jgi.p|Nanoce1779_2|577724, mRNA_564 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577724
Unique NamemRNA_564
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length721
Alignment locationscaffold_3:1367893..1369392 +

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Properties
Property NameValue
TranscriptId577810
TrackFilteredModels2
ProteinId577724
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1367893..1369392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577724gene_564Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577724mRNA_564-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_564CDS_564Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_564 ID=mRNA_564|Name=jgi.p|Nanoce1779_2|577724|organism=Nannochloropsis oceanica|type=mRNA|length=721bp
AGCCCTCCCCTCCTCCAAGACACCACCACCAAACCACACCATAACAAGCC
ATGGCACAAAAGCTCACCCCCGACCAACAAGAGGCGGTCATCCACAAGTT
TCGCTCGGAGATGGCAGCGCAAGCCATGCAGGAACTGGTGCAAAAAATGA
CCGACAAATGCTTCACCAAGTGCACCGGGAAGAGTGGGAATCGTCTGGAG
TCCAAGGAGCAAAGTTGCGTCGCCATGTGCATGGATCGGTACATTGAGAC
CATGAACGTCGTGCAACATACCCTGAGTGAGCGCAGCGCCACACGATAGA
TTAAAATATCCACAGGTTGACGGAAAAGAAAACGGGAGGAGTTGGAAAGA
ATCAAGCCTTGACATATTATTTGAGCTTTCAATTGCGGGGGGAGGGGGTA
AATTGGCCGATTTGGTCAAGAGAGTCCGAGACGAACATCGTGTTTCCACT
ATCACGCCTTGGGGGGGCACAGCATACGCAAATGTCGTCAGCCATGTTAC
GTTATTTACCTTTTCCCCCCACTTAACGCTTCAGAGGTCATTTTTACTAT
TCGTAAGTTAGGCATCAAAACCCACCTCCCACCAAAAATATGCAATCGAA
AATACTATTATGGGGTAAACAACGACACTCCCTACGAGGAACCCCGACCT
CCCTTTGACCAACCCTTCTTGGGATCAATCCCTTCCACCGAGCGAAGCAA
ATAAATTAAGTAAAATTGACA
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protein sequence of jgi.p|Nanoce1779_2|577724

>mRNA_564-protein ID=mRNA_564-protein|Name=jgi.p|Nanoce1779_2|577724|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MAQKLTPDQQEAVIHKFRSEMAAQAMQELVQKMTDKCFTKCTGKSGNRLE
SKEQSCVAMCMDRYIETMNVVQHTLSERSATR*
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mRNA from alignment at scaffold_3:1367893..1369392+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_564 ID=mRNA_564|Name=jgi.p|Nanoce1779_2|577724|organism=Nannochloropsis oceanica|type=mRNA|length=1500bp|location=Sequence derived from alignment at scaffold_3:1367893..1369392+ (Nannochloropsis oceanica)
AGCCCTCCCCTCCTCCAAGACACCACCACCAAACCACACCATAACAAGCC
ATGGCACAAAAGCTCACCCCCGACCAACAAGAGGCGGTCATCCACAAGGT
TAGTGTATAGTACGAGGATAGAATGGAGGCTTCTTTGCTTGTGCGTAGTG
GAGGAGGGGAGTGGGAAGGGATGGATGCATGTGTTCTGGGGCAAGCTGCA
GGGCGTGTCGGAGGCAATATGGCAGCAGTGATATCCATATCTCAGCCGAA
TAAGGTCATATAAGTATAGGGAGGCCTCATGTCAAAACCTGCTTGGCGTT
TAGTCGGTGTATTTGTCATGTGGCTGGGAGATGTGATGCAGGGACGAGGC
AAAAAGGGTAGCCTCACGGGGTGAGCTCCTTATAGCGCACTAGCACTCCC
ATGCTGGCATAATTTGGATGTCTTATGTCGAAGGGAACCTTTGGACAGCA
TCTGAAGAGATGGATGAACTTTTTACAATGAGCTTGGTAACAGTGCCCGT
CCTCTCGATTATCCGCTGTCCAGGCATGTTAATTTCTCTTCAAGGAGAGA
TGGAAGAGGATTGATAAAGCGACACGTGATTCAAAATAAGCGCCGGCATG
TAATCTGTCTTTTCAAGTTGTTTTTTCGCGTCATTTAGCGTAGGAAACTT
TGGATGAAGGGCGGTGTTTCTTCCTCTGCTCATATTCTGCTTTTCCTCAC
CACAGTTTCGCTCGGAGATGGCAGCGCAAGCCATGCAGGAACTGGTGCAA
AAAATGACCGACAAATGCTTCACCAAGTGCACCGGGAAGAGTGGGAATCG
TCTGGAGTCCAAGGTAAAGGGGGATTGGGAGGGTGCATGAGGGCGGGGAG
GGGGAAAGCCGCCAATCATAGAACAGAGGGGCGGAAGAAGGGGGACAATA
ATTTTATATATATATATAGATAATTTACCGCCCACTTTTGATATCTTGAT
ATCTCCCCACACTCTCCTTCTTACAAAATGTGCAGGAGCAAAGTTGCGTC
GCCATGTGCATGGATCGGTACATTGAGACCATGAACGTCGTGCAACATAC
CCTGAGTGAGCGCAGCGCCACACGATAGATTAAAATATCCACAGGTTGAC
GGAAAAGAAAACGGGAGGAGTTGGAAAGAATCAAGCCTTGACATATTATT
TGAGCTTTCAATTGCGGGGGGAGGGGGTAAATTGGCCGATTTGGTCAAGA
GAGTCCGAGACGAACATCGTGTTTCCACTATCACGCCTTGGGGGGGCACA
GCATACGCAAATGTCGTCAGCCATGTTACGTTATTTACCTTTTCCCCCCA
CTTAACGCTTCAGAGGTCATTTTTACTATTCGTAAGTTAGGCATCAAAAC
CCACCTCCCACCAAAAATATGCAATCGAAAATACTATTATGGGGTAAACA
ACGACACTCCCTACGAGGAACCCCGACCTCCCTTTGACCAACCCTTCTTG
GGATCAATCCCTTCCACCGAGCGAAGCAAATAAATTAAGTAAAATTGACA
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Coding sequence (CDS) from alignment at scaffold_3:1367893..1369392+

>mRNA_564 ID=mRNA_564|Name=jgi.p|Nanoce1779_2|577724|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_3:1367893..1369392+ (Nannochloropsis oceanica)
ATGGCACAAAAGCTCACCCCCGACCAACAAGAGGCGGTCATCCACAAGTT
TCGCTCGGAGATGGCAGCGCAAGCCATGCAGGAACTGGTGCAAAAAATGA
CCGACAAATGCTTCACCAAGTGCACCGGGAAGAGTGGGAATCGTCTGGAG
TCCAAGGAGCAAAGTTGCGTCGCCATGTGCATGGATCGGTACATTGAGAC
CATGAACGTCGTGCAACATACCCTGAGTGAGCGCAGCGCCACACGATAGA
TGGCACAAAAGCTCACCCCCGACCAACAAGAGGCGGTCATCCACAAGTTT
CGCTCGGAGATGGCAGCGCAAGCCATGCAGGAACTGGTGCAAAAAATGAC
CGACAAATGCTTCACCAAGTGCACCGGGAAGAGTGGGAATCGTCTGGAGT
CCAAGGAGCAAAGTTGCGTCGCCATGTGCATGGATCGGTACATTGAGACC
ATGAACGTCGTGCAACATACCCTGAGTGAGCGCAGCGCCACACGATAGAT
GGCACAAAAGCTCACCCCCGACCAACAAGAGGCGGTCATCCACAAGTTTC
GCTCGGAGATGGCAGCGCAAGCCATGCAGGAACTGGTGCAAAAAATGACC
GACAAATGCTTCACCAAGTGCACCGGGAAGAGTGGGAATCGTCTGGAGTC
CAAGGAGCAAAGTTGCGTCGCCATGTGCATGGATCGGTACATTGAGACCA
TGAACGTCGTGCAACATACCCTGAGTGAGCGCAGCGCCACACGATAG
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Synonyms
Publications