jgi.p|Nanoce1779_2|589773, mRNA_5622 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589773
Unique Name	mRNA_5622
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2648
Alignment location	scaffold_11:151522..154169 -

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Properties


Property Name	Value
TranscriptId	589859
Track	FilteredModels2
ProteinId	589773

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:151522..154169 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589773	gene_5622	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589773	mRNA_5622-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5622	CDS_5622	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:151522..154169-
coding sequence from alignment at scaffold_11:151522..154169-

mRNA sequence

>mRNA_5622 ID=mRNA_5622|Name=jgi.p|Nanoce1779_2|589773|organism=Nannochloropsis oceanica|type=mRNA|length=2648bp
ACCTCCCCCGAGCCAATGGGGTTTGGCTCGCAATACACTAAAGCTACCAG
CCCTTCCTCCGCCGCCTCCTCCCTCTCCGTGCTTATGCGAGAGAGCGGGG
CCAGAGTCTTTACAATCGGATCCCTCCGGTCCTTGTGCTCGCTAGACTCA
ACGCACGGGCTCACCCTCTCCTGGGAAATCAAGGACGATATGGCGGGTGT
GGAGCTGTAGCTGGAAGGGAATGGAGAAGGCTGGATCGCGGGAGGAGTGG
TTAATAAGGATACTACTATGGTCACTTCACCGGCACACCAAGTCCTGCTC
TTTGATTATGCCGCTGGTGCAGCCCAAGCATTGGCGCTACGAGGCTATCA
GGCAAGCGATTTGAAGGAGATAAATATGTCCACAGTTGGTATGACGCCTA
TCTTGCTGCAAAGTGCAGCTGGTAAGCTCTACATGCGGTACGATCAGTCG
CTGGCTCGTGCGAGCGCTCCTGTGGACCTCACTGGCACTACCAACTTTAT
GTGGGCCTGGGCCGAATCTGGCTACCCTGCGATTCACGACCGTCATGGAG
CCATTAAAATAAACTGGATCGCAGGCACGTGCAAGCCTTCGATAGAGCGA
TTCCTCCTCGGAGGATACTGGCTCCTACTACTGCCTTTTCTTGGTCTACT
TCTGACGTGTACAAGGCTTAAACGGACATCTTGGGGCCACAGCCTTTTGC
AACATCGCCTAGGTCCGATCCCCACTCAACTGTCCGCATGGATGAATACG
TTCACAGGAGGTGCAATCCCCACTTTCCTCAACCTGAAGTACGGCGAGAT
ATGGATAATGGCGACGTACGGCATCCTGCAATTAGCTTTCATGGTGTATT
GGACCATGAAGGAAGGTGCAGTGGGCGTCCGAACAACAGGAATTGCCTTC
GGAAAAGCCGCGCTTACCAATCTGATGATGACATTCTTACCAGTAAACAA
AACAACGGTGTGGGTGCGGCTGTTTGGCATTTCATTCGAGCGGTCCGTCA
AGTTTCACCGGCAGTTGTCGTATCTAGCGATGGCCACGATGACCATCCAT
CTTGTGTGCATGACGCCCAAGGGCCCCGTGTGGGACCGCACACCTCTCGC
CAGTGGCGTCGTCGTGGCCTACAGTCTCCTGGCTTTCCTTTCCTTTACAT
TTATGTCCTTGACGGCCATGCTCCGGCGGTGGTGCTATGAGCTGTTCCGG
TACGCACACTACCTTTACATCGCAGGTACTGCCTTTGTCTTGCTCCATGC
CCCGGAAGCTTGGCAATATTTAGTTATTCCTTGCGTTATACACATCGCGG
ACTTTTCCTGGCGATGGTATAACATCCTCCACAATCCTACTTGGGCCACA
CTTGCTGCCTTACCCGGTGACGTGACGCAGGTGGACGTCAGACACAGACA
GGAAAAACGCAGCCGCAGCAATGGCGGCGCAGATGGCATAGGCGGCGAGA
GCAAGTGGGCCTTACCCTTAGAGCCCGGAAGCTATGTCTGGGTCTGCATT
CCTCAATTGTCTCTACTACAATGGCATCTTATTTCCATATCAACAGCCGG
CTTGCTGCATGAAGGGGTGCAGTCGGAAGCGGAGGCGCCGCTCTTTCATC
TTCACATCAAGAGCCTGGGCAAGGGTACTTGGACCAATGGTCTTTACCAA
GTAGCTGCTCAAGGAGTCGTGCCCAAATAGAATCCCGGGTCTTCGAATCG
CTCGGTTTGCTGTGTGTACTGATTTTCAAAATACAGATCGCTGGCAAACT
CCCACAGTCACGGCGCGATGGCGAAGAACAAAAATGCCCCAAGCGCGCCG
CCCATGTCGCCGCCCACGTTGGCCGTTTTGGTGGATGGACCGTATGGCAG
GCTTTCGATTGACCTACAGCGATACCATCAGCTGGTGTTAGTAGCAGGAG
GAATCGGTCTCATGCCTTTGACTTCATTGTTGTCGTATATTAGCCATTGC
ATTCGCAAAGGCATGATGACTAGTCTCAAAAGTATTACCCTTGTGTGGGC
CTTACGGGATGTGGCCTTACTTGAAGGCTTCACCACCTTCCTGGATCAGA
TCAATGATGAGCTGAATAAGCATCTGATTGAGCAACAACAGTCACAGCAG
TCCTCACAGCGGCAGTGTGTCCACTTTGGTATGCATATTTACGTGACAGC
TGTCGGAGGAAATGTTGTGCACGGGGTGAATAGCATCGGAATAGAGGATG
AAAATAAGACCATGCACAAGGAAATAGGCGGTCGAATGCGCTTGGTGGAC
GGTGGGGGAGGAGGTCAGAAGGACTTTCGCGTACTGTACGGCAGGCCCAA
GATATTTTGGTAAATGATTTCGTTGAAGGTCAGTCCGCAGCTTCGACAGG
GGTCCTGGCCTGCGCACCTGAGGGATTGCTACACCAGATCCAACGTCAGT
GCGTGTTGCGCAATGTGGATGTTCATATAGAAGAGTTTCCTTACTAAAAA
GCACAAGGAAAATCATTTAAAACCGTCTTCCTATGATGAAGGAATATGAA
AGGCAAAGTGCTGCATGCATATGTGTCGATGTGAAAAAGCAAAGGCAACA
AAAACAAAGTGAACAAATCAGGCAGACAGGAATTTGTCATCTTTAGACAC
AAGAAAATTAGCGCGATGCGTCCATCAATAATTGTAAGGGCAAAATAT

protein sequence of jgi.p|Nanoce1779_2|589773

>mRNA_5622-protein ID=mRNA_5622-protein|Name=jgi.p|Nanoce1779_2|589773|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MVTSPAHQVLLFDYAAGAAQALALRGYQASDLKEINMSTVGMTPILLQSA
AGKLYMRYDQSLARASAPVDLTGTTNFMWAWAESGYPAIHDRHGAIKINW
IAGTCKPSIERFLLGGYWLLLLPFLGLLLTCTRLKRTSWGHSLLQHRLGP
IPTQLSAWMNTFTGGAIPTFLNLKYGEIWIMATYGILQLAFMVYWTMKEG
AVGVRTTGIAFGKAALTNLMMTFLPVNKTTVWVRLFGISFERSVKFHRQL
SYLAMATMTIHLVCMTPKGPVWDRTPLASGVVVAYSLLAFLSFTFMSLTA
MLRRWCYELFRYAHYLYIAGTAFVLLHAPEAWQYLVIPCVIHIADFSWRW
YNILHNPTWATLAALPGDVTQVDVRHRQEKRSRSNGGADGIGGESKWALP
LEPGSYVWVCIPQLSLLQWHLISISTAGLLHEGVQSEAEAPLFHLHIKSL
GKGTWTNGLYQVAAQGVVPK*

mRNA from alignment at scaffold_11:151522..154169-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5622 ID=mRNA_5622|Name=jgi.p|Nanoce1779_2|589773|organism=Nannochloropsis oceanica|type=mRNA|length=2648bp|location=Sequence derived from alignment at scaffold_11:151522..154169- (Nannochloropsis oceanica)
ACCTCCCCCGAGCCAATGGGGTTTGGCTCGCAATACACTAAAGCTACCAG
CCCTTCCTCCGCCGCCTCCTCCCTCTCCGTGCTTATGCGAGAGAGCGGGG
CCAGAGTCTTTACAATCGGATCCCTCCGGTCCTTGTGCTCGCTAGACTCA
ACGCACGGGCTCACCCTCTCCTGGGAAATCAAGGACGATATGGCGGGTGT
GGAGCTGTAGCTGGAAGGGAATGGAGAAGGCTGGATCGCGGGAGGAGTGG
TTAATAAGGATACTACTATGGTCACTTCACCGGCACACCAAGTCCTGCTC
TTTGATTATGCCGCTGGTGCAGCCCAAGCATTGGCGCTACGAGGCTATCA
GGCAAGCGATTTGAAGGAGATAAATATGTCCACAGTTGGTATGACGCCTA
TCTTGCTGCAAAGTGCAGCTGGTAAGCTCTACATGCGGTACGATCAGTCG
CTGGCTCGTGCGAGCGCTCCTGTGGACCTCACTGGCACTACCAACTTTAT
GTGGGCCTGGGCCGAATCTGGCTACCCTGCGATTCACGACCGTCATGGAG
CCATTAAAATAAACTGGATCGCAGGCACGTGCAAGCCTTCGATAGAGCGA
TTCCTCCTCGGAGGATACTGGCTCCTACTACTGCCTTTTCTTGGTCTACT
TCTGACGTGTACAAGGCTTAAACGGACATCTTGGGGCCACAGCCTTTTGC
AACATCGCCTAGGTCCGATCCCCACTCAACTGTCCGCATGGATGAATACG
TTCACAGGAGGTGCAATCCCCACTTTCCTCAACCTGAAGTACGGCGAGAT
ATGGATAATGGCGACGTACGGCATCCTGCAATTAGCTTTCATGGTGTATT
GGACCATGAAGGAAGGTGCAGTGGGCGTCCGAACAACAGGAATTGCCTTC
GGAAAAGCCGCGCTTACCAATCTGATGATGACATTCTTACCAGTAAACAA
AACAACGGTGTGGGTGCGGCTGTTTGGCATTTCATTCGAGCGGTCCGTCA
AGTTTCACCGGCAGTTGTCGTATCTAGCGATGGCCACGATGACCATCCAT
CTTGTGTGCATGACGCCCAAGGGCCCCGTGTGGGACCGCACACCTCTCGC
CAGTGGCGTCGTCGTGGCCTACAGTCTCCTGGCTTTCCTTTCCTTTACAT
TTATGTCCTTGACGGCCATGCTCCGGCGGTGGTGCTATGAGCTGTTCCGG
TACGCACACTACCTTTACATCGCAGGTACTGCCTTTGTCTTGCTCCATGC
CCCGGAAGCTTGGCAATATTTAGTTATTCCTTGCGTTATACACATCGCGG
ACTTTTCCTGGCGATGGTATAACATCCTCCACAATCCTACTTGGGCCACA
CTTGCTGCCTTACCCGGTGACGTGACGCAGGTGGACGTCAGACACAGACA
GGAAAAACGCAGCCGCAGCAATGGCGGCGCAGATGGCATAGGCGGCGAGA
GCAAGTGGGCCTTACCCTTAGAGCCCGGAAGCTATGTCTGGGTCTGCATT
CCTCAATTGTCTCTACTACAATGGCATCTTATTTCCATATCAACAGCCGG
CTTGCTGCATGAAGGGGTGCAGTCGGAAGCGGAGGCGCCGCTCTTTCATC
TTCACATCAAGAGCCTGGGCAAGGGTACTTGGACCAATGGTCTTTACCAA
GTAGCTGCTCAAGGAGTCGTGCCCAAATAGAATCCCGGGTCTTCGAATCG
CTCGGTTTGCTGTGTGTACTGATTTTCAAAATACAGATCGCTGGCAAACT
CCCACAGTCACGGCGCGATGGCGAAGAACAAAAATGCCCCAAGCGCGCCG
CCCATGTCGCCGCCCACGTTGGCCGTTTTGGTGGATGGACCGTATGGCAG
GCTTTCGATTGACCTACAGCGATACCATCAGCTGGTGTTAGTAGCAGGAG
GAATCGGTCTCATGCCTTTGACTTCATTGTTGTCGTATATTAGCCATTGC
ATTCGCAAAGGCATGATGACTAGTCTCAAAAGTATTACCCTTGTGTGGGC
CTTACGGGATGTGGCCTTACTTGAAGGCTTCACCACCTTCCTGGATCAGA
TCAATGATGAGCTGAATAAGCATCTGATTGAGCAACAACAGTCACAGCAG
TCCTCACAGCGGCAGTGTGTCCACTTTGGTATGCATATTTACGTGACAGC
TGTCGGAGGAAATGTTGTGCACGGGGTGAATAGCATCGGAATAGAGGATG
AAAATAAGACCATGCACAAGGAAATAGGCGGTCGAATGCGCTTGGTGGAC
GGTGGGGGAGGAGGTCAGAAGGACTTTCGCGTACTGTACGGCAGGCCCAA
GATATTTTGGTAAATGATTTCGTTGAAGGTCAGTCCGCAGCTTCGACAGG
GGTCCTGGCCTGCGCACCTGAGGGATTGCTACACCAGATCCAACGTCAGT
GCGTGTTGCGCAATGTGGATGTTCATATAGAAGAGTTTCCTTACTAAAAA
GCACAAGGAAAATCATTTAAAACCGTCTTCCTATGATGAAGGAATATGAA
AGGCAAAGTGCTGCATGCATATGTGTCGATGTGAAAAAGCAAAGGCAACA
AAAACAAAGTGAACAAATCAGGCAGACAGGAATTTGTCATCTTTAGACAC
AAGAAAATTAGCGCGATGCGTCCATCAATAATTGTAAGGGCAAAATAT

Coding sequence (CDS) from alignment at scaffold_11:151522..154169-

>mRNA_5622 ID=mRNA_5622|Name=jgi.p|Nanoce1779_2|589773|organism=Nannochloropsis oceanica|type=CDS|length=1413bp|location=Sequence derived from alignment at scaffold_11:151522..154169- (Nannochloropsis oceanica)
ATGGTCACTTCACCGGCACACCAAGTCCTGCTCTTTGATTATGCCGCTGG
TGCAGCCCAAGCATTGGCGCTACGAGGCTATCAGGCAAGCGATTTGAAGG
AGATAAATATGTCCACAGTTGGTATGACGCCTATCTTGCTGCAAAGTGCA
GCTGGTAAGCTCTACATGCGGTACGATCAGTCGCTGGCTCGTGCGAGCGC
TCCTGTGGACCTCACTGGCACTACCAACTTTATGTGGGCCTGGGCCGAAT
CTGGCTACCCTGCGATTCACGACCGTCATGGAGCCATTAAAATAAACTGG
ATCGCAGGCACGTGCAAGCCTTCGATAGAGCGATTCCTCCTCGGAGGATA
CTGGCTCCTACTACTGCCTTTTCTTGGTCTACTTCTGACGTGTACAAGGC
TTAAACGGACATCTTGGGGCCACAGCCTTTTGCAACATCGCCTAGGTCCG
ATCCCCACTCAACTGTCCGCATGGATGAATACGTTCACAGGAGGTGCAAT
CCCCACTTTCCTCAACCTGAAGTACGGCGAGATATGGATAATGGCGACGT
ACGGCATCCTGCAATTAGCTTTCATGGTGTATTGGACCATGAAGGAAGGT
GCAGTGGGCGTCCGAACAACAGGAATTGCCTTCGGAAAAGCCGCGCTTAC
CAATCTGATGATGACATTCTTACCAGTAAACAAAACAACGGTGTGGGTGC
GGCTGTTTGGCATTTCATTCGAGCGGTCCGTCAAGTTTCACCGGCAGTTG
TCGTATCTAGCGATGGCCACGATGACCATCCATCTTGTGTGCATGACGCC
CAAGGGCCCCGTGTGGGACCGCACACCTCTCGCCAGTGGCGTCGTCGTGG
CCTACAGTCTCCTGGCTTTCCTTTCCTTTACATTTATGTCCTTGACGGCC
ATGCTCCGGCGGTGGTGCTATGAGCTGTTCCGGTACGCACACTACCTTTA
CATCGCAGGTACTGCCTTTGTCTTGCTCCATGCCCCGGAAGCTTGGCAAT
ATTTAGTTATTCCTTGCGTTATACACATCGCGGACTTTTCCTGGCGATGG
TATAACATCCTCCACAATCCTACTTGGGCCACACTTGCTGCCTTACCCGG
TGACGTGACGCAGGTGGACGTCAGACACAGACAGGAAAAACGCAGCCGCA
GCAATGGCGGCGCAGATGGCATAGGCGGCGAGAGCAAGTGGGCCTTACCC
TTAGAGCCCGGAAGCTATGTCTGGGTCTGCATTCCTCAATTGTCTCTACT
ACAATGGCATCTTATTTCCATATCAACAGCCGGCTTGCTGCATGAAGGGG
TGCAGTCGGAAGCGGAGGCGCCGCTCTTTCATCTTCACATCAAGAGCCTG
GGCAAGGGTACTTGGACCAATGGTCTTTACCAAGTAGCTGCTCAAGGAGT
CGTGCCCAAATAG

Synonyms

Publications