Properties
| Property Name | Value |
|---|
| TranscriptId | 671012 |
| Track | FilteredModels2 |
| ProteinId | 670926 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:166331..168487 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5628 ID=mRNA_5628|Name=jgi.p|Nanoce1779_2|670926|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
ATGGCAGGCAAGCAAAAAGTCGCCCAAGCCATCAAGCTCGCCTGTGAAGA
TGTGGGTTTCTTCATCATCACACACCACGGCGTCCCTCCCTCCATTATCC
ACAATGCGTGGGCGGCAGCCACCGAGTTTTTCGACCTGCCTACGGAGGAA
AAGGAAAAATCGGTCAAGATGGAGGGGAGCCAATACCCTTACGGCTACTC
TGGCTTTGGCGGCGAAGTCCTCTCTCACAGCAAGGCCTATGAACATGCCC
ACCACTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCTTCCTCCCTCCCTT
CCTGACCCCAAAGAGTCCTTCTCCATCGGTCCCTCTGACCCTGCTTCCGG
CATGCCGGCCGTTAGATGGCCACCCTCGCCCCCCTCCTTCGCGCCCGCCA
TCGCCGCCTACTATCAGGCCATGGAAACCCTCTCCTCCTCCCTCTTGGAG
CTGGGCTTGGAAGTCCTGCGGAGGAGGGAGGGAGAGAGGGAGGGAGGGGG
GGAATGGGTGGCGGTTCCGGAGGTGGGGGATTCCTTTGTGGTTAATTTGG
GCGATCTGATGGGGAGGTGGACGAACGACTGGTGGGTCTCGACGATGCAT
AGAGTAGTGGAGGAGGGAGAGGGGGAGGGAGGGGGGAAGAGGAGGCAGGC
CATGGCGTTTTTTTGCAATTTGCCGGCGAGAGTGATGGTGGAGTGCTTGG
AGACGTGCCGGAGGGAGGGGGAGGCGGAACCGAGGCACAAGCCGATTAAT
GCAATGGAGTTTTTGCTTCAAAAACATCATGCGGCGACAGGCGTGGAAAA
GAAGGAGTAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGAGGAAGCGTG
TGTGTGGCACACTCGACTGCAGGTTTTGCTGAGGAATGAATGTCATGAAC
AGATAGAGATGTAAATCAATCAAATACTCCAAGCACTGCCAGTACGAGAA
ACATCCAGCCCCTCGACGTGTGAGTGTGTGTGACGTGACGTTATTGTTCT
TATTGTGTTAGAAAGGTCGTCAGGGGTGGGGCAAATGAGGCCTGGAAACT
CCCATTCTCCTTCTCTCCTCTGATATGTGGCAATAGCGGTGGCTGTTGTT
TTCGTTTCGATTGCCGTACGTGTGGTGATGGAGGTGGTAGTCGACATTGT
GGTACTTGTCATTCCTCTCGTTAACGTTGTTGTTGCTGTGGTCATTTTTT
TCTCATCTACAGTGAGTCAGGTGGCTATTGTTGTTTTGCTTTACGTCGTT
CATTCTATTATACATACACATCCTCTTCCTCTCTTCCTCTCTTCATCCTC
TTCCCCTCCCCTCTCCTCTCCTTGTGCCCTCCCTTTGCCTTCCCCCC back to topprotein sequence of jgi.p|Nanoce1779_2|670926 >mRNA_5628-protein ID=mRNA_5628-protein|Name=jgi.p|Nanoce1779_2|670926|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MAGKQKVAQAIKLACEDVGFFIITHHGVPPSIIHNAWAAATEFFDLPTEE
KEKSVKMEGSQYPYGYSGFGGEVLSHSKAYEHAHHSSSSSSSSSSLPPSL
PDPKESFSIGPSDPASGMPAVRWPPSPPSFAPAIAAYYQAMETLSSSLLE
LGLEVLRRREGEREGGGEWVAVPEVGDSFVVNLGDLMGRWTNDWWVSTMH
RVVEEGEGEGGGKRRQAMAFFCNLPARVMVECLETCRREGEAEPRHKPIN
AMEFLLQKHHAATGVEKKE* back to topmRNA from alignment at scaffold_11:166331..168487- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5628 ID=mRNA_5628|Name=jgi.p|Nanoce1779_2|670926|organism=Nannochloropsis oceanica|type=mRNA|length=2157bp|location=Sequence derived from alignment at scaffold_11:166331..168487- (Nannochloropsis oceanica)
ATGGCAGGCAAGCAAAAAGTCGCCCAAGCCATCAAGCTGTACGTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
TCCTCCTACCTGGTACTACCCTTGCATCCTCCCTCCTCTCCCTCCCTTCC
TCCCTCTCTCAGCGCCTGTGAAGATGTGGGTTTCTTCATCATCACACACC
ACGGCGTCCCTCCCTCCATTATCCACAATGCGTGGGCGGCAGCCACCGAG
TTTTTCGACCTGCCTACGGAGGAAAAGGAAAAATCGGTCAAGATGGAGGG
GAGCCAATACCCTTACGGTAAGAACGAGGGCAGGAAGCAGGGAGGGAGGG
AGATAGGAAGGGAGGGATATTTATCAATTGATTTACTCACGATTCTTTAA
GTTACTCACTATTCCCTAATTTATCACAACTCCCCATCTCTTCCTCCCTC
CCTCCCTCCCTCCTTCCCTCAGGCTACTCTGGCTTTGGCGGCGAAGTCCT
CTCTCACAGCAAGGCCTATGAACATGCCCACCACTCCTCCTCCTCCTCCT
CCTCCTCCTCTTCCCTTCCTCCCTCCCTTCCTGACCCCAAAGAGTCCTTC
TCCATCGGTCCCTCTGACCCTGCTTCCGGCATGCCGGCCGTTAGATGGCC
ACCCTCGCCCCCCTCCTTCGCGCCCGCCATCGCCGCCTACTATCAGGTAC
CCTCGCTTCCTCCCTCCCTTCCTCATTCCTTCCTCCCCTCCCTCCCTCCC
TCTCTCCCTCCCTCCCACCTTTCTTTTTATCCCCCCGCTTTTCCCTCCCT
CCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTTCCTTCCTTCCTTCCTTC
CTCCCTCTTTCTCCGGCTGTTTGTCGCAATCCATTCGTTCCATCCCTTCC
CTTTTCACCCTCCCTACTTCCCTCCTTCCTCCCTCCCTTCCTCGTTCCCT
CCAGGCCATGGAAACCCTCTCCTCCTCCCTCTTGGAGCTGTTTGCCCTCG
CCCTCTCCCTCCCACCTTCCTTCTTCACCTCCCTCATGATCGGCCACTGC
TCTGCCCTCCGCCTCCTCAACTACCCCCCCCCTCCCTCCCTCCTTCCCTC
CCTCCCTCCGCGCCTCCCCGCACACGGACTATGGGATCTTGACCCTCCTG
CGCTCGGGCGGGAGGGGCTTGGAAGTCCTGCGGAGGAGGGAGGGAGAGAG
GGAGGGAGGGGGGGAATGGGTGGCGGTTCCGGAGGTGGGGGATTCCTTTG
TGGTTAATTTGGGCGATCTGATGGGGAGGTGGACGAACGACTGGTGGGTC
TCGACGATGCATAGAGTAGTGGAGGAGGGAGAGGGGGAGGGAGGGGGGAA
GAGGAGGCAGGCCATGGCGTTTTTTTGCAATTTGCCGGCGAGAGTGATGG
TGGAGTGCTTGGAGACGTGCCGGAGGGAGGGGGAGGCGGAACCGAGGTAG
GAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTGGGACAAAC
ATCTTGTTGTACATGGTCTGATTCACACGCACCCACCGCGATAGGCACAA
GCCGATTAATGCAATGGAGTTTTTGCTTCAAAAACATCATGCGGCGACAG
GCGTGGAAAAGAAGGAGTAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGG
AGGAAGCGTGTGTGTGGCACACTCGACTGCAGGTTTTGCTGAGGAATGAA
TGTCATGAACAGATAGAGATGTAAATCAATCAAATACTCCAAGCACTGCC
AGTACGAGAAACATCCAGCCCCTCGACGTGTGAGTGTGTGTGACGTGACG
TTATTGTTCTTATTGTGTTAGAAAGGTCGTCAGGGGTGGGGCAAATGAGG
CCTGGAAACTCCCATTCTCCTTCTCTCCTCTGATATGTGGCAATAGCGGT
GGCTGTTGTTTTCGTTTCGATTGCCGTACGTGTGGTGATGGAGGTGGTAG
TCGACATTGTGGTACTTGTCATTCCTCTCGTTAACGTTGTTGTTGCTGTG
GTCATTTTTTTCTCATCTACAGTGAGTCAGGTGGCTATTGTTGTTTTGCT
TTACGTCGTTCATTCTATTATACATACACATCCTCTTCCTCTCTTCCTCT
CTTCATCCTCTTCCCCTCCCCTCTCCTCTCCTTGTGCCCTCCCTTTGCCT
TCCCCCC back to topCoding sequence (CDS) from alignment at scaffold_11:166331..168487- >mRNA_5628 ID=mRNA_5628|Name=jgi.p|Nanoce1779_2|670926|organism=Nannochloropsis oceanica|type=CDS|length=4860bp|location=Sequence derived from alignment at scaffold_11:166331..168487- (Nannochloropsis oceanica)
GCACAAGCCGATTAATGCAATGGAGTTTTTGCTTCAAAAACATCATGCGG
CGACAGGCGTGGAAAAGAAGGAGTAGGGGCTTGGAAGTCCTGCGGAGGAG
GGAGGGAGAGAGGGAGGGAGGGGGGGAATGGGTGGCGGTTCCGGAGGTGG
GGGATTCCTTTGTGGTTAATTTGGGCGATCTGATGGGGAGGTGGACGAAC
GACTGGTGGGTCTCGACGATGCATAGAGTAGTGGAGGAGGGAGAGGGGGA
GGGAGGGGGGAAGAGGAGGCAGGCCATGGCGTTTTTTTGCAATTTGCCGG
CGAGAGTGATGGTGGAGTGCTTGGAGACGTGCCGGAGGGAGGGGGAGGCG
GAACCGAGGCCATGGAAACCCTCTCCTCCTCCCTCTTGGAGCTGCTACTC
TGGCTTTGGCGGCGAAGTCCTCTCTCACAGCAAGGCCTATGAACATGCCC
ACCACTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCTTCCTCCCTCCCTT
CCTGACCCCAAAGAGTCCTTCTCCATCGGTCCCTCTGACCCTGCTTCCGG
CATGCCGGCCGTTAGATGGCCACCCTCGCCCCCCTCCTTCGCGCCCGCCA
TCGCCGCCTACTATCAGCGCCTGTGAAGATGTGGGTTTCTTCATCATCAC
ACACCACGGCGTCCCTCCCTCCATTATCCACAATGCGTGGGCGGCAGCCA
CCGAGTTTTTCGACCTGCCTACGGAGGAAAAGGAAAAATCGGTCAAGATG
GAGGGGAGCCAATACCCTTACGATGGCAGGCAAGCAAAAAGTCGCCCAAG
CCATCAAGCTGCACAAGCCGATTAATGCAATGGAGTTTTTGCTTCAAAAA
CATCATGCGGCGACAGGCGTGGAAAAGAAGGAGTAGGGGCTTGGAAGTCC
TGCGGAGGAGGGAGGGAGAGAGGGAGGGAGGGGGGGAATGGGTGGCGGTT
CCGGAGGTGGGGGATTCCTTTGTGGTTAATTTGGGCGATCTGATGGGGAG
GTGGACGAACGACTGGTGGGTCTCGACGATGCATAGAGTAGTGGAGGAGG
GAGAGGGGGAGGGAGGGGGGAAGAGGAGGCAGGCCATGGCGTTTTTTTGC
AATTTGCCGGCGAGAGTGATGGTGGAGTGCTTGGAGACGTGCCGGAGGGA
GGGGGAGGCGGAACCGAGGCCATGGAAACCCTCTCCTCCTCCCTCTTGGA
GCTGCTACTCTGGCTTTGGCGGCGAAGTCCTCTCTCACAGCAAGGCCTAT
GAACATGCCCACCACTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCTTCC
TCCCTCCCTTCCTGACCCCAAAGAGTCCTTCTCCATCGGTCCCTCTGACC
CTGCTTCCGGCATGCCGGCCGTTAGATGGCCACCCTCGCCCCCCTCCTTC
GCGCCCGCCATCGCCGCCTACTATCAGCGCCTGTGAAGATGTGGGTTTCT
TCATCATCACACACCACGGCGTCCCTCCCTCCATTATCCACAATGCGTGG
GCGGCAGCCACCGAGTTTTTCGACCTGCCTACGGAGGAAAAGGAAAAATC
GGTCAAGATGGAGGGGAGCCAATACCCTTACGATGGCAGGCAAGCAAAAA
GTCGCCCAAGCCATCAAGCTGCACAAGCCGATTAATGCAATGGAGTTTTT
GCTTCAAAAACATCATGCGGCGACAGGCGTGGAAAAGAAGGAGTAGGGGC
TTGGAAGTCCTGCGGAGGAGGGAGGGAGAGAGGGAGGGAGGGGGGGAATG
GGTGGCGGTTCCGGAGGTGGGGGATTCCTTTGTGGTTAATTTGGGCGATC
TGATGGGGAGGTGGACGAACGACTGGTGGGTCTCGACGATGCATAGAGTA
GTGGAGGAGGGAGAGGGGGAGGGAGGGGGGAAGAGGAGGCAGGCCATGGC
GTTTTTTTGCAATTTGCCGGCGAGAGTGATGGTGGAGTGCTTGGAGACGT
GCCGGAGGGAGGGGGAGGCGGAACCGAGGCCATGGAAACCCTCTCCTCCT
CCCTCTTGGAGCTGCTACTCTGGCTTTGGCGGCGAAGTCCTCTCTCACAG
CAAGGCCTATGAACATGCCCACCACTCCTCCTCCTCCTCCTCCTCCTCCT
CTTCCCTTCCTCCCTCCCTTCCTGACCCCAAAGAGTCCTTCTCCATCGGT
CCCTCTGACCCTGCTTCCGGCATGCCGGCCGTTAGATGGCCACCCTCGCC
CCCCTCCTTCGCGCCCGCCATCGCCGCCTACTATCAGCGCCTGTGAAGAT
GTGGGTTTCTTCATCATCACACACCACGGCGTCCCTCCCTCCATTATCCA
CAATGCGTGGGCGGCAGCCACCGAGTTTTTCGACCTGCCTACGGAGGAAA
AGGAAAAATCGGTCAAGATGGAGGGGAGCCAATACCCTTACGATGGCAGG
CAAGCAAAAAGTCGCCCAAGCCATCAAGCTGCACAAGCCGATTAATGCAA
TGGAGTTTTTGCTTCAAAAACATCATGCGGCGACAGGCGTGGAAAAGAAG
GAGTAGGGGCTTGGAAGTCCTGCGGAGGAGGGAGGGAGAGAGGGAGGGAG
GGGGGGAATGGGTGGCGGTTCCGGAGGTGGGGGATTCCTTTGTGGTTAAT
TTGGGCGATCTGATGGGGAGGTGGACGAACGACTGGTGGGTCTCGACGAT
GCATAGAGTAGTGGAGGAGGGAGAGGGGGAGGGAGGGGGGAAGAGGAGGC
AGGCCATGGCGTTTTTTTGCAATTTGCCGGCGAGAGTGATGGTGGAGTGC
TTGGAGACGTGCCGGAGGGAGGGGGAGGCGGAACCGAGGCCATGGAAACC
CTCTCCTCCTCCCTCTTGGAGCTGCTACTCTGGCTTTGGCGGCGAAGTCC
TCTCTCACAGCAAGGCCTATGAACATGCCCACCACTCCTCCTCCTCCTCC
TCCTCCTCCTCTTCCCTTCCTCCCTCCCTTCCTGACCCCAAAGAGTCCTT
CTCCATCGGTCCCTCTGACCCTGCTTCCGGCATGCCGGCCGTTAGATGGC
CACCCTCGCCCCCCTCCTTCGCGCCCGCCATCGCCGCCTACTATCAGCGC
CTGTGAAGATGTGGGTTTCTTCATCATCACACACCACGGCGTCCCTCCCT
CCATTATCCACAATGCGTGGGCGGCAGCCACCGAGTTTTTCGACCTGCCT
ACGGAGGAAAAGGAAAAATCGGTCAAGATGGAGGGGAGCCAATACCCTTA
CGATGGCAGGCAAGCAAAAAGTCGCCCAAGCCATCAAGCTGCACAAGCCG
ATTAATGCAATGGAGTTTTTGCTTCAAAAACATCATGCGGCGACAGGCGT
GGAAAAGAAGGAGTAGGGGCTTGGAAGTCCTGCGGAGGAGGGAGGGAGAG
AGGGAGGGAGGGGGGGAATGGGTGGCGGTTCCGGAGGTGGGGGATTCCTT
TGTGGTTAATTTGGGCGATCTGATGGGGAGGTGGACGAACGACTGGTGGG
TCTCGACGATGCATAGAGTAGTGGAGGAGGGAGAGGGGGAGGGAGGGGGG
AAGAGGAGGCAGGCCATGGCGTTTTTTTGCAATTTGCCGGCGAGAGTGAT
GGTGGAGTGCTTGGAGACGTGCCGGAGGGAGGGGGAGGCGGAACCGAGGC
CATGGAAACCCTCTCCTCCTCCCTCTTGGAGCTGCTACTCTGGCTTTGGC
GGCGAAGTCCTCTCTCACAGCAAGGCCTATGAACATGCCCACCACTCCTC
CTCCTCCTCCTCCTCCTCCTCTTCCCTTCCTCCCTCCCTTCCTGACCCCA
AAGAGTCCTTCTCCATCGGTCCCTCTGACCCTGCTTCCGGCATGCCGGCC
GTTAGATGGCCACCCTCGCCCCCCTCCTTCGCGCCCGCCATCGCCGCCTA
CTATCAGCGCCTGTGAAGATGTGGGTTTCTTCATCATCACACACCACGGC
GTCCCTCCCTCCATTATCCACAATGCGTGGGCGGCAGCCACCGAGTTTTT
CGACCTGCCTACGGAGGAAAAGGAAAAATCGGTCAAGATGGAGGGGAGCC
AATACCCTTACGATGGCAGGCAAGCAAAAAGTCGCCCAAGCCATCAAGCT
GCACAAGCCGATTAATGCAATGGAGTTTTTGCTTCAAAAACATCATGCGG
CGACAGGCGTGGAAAAGAAGGAGTAGGGGCTTGGAAGTCCTGCGGAGGAG
GGAGGGAGAGAGGGAGGGAGGGGGGGAATGGGTGGCGGTTCCGGAGGTGG
GGGATTCCTTTGTGGTTAATTTGGGCGATCTGATGGGGAGGTGGACGAAC
GACTGGTGGGTCTCGACGATGCATAGAGTAGTGGAGGAGGGAGAGGGGGA
GGGAGGGGGGAAGAGGAGGCAGGCCATGGCGTTTTTTTGCAATTTGCCGG
CGAGAGTGATGGTGGAGTGCTTGGAGACGTGCCGGAGGGAGGGGGAGGCG
GAACCGAGGCCATGGAAACCCTCTCCTCCTCCCTCTTGGAGCTGCTACTC
TGGCTTTGGCGGCGAAGTCCTCTCTCACAGCAAGGCCTATGAACATGCCC
ACCACTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCCTTCCTCCCTCCCTT
CCTGACCCCAAAGAGTCCTTCTCCATCGGTCCCTCTGACCCTGCTTCCGG
CATGCCGGCCGTTAGATGGCCACCCTCGCCCCCCTCCTTCGCGCCCGCCA
TCGCCGCCTACTATCAGCGCCTGTGAAGATGTGGGTTTCTTCATCATCAC
ACACCACGGCGTCCCTCCCTCCATTATCCACAATGCGTGGGCGGCAGCCA
CCGAGTTTTTCGACCTGCCTACGGAGGAAAAGGAAAAATCGGTCAAGATG
GAGGGGAGCCAATACCCTTACGATGGCAGGCAAGCAAAAAGTCGCCCAAG
CCATCAAGCT back to top
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