jgi.p|Nanoce1779_2|589817, mRNA_5642 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589817
Unique NamemRNA_5642
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1453
Alignment locationscaffold_11:194934..196386 -

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Properties
Property NameValue
TranscriptId589903
TrackFilteredModels2
ProteinId589817
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:194934..196386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589817gene_5642Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589817mRNA_5642-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5642CDS_5642Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5642 ID=mRNA_5642|Name=jgi.p|Nanoce1779_2|589817|organism=Nannochloropsis oceanica|type=mRNA|length=1453bp
ACAGACCTCCCCCTATTTGTTCAGGCGTACCTTTGCGCTGTCTTACTAAG
ATACTCCAAGCAGCCCATCCCAACCACCGCTATCACCCCCACCTGCCTAC
CATGGTCTTCTTCTCTTGCGAAGGTTGCAATGAGACGCTGAAAAAAAACC
AAGTTGAGAACCATATTCGACGGGCGTCCTGTGGCCACTACCCGGTATCG
TGTGTGGACTGCAGTCAAGTCTTTCACGGCGCGGACTATCAAGCCCACAC
GACCTGCATCTCTGAGGCGGAAAAGTATGAGAAGTCCCTCTACAAAGGCC
CCAGGGCGGGCGGCGGGGGTGGCAAGGGGAAGAAACGTAACCCACAGGAG
GAATGGATGGACATGATTGGTTTGGCTGCGGCCGAGGAAGAGAGTGTGGT
GGGCTTAAGTCCGTCCCTTCAGGGGCAGCTGCCGCGCATGGCCGAGCTAG
GCAATGTGCCTCGAAACGAGAAGAAGTTCAAGAATTTTCTGAGCAACAGC
TTACGGGTACGTATATAGTAGGGTTAGTTTTTCGTAGGATTTGTGTGGGA
GTGGAAGAACGAAATAGTACACGTCAACAAGGGACCTCATGTCTGTTGTG
TCGCTTGGCTCAACCTGAAAAAGAGCGACCTGAGCCTGGTGCCACAATCA
CCACTTTTTCCACATTCCCGCACACAAACACATAATAGATAAATCGAGCG
ACTGAGCAAGAAGAACTGTGGATTTTTTTGAAGGGAAAGATAGACGCAGC
GAAGGTAGCCATGAACGAGGCCGAGGAGAAGAAGAAGAAGGAGAGGAAGG
ATGAGGAGAAGGAGGGGAAGGAAGAGGACGCAGCGACCATCTCAACGAAA
GGATCTGACAAGAAGGAGCGAGAGACCATCACCACTCCTATAGGAACCCT
AGACAACACCAAGAAGTCGAAAAAGGGCAAGAAGAAAAGGAAGGCGGGGG
AGGAGGGGGAGGCAGCGGTGGAGGACGAGCCCGCCACCCCGCGTCAATCC
AAGAAGAAACAGAAGAATGGGGCACCGACGACAGCAGCATTGAAAGGGGG
CAATGACGGTGACAAGCATTCACTAGCAGCAGTAGGAGAAGCAGAAGTCT
CCTTTCCATGGGGGAAGACTATTAAGAGACTCATCAAGAAGGCTGAGGGA
AGAAAAATGGACCGGCAAACATTGCAAAAAGAGGCACTTGCTCTGGCTTC
GAAGACGAGCACCCAAAGTAAGAAAGGACTCAAAAGACAATTTAAAGAGG
CATTGGGTGGAGGCGTGGCAGGTGTGCAGGTGAACGGGGAAGTGGTCATG
CTAGTTAAATAGTAACGCTGGGCAGGGAATAAGCGTGGGATTATTGGTGG
CAGAGAGAAGGCCCAAAAAGACATCAAAACTCAAAAAAATCAAAAACCAA
AAAGCATATGCTCAAGGAAAAGCATGGAGAACACCCGCAGAGAATTGAGA
TAT
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protein sequence of jgi.p|Nanoce1779_2|589817

>mRNA_5642-protein ID=mRNA_5642-protein|Name=jgi.p|Nanoce1779_2|589817|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MVFFSCEGCNETLKKNQVENHIRRASCGHYPVSCVDCSQVFHGADYQAHT
TCISEAEKYEKSLYKGPRAGGGGGKGKKRNPQEEWMDMIGLAAAEEESVV
GLSPSLQGQLPRMAELGNVPRNEKKFKNFLSNSLRVRI*
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mRNA from alignment at scaffold_11:194934..196386-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5642 ID=mRNA_5642|Name=jgi.p|Nanoce1779_2|589817|organism=Nannochloropsis oceanica|type=mRNA|length=1453bp|location=Sequence derived from alignment at scaffold_11:194934..196386- (Nannochloropsis oceanica)
ACAGACCTCCCCCTATTTGTTCAGGCGTACCTTTGCGCTGTCTTACTAAG
ATACTCCAAGCAGCCCATCCCAACCACCGCTATCACCCCCACCTGCCTAC
CATGGTCTTCTTCTCTTGCGAAGGTTGCAATGAGACGCTGAAAAAAAACC
AAGTTGAGAACCATATTCGACGGGCGTCCTGTGGCCACTACCCGGTATCG
TGTGTGGACTGCAGTCAAGTCTTTCACGGCGCGGACTATCAAGCCCACAC
GACCTGCATCTCTGAGGCGGAAAAGTATGAGAAGTCCCTCTACAAAGGCC
CCAGGGCGGGCGGCGGGGGTGGCAAGGGGAAGAAACGTAACCCACAGGAG
GAATGGATGGACATGATTGGTTTGGCTGCGGCCGAGGAAGAGAGTGTGGT
GGGCTTAAGTCCGTCCCTTCAGGGGCAGCTGCCGCGCATGGCCGAGCTAG
GCAATGTGCCTCGAAACGAGAAGAAGTTCAAGAATTTTCTGAGCAACAGC
TTACGGGTACGTATATAGTAGGGTTAGTTTTTCGTAGGATTTGTGTGGGA
GTGGAAGAACGAAATAGTACACGTCAACAAGGGACCTCATGTCTGTTGTG
TCGCTTGGCTCAACCTGAAAAAGAGCGACCTGAGCCTGGTGCCACAATCA
CCACTTTTTCCACATTCCCGCACACAAACACATAATAGATAAATCGAGCG
ACTGAGCAAGAAGAACTGTGGATTTTTTTGAAGGGAAAGATAGACGCAGC
GAAGGTAGCCATGAACGAGGCCGAGGAGAAGAAGAAGAAGGAGAGGAAGG
ATGAGGAGAAGGAGGGGAAGGAAGAGGACGCAGCGACCATCTCAACGAAA
GGATCTGACAAGAAGGAGCGAGAGACCATCACCACTCCTATAGGAACCCT
AGACAACACCAAGAAGTCGAAAAAGGGCAAGAAGAAAAGGAAGGCGGGGG
AGGAGGGGGAGGCAGCGGTGGAGGACGAGCCCGCCACCCCGCGTCAATCC
AAGAAGAAACAGAAGAATGGGGCACCGACGACAGCAGCATTGAAAGGGGG
CAATGACGGTGACAAGCATTCACTAGCAGCAGTAGGAGAAGCAGAAGTCT
CCTTTCCATGGGGGAAGACTATTAAGAGACTCATCAAGAAGGCTGAGGGA
AGAAAAATGGACCGGCAAACATTGCAAAAAGAGGCACTTGCTCTGGCTTC
GAAGACGAGCACCCAAAGTAAGAAAGGACTCAAAAGACAATTTAAAGAGG
CATTGGGTGGAGGCGTGGCAGGTGTGCAGGTGAACGGGGAAGTGGTCATG
CTAGTTAAATAGTAACGCTGGGCAGGGAATAAGCGTGGGATTATTGGTGG
CAGAGAGAAGGCCCAAAAAGACATCAAAACTCAAAAAAATCAAAAACCAA
AAAGCATATGCTCAAGGAAAAGCATGGAGAACACCCGCAGAGAATTGAGA
TAT
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Coding sequence (CDS) from alignment at scaffold_11:194934..196386-

>mRNA_5642 ID=mRNA_5642|Name=jgi.p|Nanoce1779_2|589817|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_11:194934..196386- (Nannochloropsis oceanica)
ATGGTCTTCTTCTCTTGCGAAGGTTGCAATGAGACGCTGAAAAAAAACCA
AGTTGAGAACCATATTCGACGGGCGTCCTGTGGCCACTACCCGGTATCGT
GTGTGGACTGCAGTCAAGTCTTTCACGGCGCGGACTATCAAGCCCACACG
ACCTGCATCTCTGAGGCGGAAAAGTATGAGAAGTCCCTCTACAAAGGCCC
CAGGGCGGGCGGCGGGGGTGGCAAGGGGAAGAAACGTAACCCACAGGAGG
AATGGATGGACATGATTGGTTTGGCTGCGGCCGAGGAAGAGAGTGTGGTG
GGCTTAAGTCCGTCCCTTCAGGGGCAGCTGCCGCGCATGGCCGAGCTAGG
CAATGTGCCTCGAAACGAGAAGAAGTTCAAGAATTTTCTGAGCAACAGCT
TACGGGTACGTATATAG
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Synonyms
Publications