Properties
| Property Name | Value |
|---|
| TranscriptId | 589908 |
| Track | FilteredModels2 |
| ProteinId | 589822 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:199520..202156 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5643 ID=mRNA_5643|Name=jgi.p|Nanoce1779_2|589822|organism=Nannochloropsis oceanica|type=mRNA|length=2489bp
GCCCTGCCACACAGCAACAGCAGCAACAAGAACAAGAACAACAAGAACAA
GAACAAGAACAAGAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCA
GCGATCCCCCTCCTCCTCCTCCTTCTCCTCCTCCGGTAGTACCATCAGCA
GCCTGGCCAAAACGATGGCACACGCTTCTGTCCATGCCATGTCATCCTCC
ACCTCGTCATTTACCTCCTCTTCCTCATCTACTCCAGTAATAGCGCCCAA
GCCTCCCTATCTCCTCGCCTCTGAAGCACCAGCAACCGCAGCAGCAGCAA
CAGCTGCCGCTACTACCGCTGTCAGCAGCACCCAGCATAAGACACAACCG
CGACACAGCTCCTCAATCTCCGTTTCCGTCCCTCCACCCTCAGTGCTACA
GCAGAATTTTACTGTTGCCCTTGGCTTGTGTTTGTTGGCGTGTGGATTAA
GTCAGGCAGGGCTCGAGTGGTACACCATGAAATTGGGGAGCGATGAAAGC
AGATGCAGCAGCAGCAGCGCCAACAGCAGCAGTGGCACGGTGATGAGGTC
GTTACAAGAATCGGTCACGCTGCTCGTGCATCTGTCTTACGCGTTCTTGG
TCATGGGTGGGGCGGCGGCAGTGGTGGCTGCCTTATTTTTCGACTTGAAA
TTTCTCGATCGGTTGGAACAAACAAACATGTGCGGCGCCAGCACCGAAAA
ACTCGTTATGGATAACGGCCTTGTACTGAGTGAGACGTTGGGAAATGCTT
GCGGGTTCTCGTCGGCGTGTGCGTGTGTGCAATTCACCCATCTATCACCC
ACGGGGAATGTGGCGTGCATGGACTTCGGTCGGTCGAGTGCGGCAGCTTG
TCCGCACGTTGCATTTGCGATGGCGGGGATGGTGCGAGTCAGCGTTTGGT
TGATGGGAGGGCTGTTATTTTTCATCACTGTTTTGATGCTGAGGGCCCGC
GCGTCGGTGATAGCGGCCTGCACGGACCAGGATAGGAGCCGCAGTGTGAG
CAGGAGGAGGAGCAGTGGTAGCATGGTGTGGCGGAGGGAGGAGGAGGAGG
GGCCTGTGGTGTCGTCATTTGGGAGCAACAAGGTACGGGCTTTATCTGTT
GAGAGCCAGAATCGATTGAAAGTGCAGGACATGCAGCAGTGGGAGGCGTC
AAAGGGTCAATTCAAGTCCTGGTGGCAACCCGGGGATGAGGACAGCAGTA
GTGACGACGAGGAGGAGGAGGAGGGAGGGGGGAAGGGAATAGCGGGGCTG
ACAATGGCACTGGAGGGACAGTCGGGGTCTCGTGGTGGTGGGGCGCGAAA
CTTGGTCTTGACGCCGATTCCGGAGTGCAACACCCCCCAGCCGGAGGAAG
AGATGGATGGGAGCAGTCGAGACGGAAGACTTCGGCAGGGGAATAAAGCC
GAGAACCATGGCAGTGATGATTATGACGACGACGACGACGAGCAGGTGGC
GCCTCCCCGTGGTCGGCAAGATGTCGTGTACATTTAATTATACTTCGTTC
TCATGGGTTCAAGAGGAAAAGATGGTAGAATTGACTGCACGGATCTTTTT
GATTTGGGTCCGTCACACTTTCACTGGGAAATACTCGTATTGTTGGGGGT
ACTCTAGTATCTGGTGCTCATGAGGTCTTCCATTTATTTATTTGATGGGT
CCATCGGCAATGAGAAGGATTATTACACGATCAGCATTTCTGAATAATGA
AGATTTAGAGACGTGGGAAGATTTAGAGACATGGAAATTGCTGTTGTGAT
TTTTCGTGTATTTGGTGAGAGAGAGGCAGAGAGAGAATCAAGAATGACGA
GACTGAATGGAAGGAGAGATGACTTGATTTGAAGTCTTGTGAACTCCTAT
TTTCTGCATACTTTCTTGTCGTTCCACCTTTCATTGTCTTTAAATATTCT
CTTTATGTTTGTCTCTCTGATGCCATGCTTTCTCTCATTAATGCACTCAT
AAATAATCGATTCCTTCATAATGATAAAATTGTCTCTAGCAAAGAAGAGT
ATCAATTTTGCAGGCATAATTTCTGCACCCCCTGCCGTGCAAAATCTTTT
GCTGACTCTTTCAAAAACACGTCTTTGTTACCTCACTTTGTTTCTGATGG
AATTCGTCTATCCCCCGCCCCCGCCCCCGTTTTGAATGTCTTTCTTCCAT
TCCCTATTTCTTTCCATTCCTTTTTTTGGGGGGCTTTTCTTGTTTTTTAC
ACACCAATCTCATCTTTTGATTGTCTTCTGTCTCTTCTATCTCTTCAATC
AGGACGCCCGCTACAAACTTTCCACAAATGACGTTCGAAAAGGCACCTCG
CATTTTTCTTTCCCGTTATCTCAACTTTGGAGCTTAGGGCGCTTCACATG
GTAATGTGGATCGTCCTCGTCATCCACCGCCTCCTCCTCCTCCCCGCTCC
TCTTCTCCTCCTCTTCCTCCTCCACCTCCTCCTCTTCCTCTATCTCATTA
GCATTTCTATCCCCTTCATCATCATCATCATCATCTACC back to topprotein sequence of jgi.p|Nanoce1779_2|589822 >mRNA_5643-protein ID=mRNA_5643-protein|Name=jgi.p|Nanoce1779_2|589822|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MAHASVHAMSSSTSSFTSSSSSTPVIAPKPPYLLASEAPATAAAATAAAT
TAVSSTQHKTQPRHSSSISVSVPPPSVLQQNFTVALGLCLLACGLSQAGL
EWYTMKLGSDESRCSSSSANSSSGTVMRSLQESVTLLVHLSYAFLVMGGA
AAVVAALFFDLKFLDRLEQTNMCGASTEKLVMDNGLVLSETLGNACGFSS
ACACVQFTHLSPTGNVACMDFGRSSAAACPHVAFAMAGMVRVSVWLMGGL
LFFITVLMLRARASVIAACTDQDRSRSVSRRRSSGSMVWRREEEEGPVVS
SFGSNKVRALSVESQNRLKVQDMQQWEASKGQFKSWWQPGDEDSSSDDEE
EEEGGGKGIAGLTMALEGQSGSRGGGARNLVLTPIPECNTPQPEEEMDGS
SRDGRLRQGNKAENHGSDDYDDDDDEQVAPPRGRQDVVYI* back to topmRNA from alignment at scaffold_11:199520..202156+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5643 ID=mRNA_5643|Name=jgi.p|Nanoce1779_2|589822|organism=Nannochloropsis oceanica|type=mRNA|length=2637bp|location=Sequence derived from alignment at scaffold_11:199520..202156+ (Nannochloropsis oceanica)
GCCCTGCCACACAGCAACAGCAGCAACAAGAACAAGAACAACAAGAACAA
GAACAAGAACAAGAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCA
GCGATCCCCCTCCTCCTCCTCCTTCTCCTCCTCCGGTAGTACCATCAGCA
GCCTGGCCAAAACGATGGCACACGCTTCTGTCCATGCCATGTCATCCTCC
ACCTCGTCATTTACCTCCTCTTCCTCATCTACTCCAGTAATAGCGCCCAA
GCCTGTTCGTGCCGATGCCCCCGTTGTGCTGCTGCCACTCCCCCCCCCTC
CTTCCTCTTTTTCCCACGTTCAGCCCTATCTCCTCGCCTCTGAAGCACCA
GCAACCGCAGCAGCAGCAACAGCTGCCGCTACTACCGCTGTCAGCAGCAC
CCAGCATAAGACACAACCGCGACACAGCTCCTCAATCTCCGTTTCCGTCC
CTCCACCCTCAGTGCTACAGCAGAATTTTACTGTTGCCCTTGGCTTGTGT
TTGTTGGCGTGTGGATTAAGTCAGGCAGGGCTCGAGTGGTACACCATGAA
ATTGGGGAGCGATGAAAGCAGATGGTGGGCTGGCTTAATCTGTGCTCTCC
TTGGCCTTGCCACGATGGCGGCTAAGAGGGGGGGGGGGGAACAATATCAA
CAGCAGCAGCAGCAGCGCCAACAGCAGCAGTGGCACGGTGATGAGGTCGT
TACAAGAATCGGTCACGCTGCTCGTGCATCTGTCTTACGCGTTCTTGGTC
ATGGGTGGGGCGGCGGCAGTGGTGGCTGCCTTATTTTTCGACTTGAAATT
TCTCGATCGGTTGGAACAAACAAACATGTGCGGCGCCAGCACCGAAAAAC
TCGTTATGGATAACGGCCTTGTACTGAGTGAGACGTTGGGAAATGCTTGC
GGGTTCTCGTCGGCGTGTGCGTGTGTGCAATTCACCCATCTATCACCCAC
GGGGAATGTGGCGTGCATGGACTTCGGTCGGTCGAGTGCGGCAGCTTGTC
CGCACGTTGCATTTGCGATGGCGGGGATGGTGCGAGTCAGCGTTTGGTTG
ATGGGAGGGCTGTTATTTTTCATCACTGTTTTGATGCTGAGGGCCCGCGC
GTCGGTGATAGCGGCCTGCACGGACCAGGATAGGAGCCGCAGTGTGAGCA
GGAGGAGGAGCAGTGGTAGCATGGTGTGGCGGAGGGAGGAGGAGGAGGGG
CCTGTGGTGTCGTCATTTGGGAGCAACAAGGTACGGGCTTTATCTGTTGA
GAGCCAGAATCGATTGAAAGTGCAGGACATGCAGCAGTGGGAGGCGTCAA
AGGGTCAATTCAAGTCCTGGTGGCAACCCGGGGATGAGGACAGCAGTAGT
GACGACGAGGAGGAGGAGGAGGGAGGGGGGAAGGGAATAGCGGGGCTGAC
AATGGCACTGGAGGGACAGTCGGGGTCTCGTGGTGGTGGGGCGCGAAACT
TGGTCTTGACGCCGATTCCGGAGTGCAACACCCCCCAGCCGGAGGAAGAG
ATGGATGGGAGCAGTCGAGACGGAAGACTTCGGCAGGGGAATAAAGCCGA
GAACCATGGCAGTGATGATTATGACGACGACGACGACGAGCAGGTGGCGC
CTCCCCGTGGTCGGCAAGATGTCGTGTACATTTAATTATACTTCGTTCTC
ATGGGTTCAAGAGGAAAAGATGGTAGAATTGACTGCACGGATCTTTTTGA
TTTGGGTCCGTCACACTTTCACTGGGAAATACTCGTATTGTTGGGGGTAC
TCTAGTATCTGGTGCTCATGAGGTCTTCCATTTATTTATTTGATGGGTCC
ATCGGCAATGAGAAGGATTATTACACGATCAGCATTTCTGAATAATGAAG
ATTTAGAGACGTGGGAAGATTTAGAGACATGGAAATTGCTGTTGTGATTT
TTCGTGTATTTGGTGAGAGAGAGGCAGAGAGAGAATCAAGAATGACGAGA
CTGAATGGAAGGAGAGATGACTTGATTTGAAGTCTTGTGAACTCCTATTT
TCTGCATACTTTCTTGTCGTTCCACCTTTCATTGTCTTTAAATATTCTCT
TTATGTTTGTCTCTCTGATGCCATGCTTTCTCTCATTAATGCACTCATAA
ATAATCGATTCCTTCATAATGATAAAATTGTCTCTAGCAAAGAAGAGTAT
CAATTTTGCAGGCATAATTTCTGCACCCCCTGCCGTGCAAAATCTTTTGC
TGACTCTTTCAAAAACACGTCTTTGTTACCTCACTTTGTTTCTGATGGAA
TTCGTCTATCCCCCGCCCCCGCCCCCGTTTTGAATGTCTTTCTTCCATTC
CCTATTTCTTTCCATTCCTTTTTTTGGGGGGCTTTTCTTGTTTTTTACAC
ACCAATCTCATCTTTTGATTGTCTTCTGTCTCTTCTATCTCTTCAATCAG
GACGCCCGCTACAAACTTTCCACAAATGACGTTCGAAAAGGCACCTCGCA
TTTTTCTTTCCCGTTATCTCAACTTTGGAGCTTAGGGCGCTTCACATGGT
AATGTGGATCGTCCTCGTCATCCACCGCCTCCTCCTCCTCCCCGCTCCTC
TTCTCCTCCTCTTCCTCCTCCACCTCCTCCTCTTCCTCTATCTCATTAGC
ATTTCTATCCCCTTCATCATCATCATCATCATCTACC back to topCoding sequence (CDS) from alignment at scaffold_11:199520..202156+ >mRNA_5643 ID=mRNA_5643|Name=jgi.p|Nanoce1779_2|589822|organism=Nannochloropsis oceanica|type=CDS|length=3969bp|location=Sequence derived from alignment at scaffold_11:199520..202156+ (Nannochloropsis oceanica)
ATGGCACACGCTTCTGTCCATGCCATGTCATCCTCCACCTCGTCATTTAC
CTCCTCTTCCTCATCTACTCCAGTAATAGCGCCCAAGCCTCCCTATCTCC
TCGCCTCTGAAGCACCAGCAACCGCAGCAGCAGCAACAGCTGCCGCTACT
ACCGCTGTCAGCAGCACCCAGCATAAGACACAACCGCGACACAGCTCCTC
AATCTCCGTTTCCGTCCCTCCACCCTCAGTGCTACAGCAGAATTTTACTG
TTGCCCTTGGCTTGTGTTTGTTGGCGTGTGGATTAAGTCAGGCAGGGCTC
GAGTGGTACACCATGAAATTGGGGAGCGATGAAAGCAGATGCAGCAGCAG
CAGCGCCAACAGCAGCAGTGGCACGGTGATGAGGTCGTTACAAGAATCGG
TCACGCTGCTCGTGCATCTGTCTTACGCGTTCTTGGTCATGGGTGGGGCG
GCGGCAGTGGTGGCTGCCTTATTTTTCGACTTGAAATTTCTCGATCGGTT
GGAACAAACAAACATGTGCGGCGCCAGCACCGAAAAACTCGTTATGGATA
ACGGCCTTGTACTGAGTGAGACGTTGGGAAATGCTTGCGGGTTCTCGTCG
GCGTGTGCGTGTGTGCAATTCACCCATCTATCACCCACGGGGAATGTGGC
GTGCATGGACTTCGGTCGGTCGAGTGCGGCAGCTTGTCCGCACGTTGCAT
TTGCGATGGCGGGGATGGTGCGAGTCAGCGTTTGGTTGATGGGAGGGCTG
TTATTTTTCATCACTGTTTTGATGCTGAGGGCCCGCGCGTCGGTGATAGC
GGCCTGCACGGACCAGGATAGGAGCCGCAGTGTGAGCAGGAGGAGGAGCA
GTGGTAGCATGGTGTGGCGGAGGGAGGAGGAGGAGGGGCCTGTGGTGTCG
TCATTTGGGAGCAACAAGGTACGGGCTTTATCTGTTGAGAGCCAGAATCG
ATTGAAAGTGCAGGACATGCAGCAGTGGGAGGCGTCAAAGGGTCAATTCA
AGTCCTGGTGGCAACCCGGGGATGAGGACAGCAGTAGTGACGACGAGGAG
GAGGAGGAGGGAGGGGGGAAGGGAATAGCGGGGCTGACAATGGCACTGGA
GGGACAGTCGGGGTCTCGTGGTGGTGGGGCGCGAAACTTGGTCTTGACGC
CGATTCCGGAGTGCAACACCCCCCAGCCGGAGGAAGAGATGGATGGGAGC
AGTCGAGACGGAAGACTTCGGCAGGGGAATAAAGCCGAGAACCATGGCAG
TGATGATTATGACGACGACGACGACGAGCAGGTGGCGCCTCCCCGTGGTC
GGCAAGATGTCGTGTACATTTAAATGGCACACGCTTCTGTCCATGCCATG
TCATCCTCCACCTCGTCATTTACCTCCTCTTCCTCATCTACTCCAGTAAT
AGCGCCCAAGCCTCCCTATCTCCTCGCCTCTGAAGCACCAGCAACCGCAG
CAGCAGCAACAGCTGCCGCTACTACCGCTGTCAGCAGCACCCAGCATAAG
ACACAACCGCGACACAGCTCCTCAATCTCCGTTTCCGTCCCTCCACCCTC
AGTGCTACAGCAGAATTTTACTGTTGCCCTTGGCTTGTGTTTGTTGGCGT
GTGGATTAAGTCAGGCAGGGCTCGAGTGGTACACCATGAAATTGGGGAGC
GATGAAAGCAGATGCAGCAGCAGCAGCGCCAACAGCAGCAGTGGCACGGT
GATGAGGTCGTTACAAGAATCGGTCACGCTGCTCGTGCATCTGTCTTACG
CGTTCTTGGTCATGGGTGGGGCGGCGGCAGTGGTGGCTGCCTTATTTTTC
GACTTGAAATTTCTCGATCGGTTGGAACAAACAAACATGTGCGGCGCCAG
CACCGAAAAACTCGTTATGGATAACGGCCTTGTACTGAGTGAGACGTTGG
GAAATGCTTGCGGGTTCTCGTCGGCGTGTGCGTGTGTGCAATTCACCCAT
CTATCACCCACGGGGAATGTGGCGTGCATGGACTTCGGTCGGTCGAGTGC
GGCAGCTTGTCCGCACGTTGCATTTGCGATGGCGGGGATGGTGCGAGTCA
GCGTTTGGTTGATGGGAGGGCTGTTATTTTTCATCACTGTTTTGATGCTG
AGGGCCCGCGCGTCGGTGATAGCGGCCTGCACGGACCAGGATAGGAGCCG
CAGTGTGAGCAGGAGGAGGAGCAGTGGTAGCATGGTGTGGCGGAGGGAGG
AGGAGGAGGGGCCTGTGGTGTCGTCATTTGGGAGCAACAAGGTACGGGCT
TTATCTGTTGAGAGCCAGAATCGATTGAAAGTGCAGGACATGCAGCAGTG
GGAGGCGTCAAAGGGTCAATTCAAGTCCTGGTGGCAACCCGGGGATGAGG
ACAGCAGTAGTGACGACGAGGAGGAGGAGGAGGGAGGGGGGAAGGGAATA
GCGGGGCTGACAATGGCACTGGAGGGACAGTCGGGGTCTCGTGGTGGTGG
GGCGCGAAACTTGGTCTTGACGCCGATTCCGGAGTGCAACACCCCCCAGC
CGGAGGAAGAGATGGATGGGAGCAGTCGAGACGGAAGACTTCGGCAGGGG
AATAAAGCCGAGAACCATGGCAGTGATGATTATGACGACGACGACGACGA
GCAGGTGGCGCCTCCCCGTGGTCGGCAAGATGTCGTGTACATTTAAATGG
CACACGCTTCTGTCCATGCCATGTCATCCTCCACCTCGTCATTTACCTCC
TCTTCCTCATCTACTCCAGTAATAGCGCCCAAGCCTCCCTATCTCCTCGC
CTCTGAAGCACCAGCAACCGCAGCAGCAGCAACAGCTGCCGCTACTACCG
CTGTCAGCAGCACCCAGCATAAGACACAACCGCGACACAGCTCCTCAATC
TCCGTTTCCGTCCCTCCACCCTCAGTGCTACAGCAGAATTTTACTGTTGC
CCTTGGCTTGTGTTTGTTGGCGTGTGGATTAAGTCAGGCAGGGCTCGAGT
GGTACACCATGAAATTGGGGAGCGATGAAAGCAGATGCAGCAGCAGCAGC
GCCAACAGCAGCAGTGGCACGGTGATGAGGTCGTTACAAGAATCGGTCAC
GCTGCTCGTGCATCTGTCTTACGCGTTCTTGGTCATGGGTGGGGCGGCGG
CAGTGGTGGCTGCCTTATTTTTCGACTTGAAATTTCTCGATCGGTTGGAA
CAAACAAACATGTGCGGCGCCAGCACCGAAAAACTCGTTATGGATAACGG
CCTTGTACTGAGTGAGACGTTGGGAAATGCTTGCGGGTTCTCGTCGGCGT
GTGCGTGTGTGCAATTCACCCATCTATCACCCACGGGGAATGTGGCGTGC
ATGGACTTCGGTCGGTCGAGTGCGGCAGCTTGTCCGCACGTTGCATTTGC
GATGGCGGGGATGGTGCGAGTCAGCGTTTGGTTGATGGGAGGGCTGTTAT
TTTTCATCACTGTTTTGATGCTGAGGGCCCGCGCGTCGGTGATAGCGGCC
TGCACGGACCAGGATAGGAGCCGCAGTGTGAGCAGGAGGAGGAGCAGTGG
TAGCATGGTGTGGCGGAGGGAGGAGGAGGAGGGGCCTGTGGTGTCGTCAT
TTGGGAGCAACAAGGTACGGGCTTTATCTGTTGAGAGCCAGAATCGATTG
AAAGTGCAGGACATGCAGCAGTGGGAGGCGTCAAAGGGTCAATTCAAGTC
CTGGTGGCAACCCGGGGATGAGGACAGCAGTAGTGACGACGAGGAGGAGG
AGGAGGGAGGGGGGAAGGGAATAGCGGGGCTGACAATGGCACTGGAGGGA
CAGTCGGGGTCTCGTGGTGGTGGGGCGCGAAACTTGGTCTTGACGCCGAT
TCCGGAGTGCAACACCCCCCAGCCGGAGGAAGAGATGGATGGGAGCAGTC
GAGACGGAAGACTTCGGCAGGGGAATAAAGCCGAGAACCATGGCAGTGAT
GATTATGACGACGACGACGACGAGCAGGTGGCGCCTCCCCGTGGTCGGCA
AGATGTCGTGTACATTTAA back to top
|