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Properties
| Property Name | Value |
|---|
| TranscriptId | 33369 |
| Track | FilteredModels2 |
| ProteinId | 33283 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:192651..194897 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5640 ID=mRNA_5640|Name=jgi.p|Nanoce1779_2|33283|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
TCCTGCCCCTTCTTCATGTTTTACTTTTTTATGTCTGGTTTATTTTGAGC
AAGATTAGTCACTACTCTCAAGAAAGGCTTTTGCTGGCGCATACCGAAAC
AGGCTGACACTGTAGAGTAGCAGGCCAACATTTTGAAAAGCTGTGAGCAC
TTCCTAGCATTCACGGTTGTCGTTCGATGGTGAGACAAACGAAGGCCCGC
CGCCTGTGCTTCCCGTCTTCCTCCCCTCCTCCCCTTCCTCCTCCCCCTCC
GTCTTCCCCCTCCACCCCCTCTTCCAGTTCCTTTTTCCTCCTTTTTCTTC
CGCGCAGACCAAAAATGCTACACCGGGGGACTCCGCCCCCGGTGGTCTTA
CGCAGACCGATTATTGGCGTGATGGGCTCAGGCCGGGAACCGCACGTGGA
GCTATCCGAACCTCTAGGTACCTGGCTGGCGTCCACGGGCTGCAATCTCC
TCACAGGTGGAGGACGTGGGGTGATGGAATGTGTGTCCCGGACGTTCTCC
GAAGTCCCGGGACGGGAAGGGCAGATTATTGGCGTGATTCCTGCGTTGCC
CGGGTCGCAGAATGATGACAATGTCATTCCGCCGGCTGGCTACCCAAATC
CCTACACTGAGATCGTCATTCGGACTCAATGTCCACTCTCCATGCACCCT
CTCACGGGCACGGAGCTCACCTCAAGAAATCACATCAACATTTTATCTTC
TGATATTGTGGTGGCCCTGCCTGGCTCTTCAGGCACATGGAGCGAGATCC
AGCTAGCGATCAGGTACCGCAAGCCGCTCATCCTTTTCCTCGGGGAAGAA
GGCGACGACGTCGACATAGCCGTAGAGGAGTTTGAGGACATTAAGATAGC
CAAGAACCTGCACGAGGTGCAGGTCTACTTGGAGGAGGCACTGGAGCGAC
GGCGCCTCCGCATCACGTCCTCCTTCCACTCTCTGGGGTCTCCCAATATC
TCCTCCTCCCCGAACACGACGATGGGGGGAGGAGGAGGAGGAGGAGGGGG
AGGAGGAGGGGGAGGGAAAGAGGCTGTTCAGCAACGGCAGCAGCAACAAC
AACAACAACAAGGAGCACGGCAATCACCCCTGTCTTCGCCTGAACTGGTG
AAGGGCGGGGTTGGGGAAGGGAGGGAAGAAGGGATGATGAGGAATGGAGC
AGCAGCAGCAGTGGGTGGAGGAGGGGGAGGAGGAGGAGGAGAGCAGGAAA
AGGTGATTGGGAATGAGAAAGGGAGGGAGGAGGGAAGGAGGGAGGGGTAG
ATGCTTCTGCGTGATAGCGAGGGGTCCAAAAGGAGTAAAAAGAGAATAAG
ACGAGAGAGCGGCAGCAACAGCAGCGGCACCAGCTGCAGCAGCAGCA back to topprotein sequence of jgi.p|Nanoce1779_2|33283 >mRNA_5640-protein ID=mRNA_5640-protein|Name=jgi.p|Nanoce1779_2|33283|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MVRQTKARRLCFPSSSPPPLPPPPPSSPSTPSSSSFFLLFLPRRPKMLHR
GTPPPVVLRRPIIGVMGSGREPHVELSEPLGTWLASTGCNLLTGGGRGVM
ECVSRTFSEVPGREGQIIGVIPALPGSQNDDNVIPPAGYPNPYTEIVIRT
QCPLSMHPLTGTELTSRNHINILSSDIVVALPGSSGTWSEIQLAIRYRKP
LILFLGEEGDDVDIAVEEFEDIKIAKNLHEVQVYLEEALERRRLRITSSF
HSLGSPNISSSPNTTMGGGGGGGGGGGGGGKEAVQQRQQQQQQQQGARQS
PLSSPELVKGGVGEGREEGMMRNGAAAAVGGGGGGGGGEQEKVIGNEKGR
EEGRREG* back to topmRNA from alignment at scaffold_11:192651..194897- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5640 ID=mRNA_5640|Name=jgi.p|Nanoce1779_2|33283|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at scaffold_11:192651..194897- (Nannochloropsis oceanica)
TCCTGCCCCTTCTTCATGTTTTACTTTTTTATGTCTGGTTTATTTTGAGC
AAGATTAGTCACTACTCTCAAGAAAGGCTTTTGCTGGCGCATACCGAAAC
AGGCTGACACTGTAGAGTAGCAGGCCAACATTTTGAAAAGCTGTGAGCAC
TTCCTAGCATTCACGGTTGTCGTTCGATGGTGAGACAAACGAAGGTGGGT
GATTATCATATTATTCAGCCTTTCGTTTCGACCAGCTATTCCTCGCTCGG
ATCGCCTCATCAGATATCATCATGCGACCTGCGATTATTTGCCTTGCCTA
TATGGCGCGGCACACATGCCCTTAGGATCCCACAGCACCCGCACCACCTC
CAACAGGACAAGAAGTAGACAATGGAAATGTGGTGGATGGTCGCAGGGGC
GGTTGAGTCATAACAACGTCGTCACGCGCCACCGATCATACTCTAGAGCA
GCAGCATTGTAACAGCATATAGCACTGCTCTTGCCCTCCCAATGTGTGCT
GATCGCCTTCCCATCGACCGATCCTTTACACACTTATGAGACGCCATACC
TTACGGCATATTCTTCCTCTTTATTTATCCCTCGATCCAATTTCTTTACC
AACAAACTACAGGCCCGCCGCCTGTGCTTCCCGTCTTCCTCCCCTCCTCC
CCTTCCTCCTCCCCCTCCGTCTTCCCCCTCCACCCCCTCTTCCAGTTCCT
TTTTCCTCCTTTTTCTTCCGCGCAGACCAAAAATGCTACACCGGGGGACT
CCGCCCCCGGTGGTCTTACGCAGACCGATTATTGGCGTGATGGGCTCAGG
CCGGGAACCGCACGTGGAGCTATCCGAACCTCTAGGTACCTGGCTGGCGT
CCACGGGCTGCAATCTCCTCACAGGTGGAGGACGTGGGGTGATGGAATGT
GTGTCCCGGACGTTCTCCGAAGTCCCGGGACGGGAAGGGCAGATTATTGG
CGTGATTCCTGCGTTGCCCGGGTCGCAGAATGATGACAATGTCATTCCGC
CGGCTGGTACGTGGGTGGGAGAGGGTTGGGATCGGAGATGGGGAAGGAGG
AGGGATGGGAGGAAGGAAAGGGATACAATAGCACGGTTTGATATGATCGA
ACGCGTGGCTTCTGGATACATGCCTTGGCAAGCCTGAAACAGTGAAACAG
TAGAGCGCTACTTCTGGCTTATGCTCACCTTTCGTCCTCCCTCCCATTTC
CCTCCCTCCTTCCCCCCCTCCCGTCTCATCAGGCTACCCAAATCCCTACA
CTGAGATCGTCATTCGGACTCAATGTCCACTCTCCATGCACCCTCTCACG
GGCACGGAGCTCACCTCAAGAAATCACATCAACATTTTATCTTCTGATAT
TGTGGTGGCCCTGCCTGGCTCTTCAGGCACATGGAGCGAGATCCAGCTAG
CGATCAGGTAGGCCTTTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTC
CCCCCTCCTTCTTTTCTCCTGTCCTGATATATACGATGTGGTGGCCTTGG
CTGGCGCCTCATATGTGTGAAGTAAGTTTCTGAAAGAGCAATGATCAGGT
AGTTTTTGCCCTCCCTCCCTCCCTCCTTCCCTCCCTCTCTCCCTCCCTCC
CTCCTCCCTTCATCCAACACCCCGCCTATTGCCCCCTTCCTCTCTCCCTC
CGTTCCTCCGCAGGTACCGCAAGCCGCTCATCCTTTTCCTCGGGGAAGAA
GGCGACGACGTCGACATAGCCGTAGAGGAGTTTGAGGACATTAAGATAGC
CAAGAACCTGCACGAGGTGCAGGTCTACTTGGAGGAGGCACTGGAGCGAC
GGCGCCTCCGCATCACGTCCTCCTTCCACTCTCTGGGGTCTCCCAATATC
TCCTCCTCCCCGAACACGACGATGGGGGGAGGAGGAGGAGGAGGAGGGGG
AGGAGGAGGGGGAGGGAAAGAGGCTGTTCAGCAACGGCAGCAGCAACAAC
AACAACAACAAGGAGCACGGCAATCACCCCTGTCTTCGCCTGAACTGGTG
AAGGGCGGGGTTGGGGAAGGGAGGGAAGAAGGGATGATGAGGAATGGAGC
AGCAGCAGCAGTGGGTGGAGGAGGGGGAGGAGGAGGAGGAGAGCAGGAAA
AGGTGATTGGGAATGAGAAAGGGAGGGAGGAGGGAAGGAGGGAGGGGTAG
ATGCTTCTGCGTGATAGCGAGGGGTCCAAAAGGAGTAAAAAGAGAATAAG
ACGAGAGAGCGGCAGCAACAGCAGCGGCACCAGCTGCAGCAGCAGCA back to topCoding sequence (CDS) from alignment at scaffold_11:192651..194897- >mRNA_5640 ID=mRNA_5640|Name=jgi.p|Nanoce1779_2|33283|organism=Nannochloropsis oceanica|type=CDS|length=4296bp|location=Sequence derived from alignment at scaffold_11:192651..194897- (Nannochloropsis oceanica)
GTACCGCAAGCCGCTCATCCTTTTCCTCGGGGAAGAAGGCGACGACGTCG
ACATAGCCGTAGAGGAGTTTGAGGACATTAAGATAGCCAAGAACCTGCAC
GAGGTGCAGGTCTACTTGGAGGAGGCACTGGAGCGACGGCGCCTCCGCAT
CACGTCCTCCTTCCACTCTCTGGGGTCTCCCAATATCTCCTCCTCCCCGA
ACACGACGATGGGGGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGGGGA
GGGAAAGAGGCTGTTCAGCAACGGCAGCAGCAACAACAACAACAACAAGG
AGCACGGCAATCACCCCTGTCTTCGCCTGAACTGGTGAAGGGCGGGGTTG
GGGAAGGGAGGGAAGAAGGGATGATGAGGAATGGAGCAGCAGCAGCAGTG
GGTGGAGGAGGGGGAGGAGGAGGAGGAGAGCAGGAAAAGGTGATTGGGAA
TGAGAAAGGGAGGGAGGAGGGAAGGAGGGAGGGGTAGGCTACCCAAATCC
CTACACTGAGATCGTCATTCGGACTCAATGTCCACTCTCCATGCACCCTC
TCACGGGCACGGAGCTCACCTCAAGAAATCACATCAACATTTTATCTTCT
GATATTGTGGTGGCCCTGCCTGGCTCTTCAGGCACATGGAGCGAGATCCA
GCTAGCGATCAGGCCCGCCGCCTGTGCTTCCCGTCTTCCTCCCCTCCTCC
CCTTCCTCCTCCCCCTCCGTCTTCCCCCTCCACCCCCTCTTCCAGTTCCT
TTTTCCTCCTTTTTCTTCCGCGCAGACCAAAAATGCTACACCGGGGGACT
CCGCCCCCGGTGGTCTTACGCAGACCGATTATTGGCGTGATGGGCTCAGG
CCGGGAACCGCACGTGGAGCTATCCGAACCTCTAGGTACCTGGCTGGCGT
CCACGGGCTGCAATCTCCTCACAGGTGGAGGACGTGGGGTGATGGAATGT
GTGTCCCGGACGTTCTCCGAAGTCCCGGGACGGGAAGGGCAGATTATTGG
CGTGATTCCTGCGTTGCCCGGGTCGCAGAATGATGACAATGTCATTCCGC
CGGCTGATGGTGAGACAAACGAAGGTACCGCAAGCCGCTCATCCTTTTCC
TCGGGGAAGAAGGCGACGACGTCGACATAGCCGTAGAGGAGTTTGAGGAC
ATTAAGATAGCCAAGAACCTGCACGAGGTGCAGGTCTACTTGGAGGAGGC
ACTGGAGCGACGGCGCCTCCGCATCACGTCCTCCTTCCACTCTCTGGGGT
CTCCCAATATCTCCTCCTCCCCGAACACGACGATGGGGGGAGGAGGAGGA
GGAGGAGGGGGAGGAGGAGGGGGAGGGAAAGAGGCTGTTCAGCAACGGCA
GCAGCAACAACAACAACAACAAGGAGCACGGCAATCACCCCTGTCTTCGC
CTGAACTGGTGAAGGGCGGGGTTGGGGAAGGGAGGGAAGAAGGGATGATG
AGGAATGGAGCAGCAGCAGCAGTGGGTGGAGGAGGGGGAGGAGGAGGAGG
AGAGCAGGAAAAGGTGATTGGGAATGAGAAAGGGAGGGAGGAGGGAAGGA
GGGAGGGGTAGGCTACCCAAATCCCTACACTGAGATCGTCATTCGGACTC
AATGTCCACTCTCCATGCACCCTCTCACGGGCACGGAGCTCACCTCAAGA
AATCACATCAACATTTTATCTTCTGATATTGTGGTGGCCCTGCCTGGCTC
TTCAGGCACATGGAGCGAGATCCAGCTAGCGATCAGGCCCGCCGCCTGTG
CTTCCCGTCTTCCTCCCCTCCTCCCCTTCCTCCTCCCCCTCCGTCTTCCC
CCTCCACCCCCTCTTCCAGTTCCTTTTTCCTCCTTTTTCTTCCGCGCAGA
CCAAAAATGCTACACCGGGGGACTCCGCCCCCGGTGGTCTTACGCAGACC
GATTATTGGCGTGATGGGCTCAGGCCGGGAACCGCACGTGGAGCTATCCG
AACCTCTAGGTACCTGGCTGGCGTCCACGGGCTGCAATCTCCTCACAGGT
GGAGGACGTGGGGTGATGGAATGTGTGTCCCGGACGTTCTCCGAAGTCCC
GGGACGGGAAGGGCAGATTATTGGCGTGATTCCTGCGTTGCCCGGGTCGC
AGAATGATGACAATGTCATTCCGCCGGCTGATGGTGAGACAAACGAAGGT
ACCGCAAGCCGCTCATCCTTTTCCTCGGGGAAGAAGGCGACGACGTCGAC
ATAGCCGTAGAGGAGTTTGAGGACATTAAGATAGCCAAGAACCTGCACGA
GGTGCAGGTCTACTTGGAGGAGGCACTGGAGCGACGGCGCCTCCGCATCA
CGTCCTCCTTCCACTCTCTGGGGTCTCCCAATATCTCCTCCTCCCCGAAC
ACGACGATGGGGGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGGGGAGG
GAAAGAGGCTGTTCAGCAACGGCAGCAGCAACAACAACAACAACAAGGAG
CACGGCAATCACCCCTGTCTTCGCCTGAACTGGTGAAGGGCGGGGTTGGG
GAAGGGAGGGAAGAAGGGATGATGAGGAATGGAGCAGCAGCAGCAGTGGG
TGGAGGAGGGGGAGGAGGAGGAGGAGAGCAGGAAAAGGTGATTGGGAATG
AGAAAGGGAGGGAGGAGGGAAGGAGGGAGGGGTAGGCTACCCAAATCCCT
ACACTGAGATCGTCATTCGGACTCAATGTCCACTCTCCATGCACCCTCTC
ACGGGCACGGAGCTCACCTCAAGAAATCACATCAACATTTTATCTTCTGA
TATTGTGGTGGCCCTGCCTGGCTCTTCAGGCACATGGAGCGAGATCCAGC
TAGCGATCAGGCCCGCCGCCTGTGCTTCCCGTCTTCCTCCCCTCCTCCCC
TTCCTCCTCCCCCTCCGTCTTCCCCCTCCACCCCCTCTTCCAGTTCCTTT
TTCCTCCTTTTTCTTCCGCGCAGACCAAAAATGCTACACCGGGGGACTCC
GCCCCCGGTGGTCTTACGCAGACCGATTATTGGCGTGATGGGCTCAGGCC
GGGAACCGCACGTGGAGCTATCCGAACCTCTAGGTACCTGGCTGGCGTCC
ACGGGCTGCAATCTCCTCACAGGTGGAGGACGTGGGGTGATGGAATGTGT
GTCCCGGACGTTCTCCGAAGTCCCGGGACGGGAAGGGCAGATTATTGGCG
TGATTCCTGCGTTGCCCGGGTCGCAGAATGATGACAATGTCATTCCGCCG
GCTGATGGTGAGACAAACGAAGGTACCGCAAGCCGCTCATCCTTTTCCTC
GGGGAAGAAGGCGACGACGTCGACATAGCCGTAGAGGAGTTTGAGGACAT
TAAGATAGCCAAGAACCTGCACGAGGTGCAGGTCTACTTGGAGGAGGCAC
TGGAGCGACGGCGCCTCCGCATCACGTCCTCCTTCCACTCTCTGGGGTCT
CCCAATATCTCCTCCTCCCCGAACACGACGATGGGGGGAGGAGGAGGAGG
AGGAGGGGGAGGAGGAGGGGGAGGGAAAGAGGCTGTTCAGCAACGGCAGC
AGCAACAACAACAACAACAAGGAGCACGGCAATCACCCCTGTCTTCGCCT
GAACTGGTGAAGGGCGGGGTTGGGGAAGGGAGGGAAGAAGGGATGATGAG
GAATGGAGCAGCAGCAGCAGTGGGTGGAGGAGGGGGAGGAGGAGGAGGAG
AGCAGGAAAAGGTGATTGGGAATGAGAAAGGGAGGGAGGAGGGAAGGAGG
GAGGGGTAGGCTACCCAAATCCCTACACTGAGATCGTCATTCGGACTCAA
TGTCCACTCTCCATGCACCCTCTCACGGGCACGGAGCTCACCTCAAGAAA
TCACATCAACATTTTATCTTCTGATATTGTGGTGGCCCTGCCTGGCTCTT
CAGGCACATGGAGCGAGATCCAGCTAGCGATCAGGCCCGCCGCCTGTGCT
TCCCGTCTTCCTCCCCTCCTCCCCTTCCTCCTCCCCCTCCGTCTTCCCCC
TCCACCCCCTCTTCCAGTTCCTTTTTCCTCCTTTTTCTTCCGCGCAGACC
AAAAATGCTACACCGGGGGACTCCGCCCCCGGTGGTCTTACGCAGACCGA
TTATTGGCGTGATGGGCTCAGGCCGGGAACCGCACGTGGAGCTATCCGAA
CCTCTAGGTACCTGGCTGGCGTCCACGGGCTGCAATCTCCTCACAGGTGG
AGGACGTGGGGTGATGGAATGTGTGTCCCGGACGTTCTCCGAAGTCCCGG
GACGGGAAGGGCAGATTATTGGCGTGATTCCTGCGTTGCCCGGGTCGCAG
AATGATGACAATGTCATTCCGCCGGCTGATGGTGAGACAAACGAAG back to top
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