jgi.p|Nanoce1779_2|589765, mRNA_5619 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589765
Unique NamemRNA_5619
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length221
Alignment locationscaffold_11:141044..141264 -

Link to JBrowse

Properties
Property NameValue
TranscriptId589851
TrackFilteredModels2
ProteinId589765
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:141044..141264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589765gene_5619Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589765mRNA_5619-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5619CDS_5619Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5619 ID=mRNA_5619|Name=jgi.p|Nanoce1779_2|589765|organism=Nannochloropsis oceanica|type=mRNA|length=221bp
ATGCAGGCCAAGGGGTTTTTCCATGTTGGGAGGGGCTGGGCTGCTATCGC
TTTCGGGCTTGGAGGTATTCTGAAGAAGGCTGTTTTCTCGGCCCGGGGCA
TGCAGGCCAAGGGGTTTTTCCATGTTGGGAGGGGCTGGGCTGCTATCGCT
TTCGGGCTTGGAGGTATCATGAAGAGAGCATTTTTCTTGGTCTAGGGCAT
GAAGACCGAGGGGGGTTCTCG
back to top

protein sequence of jgi.p|Nanoce1779_2|589765

>mRNA_5619-protein ID=mRNA_5619-protein|Name=jgi.p|Nanoce1779_2|589765|organism=Nannochloropsis oceanica|type=polypeptide|length=65bp
MQAKGFFHVGRGWAAIAFGLGGILKKAVFSARGMQAKGFFHVGRGWAAIA
FGLGGIMKRAFFLV*
back to top

mRNA from alignment at scaffold_11:141044..141264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5619 ID=mRNA_5619|Name=jgi.p|Nanoce1779_2|589765|organism=Nannochloropsis oceanica|type=mRNA|length=221bp|location=Sequence derived from alignment at scaffold_11:141044..141264- (Nannochloropsis oceanica)
ATGCAGGCCAAGGGGTTTTTCCATGTTGGGAGGGGCTGGGCTGCTATCGC TTTCGGGCTTGGAGGTATTCTGAAGAAGGCTGTTTTCTCGGCCCGGGGCA TGCAGGCCAAGGGGTTTTTCCATGTTGGGAGGGGCTGGGCTGCTATCGCT TTCGGGCTTGGAGGTATCATGAAGAGAGCATTTTTCTTGGTCTAGGGCAT GAAGACCGAGGGGGGTTCTCG
back to top

Coding sequence (CDS) from alignment at scaffold_11:141044..141264-

>mRNA_5619 ID=mRNA_5619|Name=jgi.p|Nanoce1779_2|589765|organism=Nannochloropsis oceanica|type=CDS|length=195bp|location=Sequence derived from alignment at scaffold_11:141044..141264- (Nannochloropsis oceanica)
ATGCAGGCCAAGGGGTTTTTCCATGTTGGGAGGGGCTGGGCTGCTATCGC
TTTCGGGCTTGGAGGTATTCTGAAGAAGGCTGTTTTCTCGGCCCGGGGCA
TGCAGGCCAAGGGGTTTTTCCATGTTGGGAGGGGCTGGGCTGCTATCGCT
TTCGGGCTTGGAGGTATCATGAAGAGAGCATTTTTCTTGGTCTAG
back to top
Synonyms
Publications