jgi.p|Nanoce1779_2|589796, mRNA_5632 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589796
Unique NamemRNA_5632
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length423
Alignment locationscaffold_11:170693..171115 -

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Properties
Property NameValue
TranscriptId589882
TrackFilteredModels2
ProteinId589796
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:170693..171115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589796gene_5632Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589796mRNA_5632-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5632CDS_5632Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5632 ID=mRNA_5632|Name=jgi.p|Nanoce1779_2|589796|organism=Nannochloropsis oceanica|type=mRNA|length=423bp
ACTTGATTGTTTTCGGTGTGTCCACCATACAAAGCATTATATGTGCGACA
ATTTTCTTCATTCTTCTTTCGCATGTTTTGCTTCTCATTATTAATGGCTC
TGCTTCCCCTACCCTATTTCCCTTCACCTCTTCCTCCTTTCGTTCTTGTC
GCGCACGTGTTATCCTCCTCATCTCTCTCCTACTGTGCCACTGCCGCAGA
CCTGCTGCTCCTGCAGAAACCCCCCTTTTCTCTTTCCCTCCTTCTTTCTG
TTCCTCCTTTATTCCCTTTGATTCCTTCTTGCTATATATGCCTCTATATA
TACACACCATAGGATAGGATCCACCTGTGCTCCCTCCCTCCCTCCCTCCC
TCCCTCTTTTCCCGTGACATACCCAAGGGCCCCTCCCACCCATCGCATCA
AAAGGCAGGCAGGGAAAGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|589796

>mRNA_5632-protein ID=mRNA_5632-protein|Name=jgi.p|Nanoce1779_2|589796|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MFCFSLLMALLPLPYFPSPLPPFVLVAHVLSSSSLSYCATAADLLLLQKP
PFSLSLLLSVPPLFPLIPSCYICLYIYTP*
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mRNA from alignment at scaffold_11:170693..171115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5632 ID=mRNA_5632|Name=jgi.p|Nanoce1779_2|589796|organism=Nannochloropsis oceanica|type=mRNA|length=423bp|location=Sequence derived from alignment at scaffold_11:170693..171115- (Nannochloropsis oceanica)
ACTTGATTGTTTTCGGTGTGTCCACCATACAAAGCATTATATGTGCGACA
ATTTTCTTCATTCTTCTTTCGCATGTTTTGCTTCTCATTATTAATGGCTC
TGCTTCCCCTACCCTATTTCCCTTCACCTCTTCCTCCTTTCGTTCTTGTC
GCGCACGTGTTATCCTCCTCATCTCTCTCCTACTGTGCCACTGCCGCAGA
CCTGCTGCTCCTGCAGAAACCCCCCTTTTCTCTTTCCCTCCTTCTTTCTG
TTCCTCCTTTATTCCCTTTGATTCCTTCTTGCTATATATGCCTCTATATA
TACACACCATAGGATAGGATCCACCTGTGCTCCCTCCCTCCCTCCCTCCC
TCCCTCTTTTCCCGTGACATACCCAAGGGCCCCTCCCACCCATCGCATCA
AAAGGCAGGCAGGGAAAGGAGGG
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Coding sequence (CDS) from alignment at scaffold_11:170693..171115-

>mRNA_5632 ID=mRNA_5632|Name=jgi.p|Nanoce1779_2|589796|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_11:170693..171115- (Nannochloropsis oceanica)
ATGTTTTGCTTCTCATTATTAATGGCTCTGCTTCCCCTACCCTATTTCCC
TTCACCTCTTCCTCCTTTCGTTCTTGTCGCGCACGTGTTATCCTCCTCAT
CTCTCTCCTACTGTGCCACTGCCGCAGACCTGCTGCTCCTGCAGAAACCC
CCCTTTTCTCTTTCCCTCCTTCTTTCTGTTCCTCCTTTATTCCCTTTGAT
TCCTTCTTGCTATATATGCCTCTATATATACACACCATAG
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Synonyms
Publications