jgi.p|Nanoce1779_2|589779, mRNA_5625 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589779
Unique NamemRNA_5625
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2079
Alignment locationscaffold_11:158334..160582 -

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Properties
Property NameValue
TranscriptId589865
TrackFilteredModels2
ProteinId589779
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:158334..160582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589779gene_5625Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589779mRNA_5625-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5625CDS_5625Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5625 ID=mRNA_5625|Name=jgi.p|Nanoce1779_2|589779|organism=Nannochloropsis oceanica|type=mRNA|length=2079bp
GTCGGAAAAACTTTGTGGCCGCCCTCTTCGCTTTATTCTACACTTCAACA
CGTATTCGAAGTTCTCCAGGGCGAGGTGGCAAAATCCGTACGTCAGCCCA
AGAATACCGGATTAAATCCGGGAGCTAGTGCAGGACTGGATAGATTGAAA
AGATTGACAGGATCTGCTTCGAGGAGGAATGCCCAGCAAGGTTGGCTATA
TCGCTTCCATGTGTTTTCCTGGAGGCTTTTTTTTTAATTTCCCTCCTACC
ACACTCTATATGGGCCCCCGGTCTTTGCCTTCTCTTTTTATTTTTGTTTA
TCTCGTCGCACACGAAAAATGTCATGGGTTGATTTCCCCTTATCACGGTG
CTGCATATACCCCTCCTCAGTGGAGACGGCCTTGGTCTCCGCATCCGAAG
CCACGTCATTGCCATCACCGCGGTCGTAGATTGCTCGGTCTTCTTCGAGG
CTGGCTGGAATAAATTCAGCCCCCCTCGGTAAAGGTACGCGGGCGCAGTG
TGCTTGTATCCCAGCCCAAGCGCTGCATCCATTCCACTACGAAGAGAGCC
CCTACCTTCCCCCTAACCCCAGCCCAGCGCTGAAACCTTCCGAAGAAGAG
CCCCGTGATACCCTCAATGGAGCTTAATGGAGCTGTTCCTTGTCCCCCAG
CCACCGCGCTGCGTCCTTCCCACTCTGAAGATGAGTCCCTGTCCCCTTTC
GCGCTGTATCCTCCCTTTTGCGAAGAACTCCCCCCCTCCCCCTGCGTCCT
TCCCCACTGCGAAGAAAATCTCCTGAGTTCCCATGTTCCCCCCGCCCCAC
GTGCTTTTCCTTCCCACTGCGAAGATGAGTCCATAGGCTCCTCCCCCGGT
TCCCCAGACCTGCGAGACTTGCTTCCCACCGCAAAAGAGAATTCCCTTGT
CCTCCCTTCCTCCCCCCCCCTCCCCGCGCGCGTGCATGTCTTTCTCTTCC
CTAGTTTGCATCCCCCCGCCCATAGGCGTGTGGCTAACCAGGGTCAACGT
CCCACCATCTTCCGTCCTAGTGTGATTCCTTATTCCCCCGACGTATCCCT
TTCGCTCTGCCGGAAATCAGAGCCTTGGACCAACGGGCCACTTTTTGCGC
CACACACAGTCGCCTGGTATCTCAATAACCACCAGTCCTATCGGCCGCCG
ACGGCTCTGTACGCCAGGCGCCCGAGCGCTTCTTCGAGGTCGCAGTACGG
CGTTTTATCTCGTCTTTCCCCTGCCGCAGCCCCTCTACGACTCCCCTGGG
GCGCCACACGCTCAATTGTCCTACTAACACCTCATTCATCGAAGTGACCA
TATTGGCTGCCACGGTGCCGCTCTAGAAATGAGTTCAAGCATGTTATTCT
TGGGCTGGTATGCCGCGATGGTTACCAAATAGGGGATTGAAAAAAAATAA
AAACAAAAAACTCGGGCCTTACCGCCGCGATATCTTCATGACAACCGTCT
CCCTGTTGCGCTCGTTTCGTCCTCCTTTATAAAAATTTATATTGTTTCGC
AATTTCCTATGGCCGTCACGGACACAGCAATAATCGAAATATCTCACCCG
GTGAATCAACCTTGTAAATTTAATACGCAAACGTCGTCGCACTCCCGTCT
CTCACCTACCTCCTACCCATCCCCTACCTTCTATTTATTCTCTCCCTCTC
CCTTTCCCTGGATCAAAATCATGCTTCAAATCTTAGCATGAAATATATAC
AGTTCGCAGGCGTCGTCAAAATCTAATTTCTTACCATTTCTGTTCGACGA
GTCACTTCGTTTTACTCCCTCTCCTCATCCTCCCGCCTCCCTTCCCACTT
AAATTTTCACATTCTGTCTTCGCCCTCGTCTCTACTCCATCCTTCCCGTC
TACTCTTCCTTTCTTTTTCCTTCCCTCCCTCCTTCTCTCTTACTCTCTTT
CTCTCTCACTCTTCCTACCTATCCATCTATTCATCTGTCATACACACACA
TAATCGCTCAAGCACCGCCCTTATACCCCCACCTTTCGTTCTTCCTCCTC
CCCTTCCTCCTCACCCGCCAAGATAAGCAAGGCCCCCTCCTCCTTCTTCG
CCTCTCCCTCCCTCCCTCCCTCCATCTTC
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protein sequence of jgi.p|Nanoce1779_2|589779

>mRNA_5625-protein ID=mRNA_5625-protein|Name=jgi.p|Nanoce1779_2|589779|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MELNGAVPCPPATALRPSHSEDESLSPFALYPPFCEELPPSPCVLPHCEE
NLLSSHVPPAPRAFPSHCEDESIGSSPGSPDLRDLLPTAKENSLVLPSSP
PLPARVHVFLFPSLHPPAHRRVANQGQRPTIFRPSVIPYSPDVSLSLCRK
SEPWTNGPLFAPHTVAWYLNNHQSYRPPTALYARRPSASSRSQYGVLSRL
SPAAAPLRLPWGATRSIVLLTPHSSK*
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mRNA from alignment at scaffold_11:158334..160582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5625 ID=mRNA_5625|Name=jgi.p|Nanoce1779_2|589779|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp|location=Sequence derived from alignment at scaffold_11:158334..160582- (Nannochloropsis oceanica)
GTCGGAAAAACTTTGTGGCCGCCCTCTTCGCTTTATTCTACACTTCAACA
CGTATTCGAAGTTCTCCAGGGCGAGGTGGCAAAATCCGTACGTCAGCCCA
AGAATACCGGATTAAATCCGGGAGCTAGTGCAGGACTGGATAGATTGAAA
AGATTGACAGGATCTGCTTCGAGGAGGAATGCCCAGCAAGGTTGGCTATA
TCGCTTCCATGTGTTTTCCTGGAGGCTTTTTTTTTAATTTCCCTCCTACC
ACACTCTATATGGGCCCCCGGTCTTTGCCTTCTCTTTTTATTTTTGTTTA
TCTCGTCGCACACGAAAAATGTCATGGGTTGATTTCCCCTTATCACGGTG
CTGCATATACCCCTCCTCAGTGGAGCTGTCCTTATGCAGAGACCAAGGCC
GTTTTTAAAGACGCAACGATCAAGGTACAACGCATCGTGACCGGAGCATG
ATGTACGTGTGAAAGCGTGCATCTCAAAACGTCTAAATACAAGGGCGAGC
TCAATGGCCTTGTTGAATAAGACCTTGATCATTGCGTCTTTCAGGACGGC
CTTGGTCTCCGCATCCGAAGCCACGTCATTGCCATCACCGCGGTCGTAGA
TTGCTCGGTCTTCTTCGAGGCTGGCTGGAATAAATTCAGCCCCCCTCGGT
AAAGGTACGCGGGCGCAGTGTGCTTGTATCCCAGCCCAAGCGCTGCATCC
ATTCCACTACGAAGAGAGCCCCTACCTTCCCCCTAACCCCAGCCCAGCGC
TGAAACCTTCCGAAGAAGAGCCCCGTGATACCCTCAATGGAGCTTAATGG
AGCTGTTCCTTGTCCCCCAGCCACCGCGCTGCGTCCTTCCCACTCTGAAG
ATGAGTCCCTGTCCCCTTTCGCGCTGTATCCTCCCTTTTGCGAAGAACTC
CCCCCCTCCCCCTGCGTCCTTCCCCACTGCGAAGAAAATCTCCTGAGTTC
CCATGTTCCCCCCGCCCCACGTGCTTTTCCTTCCCACTGCGAAGATGAGT
CCATAGGCTCCTCCCCCGGTTCCCCAGACCTGCGAGACTTGCTTCCCACC
GCAAAAGAGAATTCCCTTGTCCTCCCTTCCTCCCCCCCCCTCCCCGCGCG
CGTGCATGTCTTTCTCTTCCCTAGTTTGCATCCCCCCGCCCATAGGCGTG
TGGCTAACCAGGGTCAACGTCCCACCATCTTCCGTCCTAGTGTGATTCCT
TATTCCCCCGACGTATCCCTTTCGCTCTGCCGGAAATCAGAGCCTTGGAC
CAACGGGCCACTTTTTGCGCCACACACAGTCGCCTGGTATCTCAATAACC
ACCAGTCCTATCGGCCGCCGACGGCTCTGTACGCCAGGCGCCCGAGCGCT
TCTTCGAGGTCGCAGTACGGCGTTTTATCTCGTCTTTCCCCTGCCGCAGC
CCCTCTACGACTCCCCTGGGGCGCCACACGCTCAATTGTCCTACTAACAC
CTCATTCATCGAAGTGACCATATTGGCTGCCACGGTGCCGCTCTAGAAAT
GAGTTCAAGCATGTTATTCTTGGGCTGGTATGCCGCGATGGTTACCAAAT
AGGGGATTGAAAAAAAATAAAAACAAAAAACTCGGGCCTTACCGCCGCGA
TATCTTCATGACAACCGTCTCCCTGTTGCGCTCGTTTCGTCCTCCTTTAT
AAAAATTTATATTGTTTCGCAATTTCCTATGGCCGTCACGGACACAGCAA
TAATCGAAATATCTCACCCGGTGAATCAACCTTGTAAATTTAATACGCAA
ACGTCGTCGCACTCCCGTCTCTCACCTACCTCCTACCCATCCCCTACCTT
CTATTTATTCTCTCCCTCTCCCTTTCCCTGGATCAAAATCATGCTTCAAA
TCTTAGCATGAAATATATACAGTTCGCAGGCGTCGTCAAAATCTAATTTC
TTACCATTTCTGTTCGACGAGTCACTTCGTTTTACTCCCTCTCCTCATCC
TCCCGCCTCCCTTCCCACTTAAATTTTCACATTCTGTCTTCGCCCTCGTC
TCTACTCCATCCTTCCCGTCTACTCTTCCTTTCTTTTTCCTTCCCTCCCT
CCTTCTCTCTTACTCTCTTTCTCTCTCACTCTTCCTACCTATCCATCTAT
TCATCTGTCATACACACACATAATCGCTCAAGCACCGCCCTTATACCCCC
ACCTTTCGTTCTTCCTCCTCCCCTTCCTCCTCACCCGCCAAGATAAGCAA
GGCCCCCTCCTCCTTCTTCGCCTCTCCCTCCCTCCCTCCCTCCATCTTC
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Coding sequence (CDS) from alignment at scaffold_11:158334..160582-

>mRNA_5625 ID=mRNA_5625|Name=jgi.p|Nanoce1779_2|589779|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_11:158334..160582- (Nannochloropsis oceanica)
ATGGAGCTTAATGGAGCTGTTCCTTGTCCCCCAGCCACCGCGCTGCGTCC
TTCCCACTCTGAAGATGAGTCCCTGTCCCCTTTCGCGCTGTATCCTCCCT
TTTGCGAAGAACTCCCCCCCTCCCCCTGCGTCCTTCCCCACTGCGAAGAA
AATCTCCTGAGTTCCCATGTTCCCCCCGCCCCACGTGCTTTTCCTTCCCA
CTGCGAAGATGAGTCCATAGGCTCCTCCCCCGGTTCCCCAGACCTGCGAG
ACTTGCTTCCCACCGCAAAAGAGAATTCCCTTGTCCTCCCTTCCTCCCCC
CCCCTCCCCGCGCGCGTGCATGTCTTTCTCTTCCCTAGTTTGCATCCCCC
CGCCCATAGGCGTGTGGCTAACCAGGGTCAACGTCCCACCATCTTCCGTC
CTAGTGTGATTCCTTATTCCCCCGACGTATCCCTTTCGCTCTGCCGGAAA
TCAGAGCCTTGGACCAACGGGCCACTTTTTGCGCCACACACAGTCGCCTG
GTATCTCAATAACCACCAGTCCTATCGGCCGCCGACGGCTCTGTACGCCA
GGCGCCCGAGCGCTTCTTCGAGGTCGCAGTACGGCGTTTTATCTCGTCTT
TCCCCTGCCGCAGCCCCTCTACGACTCCCCTGGGGCGCCACACGCTCAAT
TGTCCTACTAACACCTCATTCATCGAAGTGA
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Synonyms
Publications