jgi.p|Nanoce1779_2|630427, mRNA_5624 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630427
Unique Name	mRNA_5624
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	927
Alignment location	scaffold_11:155553..157130 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630513
Track	FilteredModels2
ProteinId	630427

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:155553..157130 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630427	gene_5624	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630427	mRNA_5624-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5624	CDS_5624	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:155553..157130+
coding sequence from alignment at scaffold_11:155553..157130+

mRNA sequence

>mRNA_5624 ID=mRNA_5624|Name=jgi.p|Nanoce1779_2|630427|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
CAGGCACATCGATCTGCTCAATTGCCAGCCCCCCGCCGTGAACCAGATGG
GGGAAGGTGGAAGAAGCAAGGCAGCCTCCTCCCCATCCTCCTCCTCCTCC
TCCACCTCCTCCCCATCCTCCTCCTCCTTCTCTTCCACCGCCACCTCCAC
GCCTTCTACGTTATTAACTCAACCCCTCATCATCCCGATCAAGGACGACA
ACAGCATTCATGGTACCGGTGCCGCAGCCACAGCGTCAGCAAGCGTGAGA
AAACCGGCGCTAGCTATGTCCATGTGGCCTACTTTTCTCCCCAGCGTCTT
ATTCTATTTCTCCCTCTTTGGGATCCAGCCCATTCTCTCCCAGTTCATCA
TCCAGCTTGAATGCGACAGAATGGGAGCTAGCGATTGCAACAGCCCTGAG
GTCAGCGGTGCTTCCGTTTTGACGATCAAGTACCTGTACACCCTGGAATT
TGCCAGTGCCACCCTGACGGTCGGAACCCTGGGAGCCATGTCAGACTACT
GGGGGAGAAAAAAAGCCGTCATCCTCACGAGCTGCGGCGCCCTCTTCAAC
ATCTGCCTACTCCTCCTCGCCCTCACCTTCTCCGCGTCTTCCTCTTCTTT
CTCCACCGCCACCACGCCCGGGGTGCCATCCTCCCCTTCTTCGTATCGGG
CGGCACTGATTTGTCTGTATGTGGGTACCATCGTAAACGGTTTATCAGGC
TCCTACGGTGTCTACCTCACCGGCATCTACGCGTACGCTGCAGATATCAC
GAAGCGAGCCCCGGCGGATCGTGGTGTCCTCTTTGCGAAAATCGTCGGCT
CGATTGCAGTAGGCAACACGCTTGGCCCCCTCGTCTCCGGGCTGCTCCTC
AAGAGCCATGGCTTCTACTTGCCGCTGCTCGTTAATGCCCTGCTTTGTCT
GGTGACCATCACACTCCTGGGCTGGCG

protein sequence of jgi.p|Nanoce1779_2|630427

>mRNA_5624-protein ID=mRNA_5624-protein|Name=jgi.p|Nanoce1779_2|630427|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MGEGGRSKAASSPSSSSSSTSSPSSSSFSSTATSTPSTLLTQPLIIPIKD
DNSIHGTGAAATASASVRKPALAMSMWPTFLPSVLFYFSLFGIQPILSQF
IIQLECDRMGASDCNSPEVSGASVLTIKYLYTLEFASATLTVGTLGAMSD
YWGRKKAVILTSCGALFNICLLLLALTFSASSSSFSTATTPGVPSSPSSY
RAALICLYVGTIVNGLSGSYGVYLTGIYAYAADITKRAPADRGVLFAKIV
GSIAVGNTLGPLVSGLLLKSHGFYLPLLVNALLCLVTITLLGW

mRNA from alignment at scaffold_11:155553..157130+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5624 ID=mRNA_5624|Name=jgi.p|Nanoce1779_2|630427|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp|location=Sequence derived from alignment at scaffold_11:155553..157130+ (Nannochloropsis oceanica)
CAGGCACATCGATCTGCTCAATTGCCAGCCCCCCGCCGTGAACCAGATGG
GGGAAGGTGGAAGAAGCAAGGCAGCCTCCTCCCCATCCTCCTCCTCCTCC
TCCACCTCCTCCCCATCCTCCTCCTCCTTCTCTTCCACCGCCACCTCCAC
GCCTTCTACGTTATTAACTCAACCCCTCATCATCCCGATCAAGGACGACA
ACAGCATTCATGGTACCGGTGCCGCAGCCACAGCGTCAGCAAGCGTGAGA
AAACCGGCGCTAGCTATGTCCATGTGGCCTACTTTTCTCCCCAGCGTCTT
ATTCTATTTCTCCCTCTTTGGGATCCAGCCCATTCTCTCCCAGTTCATCA
TCCAGGTTCGTCCACACTTCCGTCCGTCCGTCCGTTGCTTCCTCCTCTCC
ATCCCCTATGATAGTCACCTTCCATAGAAATTATGTCGGGCTTATCGAAC
GCCCTTCACGTTCATATTGCCATGTACCTATCTTCATGCCAAGCTTACAC
TTTTTCTTACATCCCCCCCCTCCTCTCCCTCTCTTCCTTCGTCTGTCTCC
CCTTCCCTCCTCCTCATTCCTCCAGCTTGAATGCGACAGAATGGGAGCTA
GCGATTGCAACAGCCCTGAGGTCAGCGGTGCTTCCGTTTTGACGATCAAG
GTACGTGCCAACCCCTCCCTCCCTCCTCCCTCACTTCCTTTCTTCCTCCC
TCCTTCACTTACGCCTTCTAATTCTCCTTCCTCCCCCTCCCTCCTTTCCT
CTTTCCCTCTTTTGATCCTCCCTCCCTCCCTCTTTCCCTCCCTCCCTCAC
TTCCTCAGTACCTGTACACCCTGGAATTTGCCAGTGCCACCCTGACGGTC
GGAACCCTGGGAGCCATGTCAGACTACTGGGGGAGAAAAAAAGCCGTCAT
CCTCACGAGCTGCGGCGCCCTCTTCAACATCTGCCTACTCCTCCTCGCCC
TCACCTTCTCCGCGTCTTCCTCTTCTTTCTCCACCGCCACCACGCCCGGG
GTGCCATCCTCCCCTTCTTCGTATCGGGCGGCACTGATTTGTCTGTATGT
GGGTACCATCGTAAACGGTTTATCAGGCTCCTACGGTGTCTACCTCACCG
GCATCTACGCGTACGCTGCAGGTACCTCCTCCCTTGCCCTCGCTCCCCCG
CTCTCTCTATTCTCCCCACCGACCAATCCCCGGCTCGCGGCGTCCTGTTG
CATAGAATCGATTTACAATGATGCATATGCACTGATGCATGTATCTCACC
CTCACCCCCATCTCCCAACCAACCCGCAGATATCACGAAGCGAGCCCCGG
CGGATCGTGGTGTCCTCTTTGCGAAAATCGTCGGCTCGATTGCAGTAGGC
AACACGCTTGGCCCCCTCGTCTCCGGGCTGCTCCTCAAGAGCCATGGCTT
CTACTTGCCGCTGCTCGTTAATGCCCTGCTTTGTCTGGTGACCATCACAC
TCCTGGGTGAGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAAGGAG
GGAAGGAGGGGCCTTGGCATGCAATCCCAAAACTTTCCTTAACCCCCCCC
CTTCCTCTCTCCCTTTCTCAGGCTGGCG

Coding sequence (CDS) from alignment at scaffold_11:155553..157130+

>mRNA_5624 ID=mRNA_5624|Name=jgi.p|Nanoce1779_2|630427|organism=Nannochloropsis oceanica|type=CDS|length=4395bp|location=Sequence derived from alignment at scaffold_11:155553..157130+ (Nannochloropsis oceanica)
ATGGGGGAAGGTGGAAGAAGCAAGGCAGCCTCCTCCCCATCCTCCTCCTC
CTCCTCCACCTCCTCCCCATCCTCCTCCTCCTTCTCTTCCACCGCCACCT
CCACGCCTTCTACGTTATTAACTCAACCCCTCATCATCCCGATCAAGGAC
GACAACAGCATTCATGGTACCGGTGCCGCAGCCACAGCGTCAGCAAGCGT
GAGAAAACCGGCGCTAGCTATGTCCATGTGGCCTACTTTTCTCCCCAGCG
TCTTATTCTATTTCTCCCTCTTTGGGATCCAGCCCATTCTCTCCCAGTTC
ATCATCCAGCTTGAATGCGACAGAATGGGAGCTAGCGATTGCAACAGCCC
TGAGGTCAGCGGTGCTTCCGTTTTGACGATCAAGTACCTGTACACCCTGG
AATTTGCCAGTGCCACCCTGACGGTCGGAACCCTGGGAGCCATGTCAGAC
TACTGGGGGAGAAAAAAAGCCGTCATCCTCACGAGCTGCGGCGCCCTCTT
CAACATCTGCCTACTCCTCCTCGCCCTCACCTTCTCCGCGTCTTCCTCTT
CTTTCTCCACCGCCACCACGCCCGGGGTGCCATCCTCCCCTTCTTCGTAT
CGGGCGGCACTGATTTGTCTGTATGTGGGTACCATCGTAAACGGTTTATC
AGGCTCCTACGGTGTCTACCTCACCGGCATCTACGCGTACGCTGCAGATA
TCACGAAGCGAGCCCCGGCGGATCGTGGTGTCCTCTTTGCGAAAATCGTC
GGCTCGATTGCAGTAGGCAACACGCTTGGCCCCCTCGTCTCCGGGCTGCT
CCTCAAGAGCCATGGCTTCTACTTGCCGCTGCTCGTTAATGCCCTGCTTT
GTCTGGTGACCATCACACTCCTGGGCTGGATGGGGGAAGGTGGAAGAAGC
AAGGCAGCCTCCTCCCCATCCTCCTCCTCCTCCTCCACCTCCTCCCCATC
CTCCTCCTCCTTCTCTTCCACCGCCACCTCCACGCCTTCTACGTTATTAA
CTCAACCCCTCATCATCCCGATCAAGGACGACAACAGCATTCATGGTACC
GGTGCCGCAGCCACAGCGTCAGCAAGCGTGAGAAAACCGGCGCTAGCTAT
GTCCATGTGGCCTACTTTTCTCCCCAGCGTCTTATTCTATTTCTCCCTCT
TTGGGATCCAGCCCATTCTCTCCCAGTTCATCATCCAGCTTGAATGCGAC
AGAATGGGAGCTAGCGATTGCAACAGCCCTGAGGTCAGCGGTGCTTCCGT
TTTGACGATCAAGTACCTGTACACCCTGGAATTTGCCAGTGCCACCCTGA
CGGTCGGAACCCTGGGAGCCATGTCAGACTACTGGGGGAGAAAAAAAGCC
GTCATCCTCACGAGCTGCGGCGCCCTCTTCAACATCTGCCTACTCCTCCT
CGCCCTCACCTTCTCCGCGTCTTCCTCTTCTTTCTCCACCGCCACCACGC
CCGGGGTGCCATCCTCCCCTTCTTCGTATCGGGCGGCACTGATTTGTCTG
TATGTGGGTACCATCGTAAACGGTTTATCAGGCTCCTACGGTGTCTACCT
CACCGGCATCTACGCGTACGCTGCAGATATCACGAAGCGAGCCCCGGCGG
ATCGTGGTGTCCTCTTTGCGAAAATCGTCGGCTCGATTGCAGTAGGCAAC
ACGCTTGGCCCCCTCGTCTCCGGGCTGCTCCTCAAGAGCCATGGCTTCTA
CTTGCCGCTGCTCGTTAATGCCCTGCTTTGTCTGGTGACCATCACACTCC
TGGGCTGGATGGGGGAAGGTGGAAGAAGCAAGGCAGCCTCCTCCCCATCC
TCCTCCTCCTCCTCCACCTCCTCCCCATCCTCCTCCTCCTTCTCTTCCAC
CGCCACCTCCACGCCTTCTACGTTATTAACTCAACCCCTCATCATCCCGA
TCAAGGACGACAACAGCATTCATGGTACCGGTGCCGCAGCCACAGCGTCA
GCAAGCGTGAGAAAACCGGCGCTAGCTATGTCCATGTGGCCTACTTTTCT
CCCCAGCGTCTTATTCTATTTCTCCCTCTTTGGGATCCAGCCCATTCTCT
CCCAGTTCATCATCCAGCTTGAATGCGACAGAATGGGAGCTAGCGATTGC
AACAGCCCTGAGGTCAGCGGTGCTTCCGTTTTGACGATCAAGTACCTGTA
CACCCTGGAATTTGCCAGTGCCACCCTGACGGTCGGAACCCTGGGAGCCA
TGTCAGACTACTGGGGGAGAAAAAAAGCCGTCATCCTCACGAGCTGCGGC
GCCCTCTTCAACATCTGCCTACTCCTCCTCGCCCTCACCTTCTCCGCGTC
TTCCTCTTCTTTCTCCACCGCCACCACGCCCGGGGTGCCATCCTCCCCTT
CTTCGTATCGGGCGGCACTGATTTGTCTGTATGTGGGTACCATCGTAAAC
GGTTTATCAGGCTCCTACGGTGTCTACCTCACCGGCATCTACGCGTACGC
TGCAGATATCACGAAGCGAGCCCCGGCGGATCGTGGTGTCCTCTTTGCGA
AAATCGTCGGCTCGATTGCAGTAGGCAACACGCTTGGCCCCCTCGTCTCC
GGGCTGCTCCTCAAGAGCCATGGCTTCTACTTGCCGCTGCTCGTTAATGC
CCTGCTTTGTCTGGTGACCATCACACTCCTGGGCTGGATGGGGGAAGGTG
GAAGAAGCAAGGCAGCCTCCTCCCCATCCTCCTCCTCCTCCTCCACCTCC
TCCCCATCCTCCTCCTCCTTCTCTTCCACCGCCACCTCCACGCCTTCTAC
GTTATTAACTCAACCCCTCATCATCCCGATCAAGGACGACAACAGCATTC
ATGGTACCGGTGCCGCAGCCACAGCGTCAGCAAGCGTGAGAAAACCGGCG
CTAGCTATGTCCATGTGGCCTACTTTTCTCCCCAGCGTCTTATTCTATTT
CTCCCTCTTTGGGATCCAGCCCATTCTCTCCCAGTTCATCATCCAGCTTG
AATGCGACAGAATGGGAGCTAGCGATTGCAACAGCCCTGAGGTCAGCGGT
GCTTCCGTTTTGACGATCAAGTACCTGTACACCCTGGAATTTGCCAGTGC
CACCCTGACGGTCGGAACCCTGGGAGCCATGTCAGACTACTGGGGGAGAA
AAAAAGCCGTCATCCTCACGAGCTGCGGCGCCCTCTTCAACATCTGCCTA
CTCCTCCTCGCCCTCACCTTCTCCGCGTCTTCCTCTTCTTTCTCCACCGC
CACCACGCCCGGGGTGCCATCCTCCCCTTCTTCGTATCGGGCGGCACTGA
TTTGTCTGTATGTGGGTACCATCGTAAACGGTTTATCAGGCTCCTACGGT
GTCTACCTCACCGGCATCTACGCGTACGCTGCAGATATCACGAAGCGAGC
CCCGGCGGATCGTGGTGTCCTCTTTGCGAAAATCGTCGGCTCGATTGCAG
TAGGCAACACGCTTGGCCCCCTCGTCTCCGGGCTGCTCCTCAAGAGCCAT
GGCTTCTACTTGCCGCTGCTCGTTAATGCCCTGCTTTGTCTGGTGACCAT
CACACTCCTGGGCTGGATGGGGGAAGGTGGAAGAAGCAAGGCAGCCTCCT
CCCCATCCTCCTCCTCCTCCTCCACCTCCTCCCCATCCTCCTCCTCCTTC
TCTTCCACCGCCACCTCCACGCCTTCTACGTTATTAACTCAACCCCTCAT
CATCCCGATCAAGGACGACAACAGCATTCATGGTACCGGTGCCGCAGCCA
CAGCGTCAGCAAGCGTGAGAAAACCGGCGCTAGCTATGTCCATGTGGCCT
ACTTTTCTCCCCAGCGTCTTATTCTATTTCTCCCTCTTTGGGATCCAGCC
CATTCTCTCCCAGTTCATCATCCAGCTTGAATGCGACAGAATGGGAGCTA
GCGATTGCAACAGCCCTGAGGTCAGCGGTGCTTCCGTTTTGACGATCAAG
TACCTGTACACCCTGGAATTTGCCAGTGCCACCCTGACGGTCGGAACCCT
GGGAGCCATGTCAGACTACTGGGGGAGAAAAAAAGCCGTCATCCTCACGA
GCTGCGGCGCCCTCTTCAACATCTGCCTACTCCTCCTCGCCCTCACCTTC
TCCGCGTCTTCCTCTTCTTTCTCCACCGCCACCACGCCCGGGGTGCCATC
CTCCCCTTCTTCGTATCGGGCGGCACTGATTTGTCTGTATGTGGGTACCA
TCGTAAACGGTTTATCAGGCTCCTACGGTGTCTACCTCACCGGCATCTAC
GCGTACGCTGCAGATATCACGAAGCGAGCCCCGGCGGATCGTGGTGTCCT
CTTTGCGAAAATCGTCGGCTCGATTGCAGTAGGCAACACGCTTGGCCCCC
TCGTCTCCGGGCTGCTCCTCAAGAGCCATGGCTTCTACTTGCCGCTGCTC
GTTAATGCCCTGCTTTGTCTGGTGACCATCACACTCCTGGGCTGG

Synonyms

Publications