jgi.p|Nanoce1779_2|589807, mRNA_5638 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589807
Unique NamemRNA_5638
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1411
Alignment locationscaffold_11:189122..190710 -

Link to JBrowse

Properties
Property NameValue
TranscriptId589893
TrackFilteredModels2
ProteinId589807
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:189122..190710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589807gene_5638Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589807mRNA_5638-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5638CDS_5638Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5638 ID=mRNA_5638|Name=jgi.p|Nanoce1779_2|589807|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp
ACAGGCCCTGCCCCGCCCCGCCCGTTTGCTTTCCTTCCCTCTGCAGCCAT
GTCGATCGGGGGCATGTTTTTGGCCCACGAGTTGGGCACTGACCCACAAT
TTCCTTCCTTCTTCGAGGTATTCATGCAAGACCGCATCCACCAAAGCCTC
AAGCCTGCGGTGCGTCACGTCTTCCTCGTCCTGGTCCAACGATGGCCGCA
AGCTCTGGTACTGCTCGATCATTTCGACGAGGTCTTCGCGGTGCTGTCTC
TGTTTTTGGAAAGGCATTACCTGGCCAAGAACGACGCCTTGGTAGCCGAG
TCCCTGTATGGCTTCAAACGATCTCGATACCAACCTCATGAACAAACCCC
TCAGCAACAAAAGCAGCAAAACGCCAGTACCGGCATGAACAGCAATCAGA
ACACAGGAATCAGCTCGGGGGCTATGAGCCCTCTGACACAAATGGATCGG
AGGAAAGCTCTGCTGGTCAATATTTTGGCGCCCTACGCCAAGGCCAAGCT
AGATGCCTTATACACGCATTGGAAAGACGTCCTCCCCCCCCCTCCCTCTC
CTCCTTCGACGACACCCAACAGTAATAATGGGAGAGGGAGACTGCGATCT
CCAGCAAACGGTGAGGAATGTGAGCACGATGACGAGGAGCTGGAGCCATC
CCTTCCCCACCATGAGCCTCTCCCTCTCCGCCTCCGTCGTGCCTTCGTCT
CCATCACCATTTCCCCCAAACCCACTCTCGCCTCCCGCCTTACGCGCTCT
CTCAAAGTCGCATTCGTCGTCGCGATCGTTGCCTTCAAGGTCCTTGAATG
GTGGCTTTCAACCCCAGAGCTCCTTCATTCGTCCCCTCGTCAAAAACGCA
TCATTCCCCCCGTTCCCGACCCCCCCTCCGCCGCTCCCTCCGGAATATCC
TTGCCCAAAGACCAGAATCTCTGTCCTTTGTGTAAGAATGTGAGGGTTAA
TCCAGCTGTGTCCCCTGCGGGCGTGGCTTACTGCTATCGGTGCTTGATTG
CGCATGTCAGGGAGGTTGGCGTGTGTCCTGTGACCTTGCAAGCCTGCCGG
GAGGAACAGGTACGGCGGATATATTTGACTTGAGATGGATGTGTGGATTG
GAAAGAGATCGGCCTCCTGCTTTCCTTGCTCTGGTGGCATGGTGTTGGTG
GTAGTGGTTGTGAAGCTCGAATGCGCACGAGATTAGCGATCGAGGGTTGA
GGGCCTGATAGGAGCACTGAAGATGTGGGTCGGTTGGGTAGTGCTTTGGA
TAGGTGTATGGGTCTTCATGTGCTAGAAATGCGTGTAAATATCGTGATTA
TCAGGTGACTGATTGATTGGCTGTAGAGTCTGCCGCACTCTTTAACCTCC
CCACCGAGTTGTATAGAAACAATGAGGTTGAATGAAACAAAGCAAAACCA
AAGCCCTCGAG
back to top

protein sequence of jgi.p|Nanoce1779_2|589807

>mRNA_5638-protein ID=mRNA_5638-protein|Name=jgi.p|Nanoce1779_2|589807|organism=Nannochloropsis oceanica|type=polypeptide|length=345bp
MSIGGMFLAHELGTDPQFPSFFEVFMQDRIHQSLKPAVRHVFLVLVQRWP
QALVLLDHFDEVFAVLSLFLERHYLAKNDALVAESLYGFKRSRYQPHEQT
PQQQKQQNASTGMNSNQNTGISSGAMSPLTQMDRRKALLVNILAPYAKAK
LDALYTHWKDVLPPPPSPPSTTPNSNNGRGRLRSPANGEECEHDDEELEP
SLPHHEPLPLRLRRAFVSITISPKPTLASRLTRSLKVAFVVAIVAFKVLE
WWLSTPELLHSSPRQKRIIPPVPDPPSAAPSGISLPKDQNLCPLCKNVRV
NPAVSPAGVAYCYRCLIAHVREVGVCPVTLQACREEQVRRIYLT*
back to top

mRNA from alignment at scaffold_11:189122..190710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5638 ID=mRNA_5638|Name=jgi.p|Nanoce1779_2|589807|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at scaffold_11:189122..190710- (Nannochloropsis oceanica)
ACAGGCCCTGCCCCGCCCCGCCCGTTTGCTTTCCTTCCCTCTGCAGCCAT
GTCGATCGGGGGCATGTTTTTGGCCCACGAGTTGGGCACTGACCCACAAT
TTCCTTCCTTCTTCGAGGTATTCATGCAAGACCGCATCCACCAAAGCCTC
AAGCCTGCGGTGCGTCACGTCTTCCTCGTCCTGGTCCAACGATGGCCGCA
AGCTCTGGTACTGCTCGATCATTTCGACGAGGTCTTCGCGGTGCTGTCTC
TGTTTTTGGAAAGGCATTACCTGGCCAAGAACGACGCCTTGGTAGCCGAG
TCCCTGTATGGCTTCAAACGATCTCGATACCAACCTCATGAACAAACCCC
TCAGCAACAAAAGCAGCAAAACGCCAGTACCGGCATGAACAGCAATCAGA
ACACAGGAATCAGCTCGGGGGCTATGAGCCCTCTGACACAAATGGATCGG
AGGAAAGCTCTGCTGGTCAATATTTTGGCGCCCTACGCCAAGGCCAAGCT
AGATGCCTTATACACGCATTGGAAAGACGTCCTCCCCCCCCCTCCCTCTC
CTCCTTCGACGACACCCAACAGTAATAATGGGAGAGGGAGACTGCGATCT
CCAGCAAACGGTGAGGAATGTGAGCACGATGACGAGGAGCTGGAGCCATC
CCTTCCCCACCATGAGCCTCTCCCTCTCCGCCTCCGTCGTGCCTTCGTCT
CCATGTACCCCCCTTCTCCACGCATCCTACGAGGGTTCCTTCTTCGTCTA
CCAATGGGCATACCTTTTTGGTCGCACCAAACACTACTCCCCTCTCCTCC
ACATCCTCGGCGTTGTCCTCCGCCGGCTCACCCACGAAGATCTCCCCTCT
TCCTCACCGTCTTCCTCCTCCTCCCTCTCCAGCACCATTTCCCCCAAACC
CACTCTCGCCTCCCGCCTTACGCGCTCTCTCAAAGTCGCATTCGTCGTCG
CGATCGTTGCCTTCAAGGTCCTTGAATGGTGGCTTTCAACCCCAGAGCTC
CTTCATTCGTCCCCTCGTCAAAAACGCATCATTCCCCCCGTTCCCGACCC
CCCCTCCGCCGCTCCCTCCGGAATATCCTTGCCCAAAGACCAGAATCTCT
GTCCTTTGTGTAAGAATGTGAGGGTTAATCCAGCTGTGTCCCCTGCGGGC
GTGGCTTACTGCTATCGGTGCTTGATTGCGCATGTCAGGGAGGTTGGCGT
GTGTCCTGTGACCTTGCAAGCCTGCCGGGAGGAACAGGTACGGCGGATAT
ATTTGACTTGAGATGGATGTGTGGATTGGAAAGAGATCGGCCTCCTGCTT
TCCTTGCTCTGGTGGCATGGTGTTGGTGGTAGTGGTTGTGAAGCTCGAAT
GCGCACGAGATTAGCGATCGAGGGTTGAGGGCCTGATAGGAGCACTGAAG
ATGTGGGTCGGTTGGGTAGTGCTTTGGATAGGTGTATGGGTCTTCATGTG
CTAGAAATGCGTGTAAATATCGTGATTATCAGGTGACTGATTGATTGGCT
GTAGAGTCTGCCGCACTCTTTAACCTCCCCACCGAGTTGTATAGAAACAA
TGAGGTTGAATGAAACAAAGCAAAACCAAAGCCCTCGAG
back to top

Coding sequence (CDS) from alignment at scaffold_11:189122..190710-

>mRNA_5638 ID=mRNA_5638|Name=jgi.p|Nanoce1779_2|589807|organism=Nannochloropsis oceanica|type=CDS|length=2070bp|location=Sequence derived from alignment at scaffold_11:189122..190710- (Nannochloropsis oceanica)
CACCATTTCCCCCAAACCCACTCTCGCCTCCCGCCTTACGCGCTCTCTCA
AAGTCGCATTCGTCGTCGCGATCGTTGCCTTCAAGGTCCTTGAATGGTGG
CTTTCAACCCCAGAGCTCCTTCATTCGTCCCCTCGTCAAAAACGCATCAT
TCCCCCCGTTCCCGACCCCCCCTCCGCCGCTCCCTCCGGAATATCCTTGC
CCAAAGACCAGAATCTCTGTCCTTTGTGTAAGAATGTGAGGGTTAATCCA
GCTGTGTCCCCTGCGGGCGTGGCTTACTGCTATCGGTGCTTGATTGCGCA
TGTCAGGGAGGTTGGCGTGTGTCCTGTGACCTTGCAAGCCTGCCGGGAGG
AACAGGTACGGCGGATATATTTGACTTGAATGTCGATCGGGGGCATGTTT
TTGGCCCACGAGTTGGGCACTGACCCACAATTTCCTTCCTTCTTCGAGGT
ATTCATGCAAGACCGCATCCACCAAAGCCTCAAGCCTGCGGTGCGTCACG
TCTTCCTCGTCCTGGTCCAACGATGGCCGCAAGCTCTGGTACTGCTCGAT
CATTTCGACGAGGTCTTCGCGGTGCTGTCTCTGTTTTTGGAAAGGCATTA
CCTGGCCAAGAACGACGCCTTGGTAGCCGAGTCCCTGTATGGCTTCAAAC
GATCTCGATACCAACCTCATGAACAAACCCCTCAGCAACAAAAGCAGCAA
AACGCCAGTACCGGCATGAACAGCAATCAGAACACAGGAATCAGCTCGGG
GGCTATGAGCCCTCTGACACAAATGGATCGGAGGAAAGCTCTGCTGGTCA
ATATTTTGGCGCCCTACGCCAAGGCCAAGCTAGATGCCTTATACACGCAT
TGGAAAGACGTCCTCCCCCCCCCTCCCTCTCCTCCTTCGACGACACCCAA
CAGTAATAATGGGAGAGGGAGACTGCGATCTCCAGCAAACGGTGAGGAAT
GTGAGCACGATGACGAGGAGCTGGAGCCATCCCTTCCCCACCATGAGCCT
CTCCCTCTCCGCCTCCGTCGTGCCTTCGTCTCCATCACCATTTCCCCCAA
ACCCACTCTCGCCTCCCGCCTTACGCGCTCTCTCAAAGTCGCATTCGTCG
TCGCGATCGTTGCCTTCAAGGTCCTTGAATGGTGGCTTTCAACCCCAGAG
CTCCTTCATTCGTCCCCTCGTCAAAAACGCATCATTCCCCCCGTTCCCGA
CCCCCCCTCCGCCGCTCCCTCCGGAATATCCTTGCCCAAAGACCAGAATC
TCTGTCCTTTGTGTAAGAATGTGAGGGTTAATCCAGCTGTGTCCCCTGCG
GGCGTGGCTTACTGCTATCGGTGCTTGATTGCGCATGTCAGGGAGGTTGG
CGTGTGTCCTGTGACCTTGCAAGCCTGCCGGGAGGAACAGGTACGGCGGA
TATATTTGACTTGAATGTCGATCGGGGGCATGTTTTTGGCCCACGAGTTG
GGCACTGACCCACAATTTCCTTCCTTCTTCGAGGTATTCATGCAAGACCG
CATCCACCAAAGCCTCAAGCCTGCGGTGCGTCACGTCTTCCTCGTCCTGG
TCCAACGATGGCCGCAAGCTCTGGTACTGCTCGATCATTTCGACGAGGTC
TTCGCGGTGCTGTCTCTGTTTTTGGAAAGGCATTACCTGGCCAAGAACGA
CGCCTTGGTAGCCGAGTCCCTGTATGGCTTCAAACGATCTCGATACCAAC
CTCATGAACAAACCCCTCAGCAACAAAAGCAGCAAAACGCCAGTACCGGC
ATGAACAGCAATCAGAACACAGGAATCAGCTCGGGGGCTATGAGCCCTCT
GACACAAATGGATCGGAGGAAAGCTCTGCTGGTCAATATTTTGGCGCCCT
ACGCCAAGGCCAAGCTAGATGCCTTATACACGCATTGGAAAGACGTCCTC
CCCCCCCCTCCCTCTCCTCCTTCGACGACACCCAACAGTAATAATGGGAG
AGGGAGACTGCGATCTCCAGCAAACGGTGAGGAATGTGAGCACGATGACG
AGGAGCTGGAGCCATCCCTTCCCCACCATGAGCCTCTCCCTCTCCGCCTC
CGTCGTGCCTTCGTCTCCAT
back to top
Synonyms
Publications