jgi.p|Nanoce1779_2|565999, mRNA_5641 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565999
Unique NamemRNA_5641
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length552
Alignment locationscaffold_11:195075..195626 -

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Properties
Property NameValue
TranscriptId566085
TrackFilteredModels2
ProteinId565999
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:195075..195626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565999gene_5641Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5641CDS_5641Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565999mRNA_5641-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5641 ID=mRNA_5641|Name=jgi.p|Nanoce1779_2|565999|organism=Nannochloropsis oceanica|type=mRNA|length=552bp
ATGAACGAGGCCGAGGAGAAGAAGAAGAAGGAGAGGAAGGATGAGGAGAA
GGAGGGGAAGGAAGAGGACGCAGCGACCATCTCAACGAAAGGATCTGACA
AGAAGGAGCGAGAGACCATCACCACTCCTATAGGAACCCTAGACAACACC
AAGAAGTCGAAAAAGGGCAAGAAGAAAAGGAAGGCGGGGGAGGAGGGGGA
GGCAGCGGTGGAGGACGAGCCCGCCACCCCGCGTCAATCCAAGAAGAAAC
AGAAGAATGGGGCACCGACGACAGCAGCATTGAAAGGGGGCAATGACGGT
GACAAGCATTCACTAGCAGCAGTAGGAGAAGCAGAAGTCTCCTTTCCATG
GGGGAAGACTATTAAGAGACTCATCAAGAAGGCTGAGGGAAGAAAAATGG
ACCGGCAAACATTGCAAAAAGAGGCACTTGCTCTGGCTTCGAAGACGAGC
ACCCAAAGTAAGAAAGGACTCAAAAGACAATTTAAAGAGGCATTGGGTGG
AGGCGTGGCAGGTGTGCAGGTGAACGGGGAAGTGGTCATGCTAGTTAAAT
AG
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protein sequence of jgi.p|Nanoce1779_2|565999

>mRNA_5641-protein ID=mRNA_5641-protein|Name=jgi.p|Nanoce1779_2|565999|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MNEAEEKKKKERKDEEKEGKEEDAATISTKGSDKKERETITTPIGTLDNT
KKSKKGKKKRKAGEEGEAAVEDEPATPRQSKKKQKNGAPTTAALKGGNDG
DKHSLAAVGEAEVSFPWGKTIKRLIKKAEGRKMDRQTLQKEALALASKTS
TQSKKGLKRQFKEALGGGVAGVQVNGEVVMLVK*
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mRNA from alignment at scaffold_11:195075..195626-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5641 ID=mRNA_5641|Name=jgi.p|Nanoce1779_2|565999|organism=Nannochloropsis oceanica|type=mRNA|length=552bp|location=Sequence derived from alignment at scaffold_11:195075..195626- (Nannochloropsis oceanica)
ATGAACGAGGCCGAGGAGAAGAAGAAGAAGGAGAGGAAGGATGAGGAGAA GGAGGGGAAGGAAGAGGACGCAGCGACCATCTCAACGAAAGGATCTGACA AGAAGGAGCGAGAGACCATCACCACTCCTATAGGAACCCTAGACAACACC AAGAAGTCGAAAAAGGGCAAGAAGAAAAGGAAGGCGGGGGAGGAGGGGGA GGCAGCGGTGGAGGACGAGCCCGCCACCCCGCGTCAATCCAAGAAGAAAC AGAAGAATGGGGCACCGACGACAGCAGCATTGAAAGGGGGCAATGACGGT GACAAGCATTCACTAGCAGCAGTAGGAGAAGCAGAAGTCTCCTTTCCATG GGGGAAGACTATTAAGAGACTCATCAAGAAGGCTGAGGGAAGAAAAATGG ACCGGCAAACATTGCAAAAAGAGGCACTTGCTCTGGCTTCGAAGACGAGC ACCCAAAGTAAGAAAGGACTCAAAAGACAATTTAAAGAGGCATTGGGTGG AGGCGTGGCAGGTGTGCAGGTGAACGGGGAAGTGGTCATGCTAGTTAAAT AG
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Coding sequence (CDS) from alignment at scaffold_11:195075..195626-

>mRNA_5641 ID=mRNA_5641|Name=jgi.p|Nanoce1779_2|565999|organism=Nannochloropsis oceanica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_11:195075..195626- (Nannochloropsis oceanica)
ATGAACGAGGCCGAGGAGAAGAAGAAGAAGGAGAGGAAGGATGAGGAGAA
GGAGGGGAAGGAAGAGGACGCAGCGACCATCTCAACGAAAGGATCTGACA
AGAAGGAGCGAGAGACCATCACCACTCCTATAGGAACCCTAGACAACACC
AAGAAGTCGAAAAAGGGCAAGAAGAAAAGGAAGGCGGGGGAGGAGGGGGA
GGCAGCGGTGGAGGACGAGCCCGCCACCCCGCGTCAATCCAAGAAGAAAC
AGAAGAATGGGGCACCGACGACAGCAGCATTGAAAGGGGGCAATGACGGT
GACAAGCATTCACTAGCAGCAGTAGGAGAAGCAGAAGTCTCCTTTCCATG
GGGGAAGACTATTAAGAGACTCATCAAGAAGGCTGAGGGAAGAAAAATGG
ACCGGCAAACATTGCAAAAAGAGGCACTTGCTCTGGCTTCGAAGACGAGC
ACCCAAAGTAAGAAAGGACTCAAAAGACAATTTAAAGAGGCATTGGGTGG
AGGCGTGGCAGGTGTGCAGGTGAACGGGGAAGTGGTCATGCTAGTTAAAT
AG
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Synonyms
Publications