jgi.p|Nanoce1779_2|646950, mRNA_5621 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|646950
Unique Name	mRNA_5621
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	881
Alignment location	scaffold_11:151522..152402 -

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Properties


Property Name	Value
TranscriptId	647036
Track	FilteredModels2
ProteinId	646950

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:151522..152402 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|646950	gene_5621	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|646950	mRNA_5621-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5621	CDS_5621	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:151522..152402-
coding sequence from alignment at scaffold_11:151522..152402-

mRNA sequence

>mRNA_5621 ID=mRNA_5621|Name=jgi.p|Nanoce1779_2|646950|organism=Nannochloropsis oceanica|type=mRNA|length=881bp
ATGGCGAAGAACAAAAATGCCCCAAGCGCGCCGCCCATGTCGCCGCCCAC
GTTGGCCGTTTTGGTGGATGGACCGTATGGCAGGCTTTCGATTGACCTAC
AGCGATACCATCAGCTGGTGTTAGTAGCAGGAGGAATCGGTCTCATGCCT
TTGACTTCATTGTTGTCGTATATTAGCCATTGCATTCGCAAAGGCATGAT
GACTAGTCTCAAAAGTATTACCCTTGTGTGGGCCTTACGGGATGTGGCCT
TACTTGAAGGCTTCACCACCTTCCTGGATCAGATCAATGATGAGCTGAAT
AAGCATCTGATTGAGCAACAACAGTCACAGCAGTCCTCACAGCGGCAGTG
TGTCCACTTTGGTATGCATATTTACGTGACAGCTGTCGGAGGAAATGTTG
TGCACGGGGTGAATAGCATCGGAATAGAGGATGAAAATAAGACCATGCAC
AAGGAAATAGGCGGTCGAATGCGCTTGGTGGACGGTGGGGGAGGAGGTCA
GAAGGACTTTCGCGTACTGTACGGCAGGCCCAAGATATTTTGGTAAATGA
TTTCGTTGAAGGTCAGTCCGCAGCTTCGACAGGGGTCCTGGCCTGCGCAC
CTGAGGGATTGCTACACCAGATCCAACGTCAGTGCGTGTTGCGCAATGTG
GATGTTCATATAGAAGAGTTTCCTTACTAAAAAGCACAAGGAAAATCATT
TAAAACCGTCTTCCTATGATGAAGGAATATGAAAGGCAAAGTGCTGCATG
CATATGTGTCGATGTGAAAAAGCAAAGGCAACAAAAACAAAGTGAACAAA
TCAGGCAGACAGGAATTTGTCATCTTTAGACACAAGAAAATTAGCGCGAT
GCGTCCATCAATAATTGTAAGGGCAAAATAT

protein sequence of jgi.p|Nanoce1779_2|646950

>mRNA_5621-protein ID=mRNA_5621-protein|Name=jgi.p|Nanoce1779_2|646950|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MAKNKNAPSAPPMSPPTLAVLVDGPYGRLSIDLQRYHQLVLVAGGIGLMP
LTSLLSYISHCIRKGMMTSLKSITLVWALRDVALLEGFTTFLDQINDELN
KHLIEQQQSQQSSQRQCVHFGMHIYVTAVGGNVVHGVNSIGIEDENKTMH
KEIGGRMRLVDGGGGGQKDFRVLYGRPKIFW*

mRNA from alignment at scaffold_11:151522..152402-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5621 ID=mRNA_5621|Name=jgi.p|Nanoce1779_2|646950|organism=Nannochloropsis oceanica|type=mRNA|length=881bp|location=Sequence derived from alignment at scaffold_11:151522..152402- (Nannochloropsis oceanica)
ATGGCGAAGAACAAAAATGCCCCAAGCGCGCCGCCCATGTCGCCGCCCAC
GTTGGCCGTTTTGGTGGATGGACCGTATGGCAGGCTTTCGATTGACCTAC
AGCGATACCATCAGCTGGTGTTAGTAGCAGGAGGAATCGGTCTCATGCCT
TTGACTTCATTGTTGTCGTATATTAGCCATTGCATTCGCAAAGGCATGAT
GACTAGTCTCAAAAGTATTACCCTTGTGTGGGCCTTACGGGATGTGGCCT
TACTTGAAGGCTTCACCACCTTCCTGGATCAGATCAATGATGAGCTGAAT
AAGCATCTGATTGAGCAACAACAGTCACAGCAGTCCTCACAGCGGCAGTG
TGTCCACTTTGGTATGCATATTTACGTGACAGCTGTCGGAGGAAATGTTG
TGCACGGGGTGAATAGCATCGGAATAGAGGATGAAAATAAGACCATGCAC
AAGGAAATAGGCGGTCGAATGCGCTTGGTGGACGGTGGGGGAGGAGGTCA
GAAGGACTTTCGCGTACTGTACGGCAGGCCCAAGATATTTTGGTAAATGA
TTTCGTTGAAGGTCAGTCCGCAGCTTCGACAGGGGTCCTGGCCTGCGCAC
CTGAGGGATTGCTACACCAGATCCAACGTCAGTGCGTGTTGCGCAATGTG
GATGTTCATATAGAAGAGTTTCCTTACTAAAAAGCACAAGGAAAATCATT
TAAAACCGTCTTCCTATGATGAAGGAATATGAAAGGCAAAGTGCTGCATG
CATATGTGTCGATGTGAAAAAGCAAAGGCAACAAAAACAAAGTGAACAAA
TCAGGCAGACAGGAATTTGTCATCTTTAGACACAAGAAAATTAGCGCGAT
GCGTCCATCAATAATTGTAAGGGCAAAATAT

Coding sequence (CDS) from alignment at scaffold_11:151522..152402-

>mRNA_5621 ID=mRNA_5621|Name=jgi.p|Nanoce1779_2|646950|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_11:151522..152402- (Nannochloropsis oceanica)
ATGGCGAAGAACAAAAATGCCCCAAGCGCGCCGCCCATGTCGCCGCCCAC
GTTGGCCGTTTTGGTGGATGGACCGTATGGCAGGCTTTCGATTGACCTAC
AGCGATACCATCAGCTGGTGTTAGTAGCAGGAGGAATCGGTCTCATGCCT
TTGACTTCATTGTTGTCGTATATTAGCCATTGCATTCGCAAAGGCATGAT
GACTAGTCTCAAAAGTATTACCCTTGTGTGGGCCTTACGGGATGTGGCCT
TACTTGAAGGCTTCACCACCTTCCTGGATCAGATCAATGATGAGCTGAAT
AAGCATCTGATTGAGCAACAACAGTCACAGCAGTCCTCACAGCGGCAGTG
TGTCCACTTTGGTATGCATATTTACGTGACAGCTGTCGGAGGAAATGTTG
TGCACGGGGTGAATAGCATCGGAATAGAGGATGAAAATAAGACCATGCAC
AAGGAAATAGGCGGTCGAATGCGCTTGGTGGACGGTGGGGGAGGAGGTCA
GAAGGACTTTCGCGTACTGTACGGCAGGCCCAAGATATTTTGGTAA

Synonyms

Publications