jgi.p|Nanoce1779_2|589802, mRNA_5635 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589802
Unique NamemRNA_5635
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length719
Alignment locationscaffold_11:179287..180005 -

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Properties
Property NameValue
TranscriptId589888
TrackFilteredModels2
ProteinId589802
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:179287..180005 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589802gene_5635Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589802mRNA_5635-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5635CDS_5635Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5635 ID=mRNA_5635|Name=jgi.p|Nanoce1779_2|589802|organism=Nannochloropsis oceanica|type=mRNA|length=719bp
GAGGCCTTGAACGCTTCGGTTGGTTTGACGAAAGTGGTGGCGTCGACGCT
GAACGATTTGGTGACGATCGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGT
TGATCCAGCCTGAACTGCAGCCAAAGGGGATGCGGGAGGGGTTAGAGCAC
GCGTACGATTCCTTGTCGAAGGGGCTGGGGACGGCAGCGCATACGATCAT
TGCGATTCCAATTCAGGAGATGGAGAGGAGTGGGCCGAAGGGGAGTATGA
GAGCGGTAATTCGCGCGCTGCCTATTGCGGTGGTGAAGCCGGTTGTGGGC
GTGTCGGAGGCGCTGTCGATCACGTTGTTGGGAGTGAGGAATAAGCTGGA
CCCGGTGAGTCGGAGGGAGGAGGAGGAGTTATGGCGTGTATAGCTTCGTG
TGCTTGAACGTTCCTGAACGTTCCTTCCTTCACGTATATATATACATGTA
AATATCTATGAATGTAGACACACGTCCGATAAGAAGCAGAAAAGAGATTT
TTTTTTTTGAAAGATCTAGTGTAGCAAAGGTGTGGATTGAAGGAGTAGAC
GGGCAGGCAGGCGGAATAGATAAAAGCAAAGAAACAGAAATGCATTGCAT
GACGTGTGTTTGTGTAAATGAGAATCATTAAACAGGCAGCGATCGACAAG
CTTCTCCCTTGTAAAGACGAAGCAACGAAGAGGAAAGATAATTGAGTTAC
TTATGGGTCAACATGCTAT
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protein sequence of jgi.p|Nanoce1779_2|589802

>mRNA_5635-protein ID=mRNA_5635-protein|Name=jgi.p|Nanoce1779_2|589802|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MREGLEHAYDSLSKGLGTAAHTIIAIPIQEMERSGPKGSMRAVIRALPIA
VVKPVVGVSEALSITLLGVRNKLDPVSRREEEELWRV*
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mRNA from alignment at scaffold_11:179287..180005-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5635 ID=mRNA_5635|Name=jgi.p|Nanoce1779_2|589802|organism=Nannochloropsis oceanica|type=mRNA|length=719bp|location=Sequence derived from alignment at scaffold_11:179287..180005- (Nannochloropsis oceanica)
GAGGCCTTGAACGCTTCGGTTGGTTTGACGAAAGTGGTGGCGTCGACGCT
GAACGATTTGGTGACGATCGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGT
TGATCCAGCCTGAACTGCAGCCAAAGGGGATGCGGGAGGGGTTAGAGCAC
GCGTACGATTCCTTGTCGAAGGGGCTGGGGACGGCAGCGCATACGATCAT
TGCGATTCCAATTCAGGAGATGGAGAGGAGTGGGCCGAAGGGGAGTATGA
GAGCGGTAATTCGCGCGCTGCCTATTGCGGTGGTGAAGCCGGTTGTGGGC
GTGTCGGAGGCGCTGTCGATCACGTTGTTGGGAGTGAGGAATAAGCTGGA
CCCGGTGAGTCGGAGGGAGGAGGAGGAGTTATGGCGTGTATAGCTTCGTG
TGCTTGAACGTTCCTGAACGTTCCTTCCTTCACGTATATATATACATGTA
AATATCTATGAATGTAGACACACGTCCGATAAGAAGCAGAAAAGAGATTT
TTTTTTTTGAAAGATCTAGTGTAGCAAAGGTGTGGATTGAAGGAGTAGAC
GGGCAGGCAGGCGGAATAGATAAAAGCAAAGAAACAGAAATGCATTGCAT
GACGTGTGTTTGTGTAAATGAGAATCATTAAACAGGCAGCGATCGACAAG
CTTCTCCCTTGTAAAGACGAAGCAACGAAGAGGAAAGATAATTGAGTTAC
TTATGGGTCAACATGCTAT
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Coding sequence (CDS) from alignment at scaffold_11:179287..180005-

>mRNA_5635 ID=mRNA_5635|Name=jgi.p|Nanoce1779_2|589802|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_11:179287..180005- (Nannochloropsis oceanica)
ATGCGGGAGGGGTTAGAGCACGCGTACGATTCCTTGTCGAAGGGGCTGGG
GACGGCAGCGCATACGATCATTGCGATTCCAATTCAGGAGATGGAGAGGA
GTGGGCCGAAGGGGAGTATGAGAGCGGTAATTCGCGCGCTGCCTATTGCG
GTGGTGAAGCCGGTTGTGGGCGTGTCGGAGGCGCTGTCGATCACGTTGTT
GGGAGTGAGGAATAAGCTGGACCCGGTGAGTCGGAGGGAGGAGGAGGAGT
TATGGCGTGTATAG
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Synonyms
Publications