jgi.p|Nanoce1779_2|658187, mRNA_565 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|658187
Unique NamemRNA_565
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length456
Alignment locationscaffold_3:1371081..1371536 -

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Properties
Property NameValue
TranscriptId658273
TrackFilteredModels2
ProteinId658187
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1371081..1371536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658187gene_565Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_565CDS_565Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|658187mRNA_565-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_565 ID=mRNA_565|Name=jgi.p|Nanoce1779_2|658187|organism=Nannochloropsis oceanica|type=mRNA|length=456bp
ATGAGGGAGGGACGGAGGCCGGGGAGGAGACCCACGAGGGAAGTAGATTC
GCCAGGTCGGATATCGGAGGCATTGAGAGAGAAGGAGAGGAAGGGGGGGA
GGGCATTGTTGTTGTTGGTGGAGGCGGCGGCAGCGGCGGCGGCGGAGGAG
GAGGAGGTGGAGGCTGAGAAGGAGAAGGAGGACATAGGAGGTGTTGTGAG
GATGGTGGGGAGAGGCGTTGAGGTGGAGGAGGAGGTGATAGAGGAGGAGG
AGGAGGAGGAGGAGGAAAAAAAGGAGGAGGGAAAGACGAAGGATGGCGGC
TGCGAGGAATCAGGTGTGCTCCAGGCGCTTTTTTTGGTGCAGTCGCTGTT
GGCCGAGACTGACGAAGAGTTGGATGAAGGGAAGGAGGCAGTGGTACAGG
GGGAGGGGATCGAAATGGTGGGATGTGCCTTGACCTCCTTGAATAAGGGT
CGGTGA
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protein sequence of jgi.p|Nanoce1779_2|658187

>mRNA_565-protein ID=mRNA_565-protein|Name=jgi.p|Nanoce1779_2|658187|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MREGRRPGRRPTREVDSPGRISEALREKERKGGRALLLLVEAAAAAAAEE
EEVEAEKEKEDIGGVVRMVGRGVEVEEEVIEEEEEEEEEKKEEGKTKDGG
CEESGVLQALFLVQSLLAETDEELDEGKEAVVQGEGIEMVGCALTSLNKG
R*
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mRNA from alignment at scaffold_3:1371081..1371536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_565 ID=mRNA_565|Name=jgi.p|Nanoce1779_2|658187|organism=Nannochloropsis oceanica|type=mRNA|length=456bp|location=Sequence derived from alignment at scaffold_3:1371081..1371536- (Nannochloropsis oceanica)
ATGAGGGAGGGACGGAGGCCGGGGAGGAGACCCACGAGGGAAGTAGATTC
GCCAGGTCGGATATCGGAGGCATTGAGAGAGAAGGAGAGGAAGGGGGGGA
GGGCATTGTTGTTGTTGGTGGAGGCGGCGGCAGCGGCGGCGGCGGAGGAG
GAGGAGGTGGAGGCTGAGAAGGAGAAGGAGGACATAGGAGGTGTTGTGAG
GATGGTGGGGAGAGGCGTTGAGGTGGAGGAGGAGGTGATAGAGGAGGAGG
AGGAGGAGGAGGAGGAAAAAAAGGAGGAGGGAAAGACGAAGGATGGCGGC
TGCGAGGAATCAGGTGTGCTCCAGGCGCTTTTTTTGGTGCAGTCGCTGTT
GGCCGAGACTGACGAAGAGTTGGATGAAGGGAAGGAGGCAGTGGTACAGG
GGGAGGGGATCGAAATGGTGGGATGTGCCTTGACCTCCTTGAATAAGGGT
CGGTGA
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Coding sequence (CDS) from alignment at scaffold_3:1371081..1371536-

>mRNA_565 ID=mRNA_565|Name=jgi.p|Nanoce1779_2|658187|organism=Nannochloropsis oceanica|type=CDS|length=456bp|location=Sequence derived from alignment at scaffold_3:1371081..1371536- (Nannochloropsis oceanica)
ATGAGGGAGGGACGGAGGCCGGGGAGGAGACCCACGAGGGAAGTAGATTC
GCCAGGTCGGATATCGGAGGCATTGAGAGAGAAGGAGAGGAAGGGGGGGA
GGGCATTGTTGTTGTTGGTGGAGGCGGCGGCAGCGGCGGCGGCGGAGGAG
GAGGAGGTGGAGGCTGAGAAGGAGAAGGAGGACATAGGAGGTGTTGTGAG
GATGGTGGGGAGAGGCGTTGAGGTGGAGGAGGAGGTGATAGAGGAGGAGG
AGGAGGAGGAGGAGGAAAAAAAGGAGGAGGGAAAGACGAAGGATGGCGGC
TGCGAGGAATCAGGTGTGCTCCAGGCGCTTTTTTTGGTGCAGTCGCTGTT
GGCCGAGACTGACGAAGAGTTGGATGAAGGGAAGGAGGCAGTGGTACAGG
GGGAGGGGATCGAAATGGTGGGATGTGCCTTGACCTCCTTGAATAAGGGT
CGGTGA
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Synonyms
Publications