jgi.p|Nanoce1779_2|565995, mRNA_5636 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565995
Unique NamemRNA_5636
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length462
Alignment locationscaffold_11:181809..182313 -

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Properties
Property NameValue
TranscriptId566081
TrackFilteredModels2
ProteinId565995
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:181809..182313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565995gene_5636Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565995mRNA_5636-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5636CDS_5636Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5636 ID=mRNA_5636|Name=jgi.p|Nanoce1779_2|565995|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
ATGAATATCTTCGAAGATGGATTTTTGGTTGAAGTGGATGAATTTGAGGG
GGAGGGAGGGAAGGAGGACGGGAGGGTCGGAGAAGTGCTTGGGGAGGAGG
AGGAGGAGGGGGTGGAGGTGTTGGGGGGGGAGGGGCGGACGGGGGAGGGA
GGGAGGGAGGGAGGGGAGGAAGAGGACGAGGGGTCCATAGACTTGGAGTT
GGTATCGTCTGGTTTTCCAGGGAGATTGTTCGGGGGAGGGAGGGAGGGAG
GAAGGGAGGGAATGGTGGGCGATCGACTGCAGAAGATGACGTGGGAGGGA
CTGGAGGAGGTGGAGATGGACCCGTTGGGGTGTGTGGAGGAGGGAGGGAA
GGAGGGAGGGAAGGGGAGAGGGAGGGAGGAAGAAGAGGAGGAGGACGAAG
ATGAGGAGGAGGAGAAGGAGGGGGGACTGGAATTGAAGGAGGAGGAGGGG
CAGGAGGAGTAG
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protein sequence of jgi.p|Nanoce1779_2|565995

>mRNA_5636-protein ID=mRNA_5636-protein|Name=jgi.p|Nanoce1779_2|565995|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MNIFEDGFLVEVDEFEGEGGKEDGRVGEVLGEEEEEGVEVLGGEGRTGEG
GREGGEEEDEGSIDLELVSSGFPGRLFGGGREGGREGMVGDRLQKMTWEG
LEEVEMDPLGCVEEGGKEGGKGRGREEEEEEDEDEEEEKEGGLELKEEEG
QEE*
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mRNA from alignment at scaffold_11:181809..182313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5636 ID=mRNA_5636|Name=jgi.p|Nanoce1779_2|565995|organism=Nannochloropsis oceanica|type=mRNA|length=505bp|location=Sequence derived from alignment at scaffold_11:181809..182313- (Nannochloropsis oceanica)
ATGAATATCTTCGAAGATGGATTTTTGGTTGAAGTGGATGAATTTGAGGG
GGAGGGAGGGAAGGAGGACGGGAGGGTCGGAGAAGTGCTTGGGGAGGAGG
AGGAGGAGGGGGTGGAGGTGTTGGGGGGGGAGGGGCGGACGGGGGAGGGA
GGGAGGGAGGGAGGGGAGGAAGAGGACGAGGGGTCCATAGACTTGGAGTT
GGTATCGTCTGGTTTTCCAGGGAGATTGTTCGGGGGAGGGAGGGAGGGAG
GAAGGGAGGGAATGGTGGGCGATCGACTGCAGAAGATGACGTGGGAGGGA
CTGGAGGAGGTGGAGATGGACCCGTTGGGGTGTGTGGAGGAGGGAGGGAA
GGAGGGAGGGAAGGGGAGAGGGAGGGAGGAAGAAGAGGAGGAGGACGAAG
ATGAGGAGGAGGAGAAGGAGGGGGGAGTGAGGCCGATGGAGGTTGCTCCT
TTCGCTCCTGCTCCTGCAGCTGGAATTGAAGGAGGAGGAGGGGCAGGAGG
AGTAG
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Coding sequence (CDS) from alignment at scaffold_11:181809..182313-

>mRNA_5636 ID=mRNA_5636|Name=jgi.p|Nanoce1779_2|565995|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_11:181809..182313- (Nannochloropsis oceanica)
CTGGAATTGAAGGAGGAGGAGGGGCAGGAGGAGTAGATGAATATCTTCGA
AGATGGATTTTTGGTTGAAGTGGATGAATTTGAGGGGGAGGGAGGGAAGG
AGGACGGGAGGGTCGGAGAAGTGCTTGGGGAGGAGGAGGAGGAGGGGGTG
GAGGTGTTGGGGGGGGAGGGGCGGACGGGGGAGGGAGGGAGGGAGGGAGG
GGAGGAAGAGGACGAGGGGTCCATAGACTTGGAGTTGGTATCGTCTGGTT
TTCCAGGGAGATTGTTCGGGGGAGGGAGGGAGGGAGGAAGGGAGGGAATG
GTGGGCGATCGACTGCAGAAGATGACGTGGGAGGGACTGGAGGAGGTGGA
GATGGACCCGTTGGGGTGTGTGGAGGAGGGAGGGAAGGAGGGAGGGAAGG
GGAGAGGGAGGGAGGAAGAAGAGGAGGAGGACGAAGATGAGGAGGAGGAG
AAGGAGGGGGGACTGGAATTGAAGGAGGAGGAGGGGCAGGAGGAGTAGAT
GAATATCTTCGAAGATGGATTTTTGGTTGAAGTGGATGAATTTGAGGGGG
AGGGAGGGAAGGAGGACGGGAGGGTCGGAGAAGTGCTTGGGGAGGAGGAG
GAGGAGGGGGTGGAGGTGTTGGGGGGGGAGGGGCGGACGGGGGAGGGAGG
GAGGGAGGGAGGGGAGGAAGAGGACGAGGGGTCCATAGACTTGGAGTTGG
TATCGTCTGGTTTTCCAGGGAGATTGTTCGGGGGAGGGAGGGAGGGAGGA
AGGGAGGGAATGGTGGGCGATCGACTGCAGAAGATGACGTGGGAGGGACT
GGAGGAGGTGGAGATGGACCCGTTGGGGTGTGTGGAGGAGGGAGGGAAGG
AGGGAGGGAAGGGGAGAGGGAGGGAGGAAGAAGAGGAGGAGGACGAAGAT
GAGGAGGAGGAGAAGGAGGGGGGA
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Synonyms
Publications