGCATTACGGGGACGAGGATGCGGAAGTAGCCGGGG
ATGTGGACTCGGTCGTGGGGGGTAGCGGGCAGAAGCGGACTCTCGGGGCT
GCGTTGACAACGGCATGCCACAACGCTGTCGGCGATTAGCATGTACTCTA
CGAAGTGGAGCGGGGGACATTTTAACAGAATCTGAAAGTTTTTGTCTCTT
CTACTGAAGCGCAGATTCGGGAGGTTACAACGCAGTGTAACATGCCGGAG
AAACAGTCCAAGACTTTATACGAATACTTTGGTGAAGATCCCGGCACCGC
TTCTAGCGCGCGCATACTCTCTACGCTATGGAAGTTCTTACAGCGACTGG
GTCAATCTACTCAGCGGTACGAGCAGTGGCACGGTCCCTTTCTAACACCG
AAGATGCTGGAAGAGGAAGATGAGGGCATGATTGACTATACCATATCGAC
CGGCTCCAGCGGCGGCAGCAGCAGCAGAAGCAGTATCGGTAGTATCAAGA
AACGGAGACGGCGGTCCTCGTTGCCGCCGCAAATGGTGGGGCAGCGGTTG
GCATCCATGTATGGTCTTGGCGTCGTCGAGGCCGTGCGGGTAAAAGATAA
GATAAGTATTTTGCGCTTCGCGACTTGGAGAGCCACAGGTTACCTCAATA
TAAGTGTGTTAATTGGAATGGGCAAGTCTGTACAAAGGGCTATAGGATGG
TGAAAGACGTGCAGCGGCAGGTTGGCACGTACCATGTACGGCTGCCCTGG
GGAGCAAGGCCGTACACCCCTTACTCGGGTATCAAAGTCGCAGTCAGATC
TAGTATGTACACTATGCACATATTACCACATGTTGTAGAGAACCATGATG
ATAATGATTAAAGAAAAGCGAGAAAC

protein sequence of jgi.p|Nanoce1779_2|589850

>mRNA_5652-protein ID=mRNA_5652-protein|Name=jgi.p|Nanoce1779_2|589850|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MPDDVTPYPPTPPISLHEVELFMLATMKVPRMGPKVRCFHFKQAFQESLQ
TLRAKMEALAGILGDVVKSNRLVRVLEVLLYPGNTLKAYSGSSSKRVVVK
VFTIDSLFRVALMKSTTSGDMT*

mRNA from alignment at scaffold_11:225446..227621+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5652 ID=mRNA_5652|Name=jgi.p|Nanoce1779_2|589850|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp|location=Sequence derived from alignment at scaffold_11:225446..227621+ (Nannochloropsis oceanica)
GGAGCAAAAAAAGCTGATCCAAGCAGCTGGTTACACACACGATCTTATCA
AGCATGCACCTGTTACGATGCCCGACGATGTGACGCCATATCCTCCCACA
CCTCCTATATCCTTGCACGAGGTAGAGCTGTTCATGCTGGCCACCATGAA
GGTACCAAGGATGGGACCCAAGGTGCGGTGCTTCCACTTTAAGCAGGCAT
TTCAGGAGTCTTTGCAGACATTACGTGCCAAAATGGAAGCTTTGGCAGGC
ATTTTGGGGGACGTGGTGAAGTCAAACCGATTGGTACGCGTACTGGAAGT
CTTACTTTACCCTGGTAATACTCTTAAGGCATATTCTGGCTCGAGCAGTA
AGAGGGTGGTGGTCAAGGTATTTACCATCGACTCACTCTTTCGCGTCGCT
CTGATGAAGTCCACAACTTCTGGAGACATGACTTAACTCGATTACCTCGT
CCGGCTCGCTGCGGAAAAAGGGGAAGGGGCCATCTTGATTGTAGTCGAAG
ATATACCGACTCTGTGTATGGCTGCTGTCTTGCCCGACAGCTCCGCGATT
TTGCGGGATGTGGGCACGTGGCTTCATGACTTTGACGCTCTTAAGCATGA
GATTGCCCGAGAAGAGCAGGACTTGGCGACATATGTACAAGTGCGCATGG
ACCAGCAGCAAGCACATCAACAAGCCAAGGAAGTGCGTCGTGCCGCGACC
AAGGCGGTGGAAGAGGCCGAGCTTCAACATAAAATCCAAGCGACGCGGCG
AGGGGCCGAACGGCATCAGGAACTCCGTCCGCTGACGGAGCGGCTGGCTA
TGGAGAAAGAAGACACCACCGCGCAAATGGGGGAGCATTTCCTACGCTAT
TTGGAGGAGGCTGAAGAGGGCTTTAATGGTGGCAAGGGAGATGGTGTATT
GTGGGAGGACGTGCTCGCGGTACTGCGTGCGTCCGGGCCCTCAATGCCGT
TGGATCTCAAGTTGGGTCTTCTGCTGCGACAGAAGTCGCTTCAGATGGGT
GATGGAATGATGAAAGGAGAGGATGTAACTGGTGAGGCGTTTTGTGGTCG
AAACCCGGTCGAAGACGAGGTGGAGAGGATTAAGCGTTTGAACGAGGAGC
TGGGCTCTTCACAAGGAGACGACGTGGCAGAGCAACGGTTGCTGCAGGTG
GCAAGTCGTTGGCTGGGTCCCGGGATCAAGGCCAACAAATGCTTGGCCTC
CTTGCAGGTGATGAAAATGGATTCAAATGCAGCGGCAAGTTTCACATCCG
CAACAGTTGCATCAGCTGTTGCGCGCTCAGTCATTCCACTCGACGACCGC
TCGGAATTGTTGGCTGCATTACGGGGACGAGGATGCGGAAGTAGCCGGGG
ATGTGGACTCGGTCGTGGGGGGTAGCGGGCAGAAGCGGACTCTCGGGGCT
GCGTTGACAACGGCATGCCACAACGCTGTCGGCGATTAGCATGTACTCTA
CGAAGTGGAGCGGGGGACATTTTAACAGAATCTGAAAGTTTTTGTCTCTT
CTACTGAAGCGCAGATTCGGGAGGTTACAACGCAGTGTAACATGCCGGAG
AAACAGTCCAAGACTTTATACGAATACTTTGGTGAAGATCCCGGCACCGC
TTCTAGCGCGCGCATACTCTCTACGCTATGGAAGTTCTTACAGCGACTGG
GTCAATCTACTCAGCGGTACGAGCAGTGGCACGGTCCCTTTCTAACACCG
AAGATGCTGGAAGAGGAAGATGAGGGCATGATTGACTATACCATATCGAC
CGGCTCCAGCGGCGGCAGCAGCAGCAGAAGCAGTATCGGTAGTATCAAGA
AACGGAGACGGCGGTCCTCGTTGCCGCCGCAAATGGTGGGGCAGCGGTTG
GCATCCATGTATGGTCTTGGCGTCGTCGAGGCCGTGCGGGTAAAAGATAA
GATAAGTATTTTGCGCTTCGCGACTTGGAGAGCCACAGGTTACCTCAATA
TAAGTGTGTTAATTGGAATGGGCAAGTCTGTACAAAGGGCTATAGGATGG
TGAAAGACGTGCAGCGGCAGGTTGGCACGTACCATGTACGGCTGCCCTGG
GGAGCAAGGCCGTACACCCCTTACTCGGGTATCAAAGTCGCAGTCAGATC
TAGTATGTACACTATGCACATATTACCACATGTTGTAGAGAACCATGATG
ATAATGATTAAAGAAAAGCGAGAAAC

Coding sequence (CDS) from alignment at scaffold_11:225446..227621+

>mRNA_5652 ID=mRNA_5652|Name=jgi.p|Nanoce1779_2|589850|organism=Nannochloropsis oceanica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_11:225446..227621+ (Nannochloropsis oceanica)
ATGCCCGACGATGTGACGCCATATCCTCCCACACCTCCTATATCCTTGCA
CGAGGTAGAGCTGTTCATGCTGGCCACCATGAAGGTACCAAGGATGGGAC
CCAAGGTGCGGTGCTTCCACTTTAAGCAGGCATTTCAGGAGTCTTTGCAG
ACATTACGTGCCAAAATGGAAGCTTTGGCAGGCATTTTGGGGGACGTGGT
GAAGTCAAACCGATTGGTACGCGTACTGGAAGTCTTACTTTACCCTGGTA
ATACTCTTAAGGCATATTCTGGCTCGAGCAGTAAGAGGGTGGTGGTCAAG
GTATTTACCATCGACTCACTCTTTCGCGTCGCTCTGATGAAGTCCACAAC
TTCTGGAGACATGACTTAA

Synonyms

Publications