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Properties
| Property Name | Value |
|---|
| TranscriptId | 589935 |
| Track | FilteredModels2 |
| ProteinId | 589849 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:223566..225402 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5651 ID=mRNA_5651|Name=jgi.p|Nanoce1779_2|589849|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp
GGTCAAGGGTGGTCGCCTCGGACAATCCCATTGAGTGATTTTGCGCCCCT
GAAAAGTGCAGCAGTAGCAGCAGCAGTAGCGACAGCAGCGATGGCTGCAG
TCATGAGGGGCGATTGGTAATAACATGGAATAATACCTATAGTTTTCGAC
CGTCCAAAAACGTATCGCTGTGGCTTGCCATGGTGCGCGCAGCAGCTTTC
GAGGCGGCGCTTGTTTCGGTCAACCACATAATGATTTCGGTCATTTGGCA
GAGACTTGGTGAAACTTATGCAGTCGCAATGCAATCCCAATTACCTTCGA
AGATGCAGGAGCACTCCATGGTTGTCTCTCATCGTCGAACCGTCCTGTCT
GCATTGCCCAATATATCACGGGAGAGCAGCTACGAGGAGACACCATCCAC
ACCCTCAAATGGTATGAACAATACCCCAAATGGTAGAGACAAGCAAAGCT
GGTGTAACGATGCGAGGAACTCCTTATTAGTCAATACATCAGAGACGGTC
CTCATGAGCAGATGTTTCACCGGTTTTGAGGGGTCTAACCACACCGGCAT
CCCCGATAGGGTGCTTGCTGCGTGATACCGTCGTCGGCTTTTACGCCGCC
TACGCAGCGCATGCCACGAACGCCAGACTCACTATGGTCCTATACTTCCA
GTCCCAGGTCCTGGTAATTATCTTCCTCTCCATCTACACCTTCATCTGTC
CCGTCGTCCTCGCCAACCGTGCACTCAATGGCCTGTGGTATGTGTGCAGA
ACATTTCAACTTCTTCAGGCGGTCCCATCGCTGCCGACGCTGCAAAGATA
TTTTTCGCTTCATTTGCAGCCGTCTCTACGCAGTGTTGGGTGTGAGAGGG
ACAAGCAGCTACATTGCAACACCACAGCGGGTGTGCGATCGGTGTTTCAT
TAACCTTAAGGACCAAGACCACTTTGGAAAGTCGGCAAAGAATCATTCTT
TCTCCCTGTCATCGTCACCATCATGTTCACGCTCCCGCATTTCGTCGTTT
GATTTGAAGGACACTGAAAGCGACAGTAAGCCTTCAACTGTAATTTCGAA
GACCCTCCCGCGACTCCTCCTTGCAGTTTGGGGTCATCAATCCTGTCGGA
TCCTGTGCTCGCTGCCGCATCTTACGAAACACTCAAACTCAAGCCTGAGA
TGCAGATTTACTTTCAGATGCTAGCTGTGAGTGTTCCTGTCAAGGCTGTG
ACACACAAGATGGCTGCCGATAAGACCATTAGTGCCGAAGAGGTCCAGAT
CTTTTCGGCTGGCAAGGCCGGGATGAAGGCATCTGTGTTGTCGGCGGAGT
TAAAAATCGCAGCATCTAACCCCAGGCACCAGCCGTCACTTATACACTCG
CAGTCAACATTATCCTCGGGCAGGCCCCCGCTTCGTCGCTCCTCCTCGTC
TTCACTGGCTGGTCTTCACCTACCTTCACCAGGTAGCCCTGTTTTTTTTG
CTACTGCCTCAATCAAATTGCGCGCCGTTCATTTCGAGCGACTGACGCCA
GAGCGCGCTGAGGAGTAGATGTTTATGCGCAAGTCTAGCGTGACTCAAAG
TACCGAGATAGCAGGGGGCGGGTCTTCGATATCAAGCGTCCTATCGTCAC
CGTCTCAGGGACAACATGTCAAGGAACTCGCAGGACTCTTCTCCGTTACG
CAGAGCCTCAAGCTCCCTTTGGCGGGTACCGACGTGGGCACAAGAAGTCG
GCCAGCTTTCGGGGCTATATTGAGGCTGCGCAGACTCCAAAACGTGGGAA
TCGTATATAATTAGTTTAAGAAGTCCTTTCCCTCCTCTAAAGCACGTGTT
GTGAGTGTTCTGAGTTTTGAGTGCCATTTTCTCTCGG back to topprotein sequence of jgi.p|Nanoce1779_2|589849 >mRNA_5651-protein ID=mRNA_5651-protein|Name=jgi.p|Nanoce1779_2|589849|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MACGMCAEHFNFFRRSHRCRRCKDIFRFICSRLYAVLGVRGTSSYIATPQ
RVCDRCFINLKDQDHFGKSAKNHSFSLSSSPSCSRSRISSFDLKDTESDS
KPSTVISKTLPRLLLAVWGHQSCRILCSLPHLTKHSNSSLRCRFTFRC* back to topmRNA from alignment at scaffold_11:223566..225402+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5651 ID=mRNA_5651|Name=jgi.p|Nanoce1779_2|589849|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp|location=Sequence derived from alignment at scaffold_11:223566..225402+ (Nannochloropsis oceanica)
GGTCAAGGGTGGTCGCCTCGGACAATCCCATTGAGTGATTTTGCGCCCCT
GAAAAGTGCAGCAGTAGCAGCAGCAGTAGCGACAGCAGCGATGGCTGCAG
TCATGAGGGGCGATTGGTAATAACATGGAATAATACCTATAGTTTTCGAC
CGTCCAAAAACGTATCGCTGTGGCTTGCCATGGTGCGCGCAGCAGCTTTC
GAGGCGGCGCTTGTTTCGGTCAACCACATAATGATTTCGGTCATTTGGCA
GAGACTTGGTGAAACTTATGCAGTCGCAATGCAATCCCAATTACCTTCGA
AGATGCAGGAGCACTCCATGGTTGTCTCTCATCGTCGAACCGTCCTGTCT
GCATTGCCCAATATATCACGGGAGAGCAGCTACGAGGAGACACCATCCAC
ACCCTCAAATGGTATGAACAATACCCCAAATGGTAGAGACAAGCAAAGCT
GGTGTAACGATGCGAGGAACTCCTTATTAGTCAATACATCAGAGACGGTC
CTCATGAGCAGATGTTTCACCGGTTTTGAGGGGTCTAACCACACCGGCAT
CCCCGATAGGGTGCTTGCTGCGTGATACCGTCGTCGGCTTTTACGCCGCC
TACGCAGCGCATGCCACGAACGCCAGACTCACTATGGTCCTATACTTCCA
GTCCCAGGTCCTGGTAATTATCTTCCTCTCCATCTACACCTTCATCTGTC
CCGTCGTCCTCGCCAACCGTGCACTCAATGGCCTGTGGTATGTGTGCAGA
ACATTTCAACTTCTTCAGGCGGTCCCATCGCTGCCGACGCTGCAAAGATA
TTTTTCGCTTCATTTGCAGCCGTCTCTACGCAGTGTTGGGTGTGAGAGGG
ACAAGCAGCTACATTGCAACACCACAGCGGGTGTGCGATCGGTGTTTCAT
TAACCTTAAGGACCAAGACCACTTTGGAAAGTCGGCAAAGAATCATTCTT
TCTCCCTGTCATCGTCACCATCATGTTCACGCTCCCGCATTTCGTCGTTT
GATTTGAAGGACACTGAAAGCGACAGTAAGCCTTCAACTGTAATTTCGAA
GACCCTCCCGCGACTCCTCCTTGCAGTTTGGGGTCATCAATCCTGTCGGA
TCCTGTGCTCGCTGCCGCATCTTACGAAACACTCAAACTCAAGCCTGAGA
TGCAGATTTACTTTCAGATGCTAGCTGTGAGTGTTCCTGTCAAGGCTGTG
ACACACAAGATGGCTGCCGATAAGACCATTAGTGCCGAAGAGGTCCAGAT
CTTTTCGGCTGGCAAGGCCGGGATGAAGGCATCTGTGTTGTCGGCGGAGT
TAAAAATCGCAGCATCTAACCCCAGGCACCAGCCGTCACTTATACACTCG
CAGTCAACATTATCCTCGGGCAGGCCCCCGCTTCGTCGCTCCTCCTCGTC
TTCACTGGCTGGTCTTCACCTACCTTCACCAGGTAGCCCTGTTTTTTTTG
CTACTGCCTCAATCAAATTGCGCGCCGTTCATTTCGAGCGACTGACGCCA
GAGCGCGCTGAGGAGTAGATGTTTATGCGCAAGTCTAGCGTGACTCAAAG
TACCGAGATAGCAGGGGGCGGGTCTTCGATATCAAGCGTCCTATCGTCAC
CGTCTCAGGGACAACATGTCAAGGAACTCGCAGGACTCTTCTCCGTTACG
CAGAGCCTCAAGCTCCCTTTGGCGGGTACCGACGTGGGCACAAGAAGTCG
GCCAGCTTTCGGGGCTATATTGAGGCTGCGCAGACTCCAAAACGTGGGAA
TCGTATATAATTAGTTTAAGAAGTCCTTTCCCTCCTCTAAAGCACGTGTT
GTGAGTGTTCTGAGTTTTGAGTGCCATTTTCTCTCGG back to topCoding sequence (CDS) from alignment at scaffold_11:223566..225402+ >mRNA_5651 ID=mRNA_5651|Name=jgi.p|Nanoce1779_2|589849|organism=Nannochloropsis oceanica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_11:223566..225402+ (Nannochloropsis oceanica)
ATGGCCTGTGGTATGTGTGCAGAACATTTCAACTTCTTCAGGCGGTCCCA
TCGCTGCCGACGCTGCAAAGATATTTTTCGCTTCATTTGCAGCCGTCTCT
ACGCAGTGTTGGGTGTGAGAGGGACAAGCAGCTACATTGCAACACCACAG
CGGGTGTGCGATCGGTGTTTCATTAACCTTAAGGACCAAGACCACTTTGG
AAAGTCGGCAAAGAATCATTCTTTCTCCCTGTCATCGTCACCATCATGTT
CACGCTCCCGCATTTCGTCGTTTGATTTGAAGGACACTGAAAGCGACAGT
AAGCCTTCAACTGTAATTTCGAAGACCCTCCCGCGACTCCTCCTTGCAGT
TTGGGGTCATCAATCCTGTCGGATCCTGTGCTCGCTGCCGCATCTTACGA
AACACTCAAACTCAAGCCTGAGATGCAGATTTACTTTCAGATGCTAG back to top
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