jgi.p|Nanoce1779_2|589811, mRNA_5639 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589811
Unique NamemRNA_5639
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length637
Alignment locationscaffold_11:190931..192032 +

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Properties
Property NameValue
TranscriptId589897
TrackFilteredModels2
ProteinId589811
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:190931..192032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589811gene_5639Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589811mRNA_5639-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5639CDS_5639Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5639 ID=mRNA_5639|Name=jgi.p|Nanoce1779_2|589811|organism=Nannochloropsis oceanica|type=mRNA|length=637bp
ACGACAGGCACAAAGTACGTCAACACGTGTCGGGGCAGCAGCAGCAGAGG
ACAAGTTTCCAACTTGCCTCCTCAAAGGTTCTCCAATCCCGCTATCTATA
GCTTGCGCTCACGCACTTCTGTCCTCCCTACCCAAGGCAAGCGCACAACT
CATTCAGTTCCTTGGGGGGATGGGACGCCTCTTCATAAGGTGCTTGGACG
GTCCTCAGGTTTGGTGCTGCTCGCGATGCCAAACGCACTTGTCATCGAAT
GACCAAATTATAAGCAAGCAATTTACGGGCCGTGGGGGCCGCGCATTTTT
GTTTGACAAAGTGGTGAACGTCACCACGGGCCCTCATGAGAAGCGCGTGC
TCATCACAGGGCTGCACACCGTGGCGGATATATACTGCCTGGACTGCGAG
ACGCTCGTAGGCTGGAAGTACGAAGAAGCGTTTGAGCGAAGCCAAAAATA
TAAGGAAGGCAAATATATCTTGGAAAGGACGCGGATCATCAAGGATCCCG
ACGAAGGGTGGTAAGGGAAGGAGGAAGGGAAGGAGGGAGGCAGGGTAGGA
TGGTGTATATGACGGCGGTCTTGAGAGTATACGAAGAGGGGAAGCATGTT
CCGGAGGCGCTGGCTGACAAGGACCTTGACGGGGGAG
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protein sequence of jgi.p|Nanoce1779_2|589811

>mRNA_5639-protein ID=mRNA_5639-protein|Name=jgi.p|Nanoce1779_2|589811|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MGRLFIRCLDGPQVWCCSRCQTHLSSNDQIISKQFTGRGGRAFLFDKVVN
VTTGPHEKRVLITGLHTVADIYCLDCETLVGWKYEEAFERSQKYKEGKYI
LERTRIIKDPDEGW*
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mRNA from alignment at scaffold_11:190931..192032+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5639 ID=mRNA_5639|Name=jgi.p|Nanoce1779_2|589811|organism=Nannochloropsis oceanica|type=mRNA|length=1102bp|location=Sequence derived from alignment at scaffold_11:190931..192032+ (Nannochloropsis oceanica)
ACGACAGGCACAAAGTACGTCAACACGTGTCGGGGCAGCAGCAGCAGAGG
ACAAGTTTCCAACTTGCCTCCTCAAAGGTTCTCCAATCCCGCTATCTATA
GCTTGCGCTCACGCACTTCTGTCCTCCCTACCCAAGGCAAGCGCACAACT
CATTCAGTTCCTTGGGGGGATGGGACGCCTCTTCATAAGGTACGCCGCAA
ACCGTATCTCACTCCCTCGAAAACCTCCCCACACTGACAGCTCCTCCCTC
TTTCCTTCCTCCTTCCCTCCCTCCCCTTCCTACATCCAAGGTGCTTGGAC
GGTCCTCAGGTTTGGTGCTGCTCGCGATGCCAAACGCACTTGTCATCGAA
TGACCAAATTATAAGCAAGCAATTTACGGGCCGTGGGGGCCGCGCATTTT
TGTTTGACAAAGTGTAAGTTAGCGATTGAAAAAGAGGGAAGAAGGGAAGA
AAAAACCTGAGGCGAGGGAAGAGGAGGCGCTCAAACGTGCTTTGCAAGCG
AAAAGAGAAATTGTGTCATGATCCGTGATGATTTTATCATCGTTTCTTTC
CACACTCGAGGACTCAAATGAGTACCCACTCGCTCCTCCTAACCCTTTTT
GGATTGATAGGGTGAACGTCACCACGGGCCCTCATGAGAAGCGCGTGCTC
ATCACAGGGCTGCACACCGTGGCGGATATATACTGCCTGGACTGCGAGGT
AGGTAGGTAGGAAATGGAGCAAAGCAGCGAAGGGGGGATGGAGTGGAGGG
CTACCGAGAGCAAGAGTTTTTAAGGGGTGGAAGAAGAGAGGCCTGCATAT
TATCGCTTGACCCTTCTCTCCCCCCCCCTCCCTCCCTCCCTCCTCCTCTC
TACCTAAATCTCAAGACGCTCGTAGGCTGGAAGTACGAAGAAGCGTTTGA
GCGAAGCCAAAAATATAAGGAAGGCAAATATATCTTGGAAAGGACGCGGA
TCATCAAGGATCCCGACGAAGGGTGGTAAGGGAAGGAGGAAGGGAAGGAG
GGAGGCAGGGTAGGATGGTGTATATGACGGCGGTCTTGAGAGTATACGAA
GAGGGGAAGCATGTTCCGGAGGCGCTGGCTGACAAGGACCTTGACGGGGG
AG
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Coding sequence (CDS) from alignment at scaffold_11:190931..192032+

>mRNA_5639 ID=mRNA_5639|Name=jgi.p|Nanoce1779_2|589811|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_11:190931..192032+ (Nannochloropsis oceanica)
ATGGGACGCCTCTTCATAAGGTGCTTGGACGGTCCTCAGGTTTGGTGCTG
CTCGCGATGCCAAACGCACTTGTCATCGAATGACCAAATTATAAGCAAGC
AATTTACGGGCCGTGGGGGCCGCGCATTTTTGTTTGACAAAGTGGTGAAC
GTCACCACGGGCCCTCATGAGAAGCGCGTGCTCATCACAGGGCTGCACAC
CGTGGCGGATATATACTGCCTGGACTGCGAGACGCTCGTAGGCTGGAAGT
ACGAAGAAGCGTTTGAGCGAAGCCAAAAATATAAGGAAGGCAAATATATC
TTGGAAAGGACGCGGATCATCAAGGATCCCGACGAAGGGTGGTAAATGGG
ACGCCTCTTCATAAGGTGCTTGGACGGTCCTCAGGTTTGGTGCTGCTCGC
GATGCCAAACGCACTTGTCATCGAATGACCAAATTATAAGCAAGCAATTT
ACGGGCCGTGGGGGCCGCGCATTTTTGTTTGACAAAGTGGTGAACGTCAC
CACGGGCCCTCATGAGAAGCGCGTGCTCATCACAGGGCTGCACACCGTGG
CGGATATATACTGCCTGGACTGCGAGACGCTCGTAGGCTGGAAGTACGAA
GAAGCGTTTGAGCGAAGCCAAAAATATAAGGAAGGCAAATATATCTTGGA
AAGGACGCGGATCATCAAGGATCCCGACGAAGGGTGGTAAATGGGACGCC
TCTTCATAAGGTGCTTGGACGGTCCTCAGGTTTGGTGCTGCTCGCGATGC
CAAACGCACTTGTCATCGAATGACCAAATTATAAGCAAGCAATTTACGGG
CCGTGGGGGCCGCGCATTTTTGTTTGACAAAGTGGTGAACGTCACCACGG
GCCCTCATGAGAAGCGCGTGCTCATCACAGGGCTGCACACCGTGGCGGAT
ATATACTGCCTGGACTGCGAGACGCTCGTAGGCTGGAAGTACGAAGAAGC
GTTTGAGCGAAGCCAAAAATATAAGGAAGGCAAATATATCTTGGAAAGGA
CGCGGATCATCAAGGATCCCGACGAAGGGTGGTAAATGGGACGCCTCTTC
ATAAGGTGCTTGGACGGTCCTCAGGTTTGGTGCTGCTCGCGATGCCAAAC
GCACTTGTCATCGAATGACCAAATTATAAGCAAGCAATTTACGGGCCGTG
GGGGCCGCGCATTTTTGTTTGACAAAGTGGTGAACGTCACCACGGGCCCT
CATGAGAAGCGCGTGCTCATCACAGGGCTGCACACCGTGGCGGATATATA
CTGCCTGGACTGCGAGACGCTCGTAGGCTGGAAGTACGAAGAAGCGTTTG
AGCGAAGCCAAAAATATAAGGAAGGCAAATATATCTTGGAAAGGACGCGG
ATCATCAAGGATCCCGACGAAGGGTGGTAA
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Synonyms
Publications