jgi.p|Nanoce1779_2|577718, mRNA_562 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577718
Unique NamemRNA_562
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1412
Alignment locationscaffold_3:1364173..1365584 +

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Properties
Property NameValue
TranscriptId577804
TrackFilteredModels2
ProteinId577718
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1364173..1365584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577718gene_562Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577718mRNA_562-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_562CDS_562Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_562 ID=mRNA_562|Name=jgi.p|Nanoce1779_2|577718|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp
CAGCCTCTTCTCTCATGTGGTCCGCGCCGCCGCCGCCGTCCTTGCGAAGG
CGAATGCCCGCATCCCGGTTCGCGAACTCCTTTGGGAACAGCATCTGTCA
TGAGCCCGTGCAAGATCATGTCCAGGCCTTCCTCGCCCGCTACAAGTTGG
TGGTCTGCATGAATTTCTTCGTACTTTTTGCACTGTGCATCTGCAGTGGC
TTCTTCAGCAGCAGTAGCAGCAGCAGCAGCAGTCAGATGGGCAATTATAA
AGGTCCTGTCGGCAACAGCAAATCTTACCAGCCGTACATGGACTACCAAA
CAAAAACTACCACTATGCGACCTTCTTCCTCGTCACCCGCGGCAGCACGG
GGGCGGCTTCGTGGCCTGTCTCGTAGGGATAAGGGGGAGACACTGCACAA
AGCGTCAAGTTTGCACACTTATTCCTCATCGTCCTCACCGGGGGCAGCCA
CACATGTGCCACAGAGCCCTCCGCGTCGTTTTGTTCCGGGTACGCTGCCA
CAGGCTGAGGACAAGCCGGTTGTGGTCGCAACGAGTGCTGCAGCATCACC
CCCGCCGGCAGAGACAACCAGCATGCCCACGAAATCAACAACAGCAAGCA
AGACAGGAACCAGCAACGGTTCGAGCAAGAAAAAGGCCTTGCTAAGCAAT
CTGGTGTCCTCGACAAAACCTAACGCAGACTTGTTAATGACCATTGCGGA
GGATGAAAGGGAAGACATACCTGCAGCCCCGGCCTCAGCGGCAGTGGTAG
ACACCTTGAAAGATACTTTCGATGCACGCTTCATGTCGATCCACACCGTA
GGGAACGCAGCCCCTGTGCAGTGTACATTCAGTGAGGCTCTTGAGGGAGA
GAAAGCCATGCCTTCCGTTCATGCCGACCTCGGACTTGGTGTCGAAGAGG
GTGGTGACCAGAACGTCAGGGCAGCATTTACAAACTCTGAAGAGAAGAGA
GAGATAGCTGAAACCTGGAATGCATTTAAAGAAGCTGATGGAATCAACGT
CGATCATTCTGTCGCCTCTTTATGCCCCCTCACGCCATCACGGTCAGAAG
CTCAGGAAGAGCCTGCTGTTGAGGTGGAGGAAGTGGGTGTGTCACCAAAC
TCTCAAGTCATGGAAACTGAACAGTCGGGGCATACGGTAATGGCAATGGA
GGCAACAGAGAAGGAGTTAAAAGGGGAGCCAAGCCAGCAGATGGAAGAAA
AGGTGATTATGCAATTGCTGCACCGGCGCCATCCGCTTGACTTCATTCCC
CCCTTTGTCCGTGATGACATCGTTTGCATGAATACGCAGGGGGCTAAAAA
GGTATGAATGATGCAATCTTGTATTTGAGGATAAAGCCAAGCCAAGAGGT
ATGCCGAAATGAGTAAAACACCAAGCAAAAGGGAGAAGAAGCAATCAATA
TCCGCTTTTGTA
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protein sequence of jgi.p|Nanoce1779_2|577718

>mRNA_562-protein ID=mRNA_562-protein|Name=jgi.p|Nanoce1779_2|577718|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MWSAPPPPSLRRRMPASRFANSFGNSICHEPVQDHVQAFLARYKLVVCMN
FFVLFALCICSGFFSSSSSSSSSQMGNYKGPVGNSKSYQPYMDYQTKTTT
MRPSSSSPAAARGRLRGLSRRDKGETLHKASSLHTYSSSSSPGAATHVPQ
SPPRRFVPGTLPQAEDKPVVVATSAAASPPPAETTSMPTKSTTASKTGTS
NGSSKKKALLSNLVSSTKPNADLLMTIAEDEREDIPAAPASAAVVDTLKD
TFDARFMSIHTVGNAAPVQCTFSEALEGEKAMPSVHADLGLGVEEGGDQN
VRAAFTNSEEKREIAETWNAFKEADGINVDHSVASLCPLTPSRSEAQEEP
AVEVEEVGVSPNSQVMETEQSGHTVMAMEATEKELKGEPSQQMEEKVIMQ
LLHRRHPLDFIPPFVRDDIVCMNTQGAKKV*
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mRNA from alignment at scaffold_3:1364173..1365584+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_562 ID=mRNA_562|Name=jgi.p|Nanoce1779_2|577718|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp|location=Sequence derived from alignment at scaffold_3:1364173..1365584+ (Nannochloropsis oceanica)
CAGCCTCTTCTCTCATGTGGTCCGCGCCGCCGCCGCCGTCCTTGCGAAGG
CGAATGCCCGCATCCCGGTTCGCGAACTCCTTTGGGAACAGCATCTGTCA
TGAGCCCGTGCAAGATCATGTCCAGGCCTTCCTCGCCCGCTACAAGTTGG
TGGTCTGCATGAATTTCTTCGTACTTTTTGCACTGTGCATCTGCAGTGGC
TTCTTCAGCAGCAGTAGCAGCAGCAGCAGCAGTCAGATGGGCAATTATAA
AGGTCCTGTCGGCAACAGCAAATCTTACCAGCCGTACATGGACTACCAAA
CAAAAACTACCACTATGCGACCTTCTTCCTCGTCACCCGCGGCAGCACGG
GGGCGGCTTCGTGGCCTGTCTCGTAGGGATAAGGGGGAGACACTGCACAA
AGCGTCAAGTTTGCACACTTATTCCTCATCGTCCTCACCGGGGGCAGCCA
CACATGTGCCACAGAGCCCTCCGCGTCGTTTTGTTCCGGGTACGCTGCCA
CAGGCTGAGGACAAGCCGGTTGTGGTCGCAACGAGTGCTGCAGCATCACC
CCCGCCGGCAGAGACAACCAGCATGCCCACGAAATCAACAACAGCAAGCA
AGACAGGAACCAGCAACGGTTCGAGCAAGAAAAAGGCCTTGCTAAGCAAT
CTGGTGTCCTCGACAAAACCTAACGCAGACTTGTTAATGACCATTGCGGA
GGATGAAAGGGAAGACATACCTGCAGCCCCGGCCTCAGCGGCAGTGGTAG
ACACCTTGAAAGATACTTTCGATGCACGCTTCATGTCGATCCACACCGTA
GGGAACGCAGCCCCTGTGCAGTGTACATTCAGTGAGGCTCTTGAGGGAGA
GAAAGCCATGCCTTCCGTTCATGCCGACCTCGGACTTGGTGTCGAAGAGG
GTGGTGACCAGAACGTCAGGGCAGCATTTACAAACTCTGAAGAGAAGAGA
GAGATAGCTGAAACCTGGAATGCATTTAAAGAAGCTGATGGAATCAACGT
CGATCATTCTGTCGCCTCTTTATGCCCCCTCACGCCATCACGGTCAGAAG
CTCAGGAAGAGCCTGCTGTTGAGGTGGAGGAAGTGGGTGTGTCACCAAAC
TCTCAAGTCATGGAAACTGAACAGTCGGGGCATACGGTAATGGCAATGGA
GGCAACAGAGAAGGAGTTAAAAGGGGAGCCAAGCCAGCAGATGGAAGAAA
AGGTGATTATGCAATTGCTGCACCGGCGCCATCCGCTTGACTTCATTCCC
CCCTTTGTCCGTGATGACATCGTTTGCATGAATACGCAGGGGGCTAAAAA
GGTATGAATGATGCAATCTTGTATTTGAGGATAAAGCCAAGCCAAGAGGT
ATGCCGAAATGAGTAAAACACCAAGCAAAAGGGAGAAGAAGCAATCAATA
TCCGCTTTTGTA
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Coding sequence (CDS) from alignment at scaffold_3:1364173..1365584+

>mRNA_562 ID=mRNA_562|Name=jgi.p|Nanoce1779_2|577718|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at scaffold_3:1364173..1365584+ (Nannochloropsis oceanica)
ATGTGGTCCGCGCCGCCGCCGCCGTCCTTGCGAAGGCGAATGCCCGCATC
CCGGTTCGCGAACTCCTTTGGGAACAGCATCTGTCATGAGCCCGTGCAAG
ATCATGTCCAGGCCTTCCTCGCCCGCTACAAGTTGGTGGTCTGCATGAAT
TTCTTCGTACTTTTTGCACTGTGCATCTGCAGTGGCTTCTTCAGCAGCAG
TAGCAGCAGCAGCAGCAGTCAGATGGGCAATTATAAAGGTCCTGTCGGCA
ACAGCAAATCTTACCAGCCGTACATGGACTACCAAACAAAAACTACCACT
ATGCGACCTTCTTCCTCGTCACCCGCGGCAGCACGGGGGCGGCTTCGTGG
CCTGTCTCGTAGGGATAAGGGGGAGACACTGCACAAAGCGTCAAGTTTGC
ACACTTATTCCTCATCGTCCTCACCGGGGGCAGCCACACATGTGCCACAG
AGCCCTCCGCGTCGTTTTGTTCCGGGTACGCTGCCACAGGCTGAGGACAA
GCCGGTTGTGGTCGCAACGAGTGCTGCAGCATCACCCCCGCCGGCAGAGA
CAACCAGCATGCCCACGAAATCAACAACAGCAAGCAAGACAGGAACCAGC
AACGGTTCGAGCAAGAAAAAGGCCTTGCTAAGCAATCTGGTGTCCTCGAC
AAAACCTAACGCAGACTTGTTAATGACCATTGCGGAGGATGAAAGGGAAG
ACATACCTGCAGCCCCGGCCTCAGCGGCAGTGGTAGACACCTTGAAAGAT
ACTTTCGATGCACGCTTCATGTCGATCCACACCGTAGGGAACGCAGCCCC
TGTGCAGTGTACATTCAGTGAGGCTCTTGAGGGAGAGAAAGCCATGCCTT
CCGTTCATGCCGACCTCGGACTTGGTGTCGAAGAGGGTGGTGACCAGAAC
GTCAGGGCAGCATTTACAAACTCTGAAGAGAAGAGAGAGATAGCTGAAAC
CTGGAATGCATTTAAAGAAGCTGATGGAATCAACGTCGATCATTCTGTCG
CCTCTTTATGCCCCCTCACGCCATCACGGTCAGAAGCTCAGGAAGAGCCT
GCTGTTGAGGTGGAGGAAGTGGGTGTGTCACCAAACTCTCAAGTCATGGA
AACTGAACAGTCGGGGCATACGGTAATGGCAATGGAGGCAACAGAGAAGG
AGTTAAAAGGGGAGCCAAGCCAGCAGATGGAAGAAAAGGTGATTATGCAA
TTGCTGCACCGGCGCCATCCGCTTGACTTCATTCCCCCCTTTGTCCGTGA
TGACATCGTTTGCATGAATACGCAGGGGGCTAAAAAGGTATGA
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Synonyms
Publications