jgi.p|Nanoce1779_2|589794, mRNA_5631 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589794
Unique Name	mRNA_5631
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	988
Alignment location	scaffold_11:169279..170657 +

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Properties


Property Name	Value
TranscriptId	589880
Track	FilteredModels2
ProteinId	589794

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:169279..170657 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589794	gene_5631	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589794	mRNA_5631-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5631	CDS_5631	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:169279..170657+
coding sequence from alignment at scaffold_11:169279..170657+

mRNA sequence

>mRNA_5631 ID=mRNA_5631|Name=jgi.p|Nanoce1779_2|589794|organism=Nannochloropsis oceanica|type=mRNA|length=988bp
TGCTGCCCCAGCACTGTAGACGACCGGTGTGTGAGCTCCTTTTTTTTTTC
TTGGTGGGTATGTAAACACACCAACCCATCCGTCCGTCCGTCCCTCCCTT
CCTCCCCACGTCCTTCCCTTGCTTCCTCCCTCCCTACATTAGGGCTTTGG
TTTTGGCAAAGGACAGAGCGCGCAGCAAAACGGCACGAACGAGGGTGAGC
AAGGACCGGAGCTGTTGTACTACCACCAGGAGAAGGACTCTACCATTGAC
TCCACCACTCAATTTTTACGGTTTAACACCAAGCCCGCCGGCTCTCAAGC
GCCTCCAGGGATGCGGGTCTTTGATCGCGTGCTGGATTTTCCATGTGTTT
TCAACATAAAGGTGGGGAGGGAGAGGAGGAGGGAGGGAGGGGAGGGAAGC
GAGGGAAGGAGGAAGGAGGATGGGAAACGATTTCGCGCTCTTTTCAACTC
AGTCTTTCCTCCATGTCGTGCCTCTTGTGTATATGTTATAATTCAACCAT
ATCACTATTTTGTTCTATACAAAGAGCTGATAGATCCAATTTATTTATAG
GTAATGGGGGTCATATGCATCTGTAATAATATTTCAGGTATGTTGCTGAT
TGATACGTACGTACGCCATGTTTTCTATATACATAGGTGATAGGTCAGCC
GGCGGAAAATGATGCAGGCAGCTTTGATAGGGACATGGTGGAGCTCGTGG
GCCAGGTCACCGGCGCCCCTCCCTCTGACATTGTGTACTCTTCTCGTGAC
ACCAGCAGTGGCAAATACCGCAGCCTCACTATCCATGCCCCGGTCAAGAG
CGCTGATGAACTTTATGAGATCTACGAAAAAGTCGATTTAGACCCTAGGG
TAAAGTTTAAGTTCTGAACAAGACTGCTTCGTCGTATCCCTCCCTCCCTC
CCTCCCTCCTTCCCTCCCTAATTGAACAAAATTGTGACTGATCGTCAAAT
TGGATTTTTTAAAGGGCTCTCTTTCGTTTCCTTCGGGG

protein sequence of jgi.p|Nanoce1779_2|589794

>mRNA_5631-protein ID=mRNA_5631-protein|Name=jgi.p|Nanoce1779_2|589794|organism=Nannochloropsis oceanica|type=polypeptide|length=61bp
MVELVGQVTGAPPSDIVYSSRDTSSGKYRSLTIHAPVKSADELYEIYEKV
DLDPRVKFKF*

mRNA from alignment at scaffold_11:169279..170657+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5631 ID=mRNA_5631|Name=jgi.p|Nanoce1779_2|589794|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp|location=Sequence derived from alignment at scaffold_11:169279..170657+ (Nannochloropsis oceanica)
TGCTGCCCCAGCACTGTAGACGACCGGTGTGTGAGCTCCTTTTTTTTTTC
TTGGTGGGTATGTAAACACACCAACCCATCCGTCCGTCCGTCCCTCCCTT
CCTCCCCACGTCCTTCCCTTGCTTCCTCCCTCCCTACATTAGGGCTTTGG
TTTTGGCAAAGGACAGAGCGCGCAGCAAAACGGCACGAACGAGGGTGAGC
AAGGACCGGAGCTGTTGTACTACCACCAGGAGAAGGTGAGGGACGGAGAG
AGGAAGGGAGGGAGAATGATCGGAAGCAACGATTAGGAGTATGGATAGGG
GCTGCATGACTATCGATTGAATGAGAGGAAATGGAGGATATGCATTGAAA
AGGAAGAAGGAGGAAAAGAAATGAGATAAAGACTGATTTATAATCAAAAT
CACACGCAGGGATAAATCGTACACTCAACCCTCCCTCCCTCCCTCCCTAC
TCCCTCCCTCCCTCTCTCAGGACTCTACCATTGACTCCACCACTCAATTT
TTACGGTTTAACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGGGATGCG
GGTCTTTGATCGCGTGCTGGATTTTCCATGTGTTTTCAACATAAAGGTGG
GGAGGGAGAGGAGGAGGGAGGGAGGGGAGGGAAGCGAGGGAAGGAGGAAG
GAGGATGGGAAACGATTTCGCGCTCTTTTCAACTCAGTCTTTCCTCCATG
TCGTGCCTCTTGTGTATATGTTATAATTCAACCATATCACTATTTTGTTC
TATACAAAGAGCTGATAGATCCAATTTATTTATAGGTAATGGGGGTCATA
TGCATCTGTAATAATATTTCAGGTATGTTGCTGATTGATACGTACGTACG
CCATGTTTTCTATATACATAGGTGATAGGTCAGCCGGCGGAAAATGATGC
AGGCAGCTTTGATAGGGACATGGTGGAGCTCGTGGGCCAGGTACGATATC
GGCGCCGGATTTATTTTCAATTACATTTTTTTTTCTCTAATATAAATTGA
TAACGAACGCTATTTGCATCGCCCATTCCTCCCAAGACACCAGCAGTGGA
AAATACTATAGCCTTACCATCCTCCCTTCCCTCCCTCCCTGCCTAGGTCA
CCGGCGCCCCTCCCTCTGACATTGTGTACTCTTCTCGTGACACCAGCAGT
GGCAAATACCGCAGCCTCACTATCCATGCCCCGGTCAAGAGCGCTGATGA
ACTTTATGAGATCTACGAAAAAGTCGATTTAGACCCTAGGGTAAAGTTTA
AGTTCTGAACAAGACTGCTTCGTCGTATCCCTCCCTCCCTCCCTCCCTCC
TTCCCTCCCTAATTGAACAAAATTGTGACTGATCGTCAAATTGGATTTTT
TAAAGGGCTCTCTTTCGTTTCCTTCGGGG

Coding sequence (CDS) from alignment at scaffold_11:169279..170657+

>mRNA_5631 ID=mRNA_5631|Name=jgi.p|Nanoce1779_2|589794|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_11:169279..170657+ (Nannochloropsis oceanica)
ATGGTGGAGCTCGTGGGCCAGGTCACCGGCGCCCCTCCCTCTGACATTGT
GTACTCTTCTCGTGACACCAGCAGTGGCAAATACCGCAGCCTCACTATCC
ATGCCCCGGTCAAGAGCGCTGATGAACTTTATGAGATCTACGAAAAAGTC
GATTTAGACCCTAGGGTAAAGTTTAAGTTCTGAATGGTGGAGCTCGTGGG
CCAGGTCACCGGCGCCCCTCCCTCTGACATTGTGTACTCTTCTCGTGACA
CCAGCAGTGGCAAATACCGCAGCCTCACTATCCATGCCCCGGTCAAGAGC
GCTGATGAACTTTATGAGATCTACGAAAAAGTCGATTTAGACCCTAGGGT
AAAGTTTAAGTTCTGA

Synonyms

Publications