jgi.p|Nanoce1779_2|32862, mRNA_5630 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|32862
Unique NamemRNA_5630
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length671
Alignment locationscaffold_11:168823..170100 +

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Properties
Property NameValue
TranscriptId32948
TrackFilteredModels2
ProteinId32862
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:168823..170100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32862gene_5630Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32862mRNA_5630-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5630CDS_5630Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5630 ID=mRNA_5630|Name=jgi.p|Nanoce1779_2|32862|organism=Nannochloropsis oceanica|type=mRNA|length=671bp
TGATTTTGTGACGGCGCGGCGTGCCTCGTGCGTGGACTTGCACTTTGCTC
GCTTCTACATCCACAGCCATTTACACTTACATCTTTAAATTGCATTACAC
AGACCCACCAACGCATCAGCAATGATTCCAAGGGCTCCCGCCACTAGCGC
CAGCCCTCAATCACTATCTCTTCTCGTCCTCCTCCTCGCCCTCCTTCACA
CTACCATCACCACGGCCTTTCTCCTCCCTCATCCCTCCACCAGCCCCACT
CGTCAGCAGCAGGTGTCGCTCTCATCCTTGTCTCCTTTCCCCTTGCGGAA
AGCCTCGCTGGCGGCCAAGGACTCTACCATTGACTCCACCACTCAATTTT
TACGGTTTAACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGGGATGCGG
GTCTTTGATCGCGTGCTGGATTTTCCATGTGTTTTCAACATAAAGGTGGG
GAGGGAGAGGAGGAGGGAGGGAGGGGAGGGAAGCGAGGGAAGGAGGAAGG
AGGATGGGAAACGATTTCGCGCTCTTTTCAACTCAGTCTTTCCTCCATGT
CGTGCCTCTTGTGTATATGTTATAATTCAACCATATCACTATTTTGTTCT
ATACAAAGAGCTGATAGATCCAATTTATTTATAGGTAATGGGGGTCATAT
GCATCTGTAATAATATTTCAG
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protein sequence of jgi.p|Nanoce1779_2|32862

>mRNA_5630-protein ID=mRNA_5630-protein|Name=jgi.p|Nanoce1779_2|32862|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MIPRAPATSASPQSLSLLVLLLALLHTTITTAFLLPHPSTSPTRQQQVSL
SSLSPFPLRKASLAAKDSTIDSTTQFLRFNTKPAGSQAPPGMRVFDRVLD
FPCVFNIKVGRERRREGGEGSEGRRKEDGKRFRALFNSVFPPCRASCVYV
IIQPYHYFVLYKELIDPIYL*
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mRNA from alignment at scaffold_11:168823..170100+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5630 ID=mRNA_5630|Name=jgi.p|Nanoce1779_2|32862|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at scaffold_11:168823..170100+ (Nannochloropsis oceanica)
TGATTTTGTGACGGCGCGGCGTGCCTCGTGCGTGGACTTGCACTTTGCTC
GCTTCTACATCCACAGCCATTTACACTTACATCTTTAAATTGCATTACAC
AGACCCACCAACGCATCAGCAATGATTCCAAGGGCTCCCGCCACTAGCGC
CAGCCCTCAATCACTATCTCTTCTCGTCCTCCTCCTCGCCCTCCTTCACA
CTACCATCACCACGGCCTTTCTCCTCCCTCATCCCTCCACCAGCCCCACT
CGTCAGCAGCAGGTGTCGCTCTCATCCTTGTCTCCTTTCCCCTTGCGGAA
AGCCTCGCTGGCGGCCAAGGTACGTTCGTTTTTACTATAATTCCCTTGCC
CCCCCTCCCGCCCCCCCCCCCCCCCCCCCTCCCTCGTCCCTTCCTTCCTG
GCTCCCTCCCATCTTCACCCTTGCGTGTGCTGTCCCTTTCACACCTCTCT
GATGAATGCTGCCCCAGCACTGTAGACGACCGGTGTGTGAGCTCCTTTTT
TTTTTCTTGGTGGGTATGTAAACACACCAACCCATCCGTCCGTCCGTCCC
TCCCTTCCTCCCCACGTCCTTCCCTTGCTTCCTCCCTCCCTACATTAGGG
CTTTGGTTTTGGCAAAGGACAGAGCGCGCAGCAAAACGGCACGAACGAGG
GTGAGCAAGGACCGGAGCTGTTGTACTACCACCAGGAGAAGGTGAGGGAC
GGAGAGAGGAAGGGAGGGAGAATGATCGGAAGCAACGATTAGGAGTATGG
ATAGGGGCTGCATGACTATCGATTGAATGAGAGGAAATGGAGGATATGCA
TTGAAAAGGAAGAAGGAGGAAAAGAAATGAGATAAAGACTGATTTATAAT
CAAAATCACACGCAGGGATAAATCGTACACTCAACCCTCCCTCCCTCCCT
CCCTACTCCCTCCCTCCCTCTCTCAGGACTCTACCATTGACTCCACCACT
CAATTTTTACGGTTTAACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGG
GATGCGGGTCTTTGATCGCGTGCTGGATTTTCCATGTGTTTTCAACATAA
AGGTGGGGAGGGAGAGGAGGAGGGAGGGAGGGGAGGGAAGCGAGGGAAGG
AGGAAGGAGGATGGGAAACGATTTCGCGCTCTTTTCAACTCAGTCTTTCC
TCCATGTCGTGCCTCTTGTGTATATGTTATAATTCAACCATATCACTATT
TTGTTCTATACAAAGAGCTGATAGATCCAATTTATTTATAGGTAATGGGG
GTCATATGCATCTGTAATAATATTTCAG
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Coding sequence (CDS) from alignment at scaffold_11:168823..170100+

>mRNA_5630 ID=mRNA_5630|Name=jgi.p|Nanoce1779_2|32862|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_11:168823..170100+ (Nannochloropsis oceanica)
ATGATTCCAAGGGCTCCCGCCACTAGCGCCAGCCCTCAATCACTATCTCT
TCTCGTCCTCCTCCTCGCCCTCCTTCACACTACCATCACCACGGCCTTTC
TCCTCCCTCATCCCTCCACCAGCCCCACTCGTCAGCAGCAGGTGTCGCTC
TCATCCTTGTCTCCTTTCCCCTTGCGGAAAGCCTCGCTGGCGGCCAAGGA
CTCTACCATTGACTCCACCACTCAATTTTTACGGTTTAACACCAAGCCCG
CCGGCTCTCAAGCGCCTCCAGGGATGCGGGTCTTTGATCGCGTGCTGGAT
TTTCCATGTGTTTTCAACATAAAGGTGGGGAGGGAGAGGAGGAGGGAGGG
AGGGGAGGGAAGCGAGGGAAGGAGGAAGGAGGATGGGAAACGATTTCGCG
CTCTTTTCAACTCAGTCTTTCCTCCATGTCGTGCCTCTTGTGTATATGTT
ATAATTCAACCATATCACTATTTTGTTCTATACAAAGAGCTGATAGATCC
AATTTATTTATAGATGATTCCAAGGGCTCCCGCCACTAGCGCCAGCCCTC
AATCACTATCTCTTCTCGTCCTCCTCCTCGCCCTCCTTCACACTACCATC
ACCACGGCCTTTCTCCTCCCTCATCCCTCCACCAGCCCCACTCGTCAGCA
GCAGGTGTCGCTCTCATCCTTGTCTCCTTTCCCCTTGCGGAAAGCCTCGC
TGGCGGCCAAGGACTCTACCATTGACTCCACCACTCAATTTTTACGGTTT
AACACCAAGCCCGCCGGCTCTCAAGCGCCTCCAGGGATGCGGGTCTTTGA
TCGCGTGCTGGATTTTCCATGTGTTTTCAACATAAAGGTGGGGAGGGAGA
GGAGGAGGGAGGGAGGGGAGGGAAGCGAGGGAAGGAGGAAGGAGGATGGG
AAACGATTTCGCGCTCTTTTCAACTCAGTCTTTCCTCCATGTCGTGCCTC
TTGTGTATATGTTATAATTCAACCATATCACTATTTTGTTCTATACAAAG
AGCTGATAGATCCAATTTATTTATAG
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Synonyms
Publications