jgi.p|Nanoce1779_2|589845, mRNA_5649 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589845
Unique NamemRNA_5649
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1196
Alignment locationscaffold_11:220398..221911 -

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Properties
Property NameValue
TranscriptId589931
TrackFilteredModels2
ProteinId589845
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:220398..221911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589845gene_5649Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589845mRNA_5649-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5649CDS_5649Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5649 ID=mRNA_5649|Name=jgi.p|Nanoce1779_2|589845|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp
ACAGGCCCACCGTACCAACAGCCGTGATCATGACAATATCGTCAAGAAGG
AGACCGAGGAGCGACCCCAAGGTCTCTGCTTGTCTGATCAAACCCAGCAC
GACCGTGGCTGTCCTGACGCTGCTGTGCTTCTTGTCGAAAAGCCAGGCCT
ACTTCTCCCCCCGCTCCTTTTCCTCCTCCTTCCCCATTGCATTTGGCATC
CGCCGCAACCAGCAGCAGCACCACGAGCACAATCCCCACTCGCTCTCCGA
CGGCCCCCCTCCATCACATTTCTCCTCCTTACCCTACCCATCTTCACTCA
TAACCTCCTCCCAAGCCCGCATCCAAGCCTGGCGCTCTTTCCGTCGCCTC
CCATCCTCCCTCTTTTCCACCCCCACACCCTCTCCTCCCAATCCCCCCTC
CGACCGCGACAAAGAAGCCCTTCGTCGGCAACGTATTTTGGCTATGCAAA
AAGAAATCAGCGAGGAAATTCTTATCGTTAGTGAGGAGGAGCGTGAAGCA
GCCGAGGCGGCCAAGAGAAAACTCCGTCAATCCGCGCGCTCGGCCATCTA
TCAAGCCTACAACAAAGTAGGCGGAGAAATCGCCATTAACGAGATTGGCA
TCCCCAAGAAGATGTCGCGCATGTCCAAAAGCAAATTTATCGACGAGGAA
ACGCGTAAGAAAGACGAGATATCAAGGGGGAAGAGCTATGCGGCGAGGAA
ATTTCAACTTCTATTTGACAGCCTGTGGTTGTCCGCACTTGGGCTGGCTT
TGTGCTGGACGGCTTTCTCATTTGAAGCGAGCGTGTCGTATGGATTAGGG
GCGTTGCTAGGATTCGGTTACATCACCTTGTTAGGACGGACAGTGGAAGC
AATTGGAACAGTAGGCGTCCCCGGGGCAGGGGTGGGACAAGCACGATTTG
CTATGGTGATTTTGTTGGTGCTGCTGGCGGGGAAATACAGGGATACGATT
CAAGTGATTCCGGCGATTATTGGGTTTTCGACGTATCAGGTCGCCTCATT
TTTGCAAGCCTTTGACAGGGAAGAGGTGAAGGAGAAGACGGTAGTTGGGG
AGGTTAGAGAGACGATGGCGCCTCCACAGTAAAGTGTGGGTGAAAAGGAA
AGGAGCATGAATCGAGACAAAAGCAAGTCAGATGAAGACCTTTGGTTGCT
ATTTCTTGTTTTTTTTTTAAATAATGGTGTTGTCCTCAGCGTTCTT
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protein sequence of jgi.p|Nanoce1779_2|589845

>mRNA_5649-protein ID=mRNA_5649-protein|Name=jgi.p|Nanoce1779_2|589845|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MTISSRRRPRSDPKVSACLIKPSTTVAVLTLLCFLSKSQAYFSPRSFSSS
FPIAFGIRRNQQQHHEHNPHSLSDGPPPSHFSSLPYPSSLITSSQARIQA
WRSFRRLPSSLFSTPTPSPPNPPSDRDKEALRRQRILAMQKEISEEILIV
SEEEREAAEAAKRKLRQSARSAIYQAYNKVGGEIAINEIGIPKKMSRMSK
SKFIDEETRKKDEISRGKSYAARKFQLLFDSLWLSALGLALCWTAFSFEA
SVSYGLGALLGFGYITLLGRTVEAIGTVGVPGAGVGQARFAMVILLVLLA
GKYRDTIQVIPAIIGFSTYQVASFLQAFDREEVKEKTVVGEVRETMAPPQ
*
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mRNA from alignment at scaffold_11:220398..221911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5649 ID=mRNA_5649|Name=jgi.p|Nanoce1779_2|589845|organism=Nannochloropsis oceanica|type=mRNA|length=1514bp|location=Sequence derived from alignment at scaffold_11:220398..221911- (Nannochloropsis oceanica)
ACAGGCCCACCGTACCAACAGCCGTGATCATGACAATATCGTCAAGAAGG
AGACCGAGGAGCGACCCCAAGGTCTCTGCTTGTCTGATCAAACCCAGCAC
GACCGTGGCTGTCCTGACGCTGCTGTGCTTCTTGTCGAAAAGCCAGGTAC
GTCTCGTGGATGGAATGCCGGAACTCTGATCAAATCGACAGAGGCAGTAA
GGCATGGTGACGATTAAATGTGATATTCTTTTGCTTCTGCGCCATATTGA
AGCGTACCTGCGTCAGAATTCGCTAATCCTATTTCACAGCGCCCCGCAAC
GGCCTGAATTACATGACTCTAATTACAAGCCTCCATGTCTTCGTTCTTAC
AGATGAGGACGCTAGCGCTCAAGAAAGCTAATGCGCATCGTCTTCTCGGT
CGTCTTTGTACACTTATATTCAACTCCACTTCATCTTCCCTCATTCCTTC
TCAATAAATCAAAGGCCTACTTCTCCCCCCGCTCCTTTTCCTCCTCCTTC
CCCATTGCATTTGGCATCCGCCGCAACCAGCAGCAGCACCACGAGCACAA
TCCCCACTCGCTCTCCGACGGCCCCCCTCCATCACATTTCTCCTCCTTAC
CCTACCCATCTTCACTCATAACCTCCTCCCAAGCCCGCATCCAAGCCTGG
CGCTCTTTCCGTCGCCTCCCATCCTCCCTCTTTTCCACCCCCACACCCTC
TCCTCCCAATCCCCCCTCCGACCGCGACAAAGAAGCCCTTCGTCGGCAAC
GTATTTTGGCTATGCAAAAAGAAATCAGCGAGGAAATTCTTATCGTTAGT
GAGGAGGAGCGTGAAGCAGCCGAGGCGGCCAAGAGAAAACTCCGTCAATC
CGCGCGCTCGGCCATCTATCAAGCCTACAACAAAGTAGGCGGAGAAATCG
CCATTAACGAGATTGGCATCCCCAAGAAGATGTCGCGCATGTCCAAAAGC
AAATTTATCGACGAGGAAACGCGTAAGAAAGACGAGATATCAAGGGGGAA
GAGCTATGCGGCGAGGAAATTTCAACTTCTATTTGACAGCCTGTGGTTGT
CCGCACTTGGGCTGGCTTTGTGCTGGACGGCTTTCTCATTTGAAGCGAGC
GTGTCGTATGGATTAGGGGCGTTGCTAGGATTCGGTTACATCACCTTGTT
AGGACGGACAGTGGAAGCAATTGGAACAGTAGGCGTCCCCGGGGCAGGGG
TGGGACAAGCACGATTTGCTATGGTGATTTTGTTGGTGCTGCTGGCGGGG
AAATACAGGGATACGATTCAAGTGATTCCGGCGATTATTGGGTTTTCGAC
GTATCAGGTCGCCTCATTTTTGCAAGCCTTTGACAGGGAAGAGGTGAAGG
AGAAGACGGTAGTTGGGGAGGTTAGAGAGACGATGGCGCCTCCACAGTAA
AGTGTGGGTGAAAAGGAAAGGAGCATGAATCGAGACAAAAGCAAGTCAGA
TGAAGACCTTTGGTTGCTATTTCTTGTTTTTTTTTTAAATAATGGTGTTG
TCCTCAGCGTTCTT
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Coding sequence (CDS) from alignment at scaffold_11:220398..221911-

>mRNA_5649 ID=mRNA_5649|Name=jgi.p|Nanoce1779_2|589845|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_11:220398..221911- (Nannochloropsis oceanica)
GCCTACTTCTCCCCCCGCTCCTTTTCCTCCTCCTTCCCCATTGCATTTGG
CATCCGCCGCAACCAGCAGCAGCACCACGAGCACAATCCCCACTCGCTCT
CCGACGGCCCCCCTCCATCACATTTCTCCTCCTTACCCTACCCATCTTCA
CTCATAACCTCCTCCCAAGCCCGCATCCAAGCCTGGCGCTCTTTCCGTCG
CCTCCCATCCTCCCTCTTTTCCACCCCCACACCCTCTCCTCCCAATCCCC
CCTCCGACCGCGACAAAGAAGCCCTTCGTCGGCAACGTATTTTGGCTATG
CAAAAAGAAATCAGCGAGGAAATTCTTATCGTTAGTGAGGAGGAGCGTGA
AGCAGCCGAGGCGGCCAAGAGAAAACTCCGTCAATCCGCGCGCTCGGCCA
TCTATCAAGCCTACAACAAAGTAGGCGGAGAAATCGCCATTAACGAGATT
GGCATCCCCAAGAAGATGTCGCGCATGTCCAAAAGCAAATTTATCGACGA
GGAAACGCGTAAGAAAGACGAGATATCAAGGGGGAAGAGCTATGCGGCGA
GGAAATTTCAACTTCTATTTGACAGCCTGTGGTTGTCCGCACTTGGGCTG
GCTTTGTGCTGGACGGCTTTCTCATTTGAAGCGAGCGTGTCGTATGGATT
AGGGGCGTTGCTAGGATTCGGTTACATCACCTTGTTAGGACGGACAGTGG
AAGCAATTGGAACAGTAGGCGTCCCCGGGGCAGGGGTGGGACAAGCACGA
TTTGCTATGGTGATTTTGTTGGTGCTGCTGGCGGGGAAATACAGGGATAC
GATTCAAGTGATTCCGGCGATTATTGGGTTTTCGACGTATCAGGTCGCCT
CATTTTTGCAAGCCTTTGACAGGGAAGAGGTGAAGGAGAAGACGGTAGTT
GGGGAGGTTAGAGAGACGATGGCGCCTCCACAGTAAATGACAATATCGTC
AAGAAGGAGACCGAGGAGCGACCCCAAGGTCTCTGCTTGTCTGATCAAAC
CCAGCACGACCGTGGCTGTCCTGACGCTGCTGTGCTTCTTGTCGAAAAGC
CAGGCCTACTTCTCCCCCCGCTCCTTTTCCTCCTCCTTCCCCATTGCATT
TGGCATCCGCCGCAACCAGCAGCAGCACCACGAGCACAATCCCCACTCGC
TCTCCGACGGCCCCCCTCCATCACATTTCTCCTCCTTACCCTACCCATCT
TCACTCATAACCTCCTCCCAAGCCCGCATCCAAGCCTGGCGCTCTTTCCG
TCGCCTCCCATCCTCCCTCTTTTCCACCCCCACACCCTCTCCTCCCAATC
CCCCCTCCGACCGCGACAAAGAAGCCCTTCGTCGGCAACGTATTTTGGCT
ATGCAAAAAGAAATCAGCGAGGAAATTCTTATCGTTAGTGAGGAGGAGCG
TGAAGCAGCCGAGGCGGCCAAGAGAAAACTCCGTCAATCCGCGCGCTCGG
CCATCTATCAAGCCTACAACAAAGTAGGCGGAGAAATCGCCATTAACGAG
ATTGGCATCCCCAAGAAGATGTCGCGCATGTCCAAAAGCAAATTTATCGA
CGAGGAAACGCGTAAGAAAGACGAGATATCAAGGGGGAAGAGCTATGCGG
CGAGGAAATTTCAACTTCTATTTGACAGCCTGTGGTTGTCCGCACTTGGG
CTGGCTTTGTGCTGGACGGCTTTCTCATTTGAAGCGAGCGTGTCGTATGG
ATTAGGGGCGTTGCTAGGATTCGGTTACATCACCTTGTTAGGACGGACAG
TGGAAGCAATTGGAACAGTAGGCGTCCCCGGGGCAGGGGTGGGACAAGCA
CGATTTGCTATGGTGATTTTGTTGGTGCTGCTGGCGGGGAAATACAGGGA
TACGATTCAAGTGATTCCGGCGATTATTGGGTTTTCGACGTATCAGGTCG
CCTCATTTTTGCAAGCCTTTGACAGGGAAGAGGTGAAGGAGAAGACGGTA
GTTGGGGAGGTTAGAGAGACGATGGCGCCTCCACAGTAAATGACAATATC
GTCAAGAAGGAGACCGAGGAGCGACCCCAAGGTCTCTGCTTGTCTGATCA
AACCCAGCACGACCGTGGCTGTCCTGACGCTGCTGTGCTTCTTGTCGAAA
AGCCAG
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Synonyms
Publications