jgi.p|Nanoce1779_2|589755, mRNA_5617 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589755
Unique Name	mRNA_5617
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1934
Alignment location	scaffold_11:131237..134222 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589841
Track	FilteredModels2
ProteinId	589755

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:131237..134222 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589755	gene_5617	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589755	mRNA_5617-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5617	CDS_5617	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:131237..134222+
coding sequence from alignment at scaffold_11:131237..134222+

mRNA sequence

>mRNA_5617 ID=mRNA_5617|Name=jgi.p|Nanoce1779_2|589755|organism=Nannochloropsis oceanica|type=mRNA|length=1934bp
AGCGAGCTCTTGGATTATGCATCAAAATGAATCTATGTGATACCCCAGTG
GTGTGCGAAACATGAAGTGTATTTCCAAGCACGTATATTGCCTTGTGCCT
GTGCTGGTTGACGTAACCTTATTGCATCCCAAAAAGGTAAAGGGTAAAGG
GGCGGCGTTTGTCACGGCGCGAATGACGACGCAGAAGTATGTCGTCGAAA
TGACCCGTGCCCCCTTGCTTGCCCCGGGAACTGAGCCTCTGATTGGTACT
CGACGTTGGTCCTTCACGCGGATTGATAGTTGAATGTCCTGGTGCATAAG
TGCTGCTGCATCCTTTTTGTTGCGTCCCTGCGAAAGTGCAATGAACCGCT
CACCATCTTTTGAAATCGTTTTCACCACACACACTCATAGACTCATAGAC
ACATAGACACCTACATATATTTAGGCTGGCGTTTTTCCCAGGGCAAAATG
GCTCTGACTGGCAGCTGCAGCCATAATACTAGGAGCACCAGTTGCGGCAC
ATGCGGTGGAAGAAGAAGAAGTAGATGTCAACGTAGAGGGGCGGCGGGAG
AACTTTGGTCTTACGTCGCCTTGCTCCCTCTCTTCTTGTCTATCAACTTC
TCTTTTCTTACAACACCATCCGCAATGGCTGCTGAGGTCGAACGAGGGGA
CACAAGAACGTACACAGAGCAAAACGCCGGCGAAGGCATGCAGGCCTTTA
CCCTCGCTCCCTCTCTCACTGTTCGCGTGGGCATGGACCCTTTTTTCCTT
CAGATTGAGAAGACGCATCGTCCCTCCTCCCCTCCTTTGGTGCTTCAGAC
CGTGCTTTCGCGACGGGGCCGGCTAGGGTACGGCGTGTGGGTGGGTGCTG
ATGTGACCGATGCGATCTACGAAGGGTACTCATGGCGCGTGGGGACAGTG
GTGAAGTGGTGGCATGCGACACATGTCTTAAGTGCTCGTCTCATTGACCA
TGGCATGAGCGAGGAGGGGAGCAGCACCCTTCCCTTCCCCCTGCCCTCTC
TCTCCCTCACCCTCGCCACTTCCGATCCACTGCGGGGGGAGATAGACGTA
TCACTCTTCCTCCCTCCCGATGCCAGTGAGGCTTCCGTGCTGGCCATAAA
TATGACTGCGCGAGGAGGTGACGGAGGGAGGGAGGGAAGGACGTGCTAGG
GTATTGTTTACTTTCTTGTCTCCCTGTGCTTCCCTTTTGATACTGGCGCA
AATATGAAAATATACTGCACGTGTGTGTCTATGTATAGTGTACGATATAT
GTCAACAGCCGAGTGGATTCCTCCTGCCTCCCTTTTTCCCTCTCCACTTG
ATGCATGACTTCATTTCCTCGTTCTTCCTTTACCGACCTGTACATTATGT
TGATGAAATTATAAGAATTATTACTATTATTATTATATATACGTATACAT
ACATGTCTTCCACCTCCTTCTCCCACCTCCTTCCTCACACAGGCAGCAGC
ACGCTCGTGGCAAACCGGCTAGGCATGGCCTGGGCGATTGAGGAAGCGAT
GGAGGGCGGGGTAGAGGAAGGGCTCTTTGGCTTCGGGGAGCGGTTCGCCG
GCACCACCAACAAACGAGGACACGAGCTATACTGCTGGGCGGAGGATGGA
TCGTGGGTGCTGGGGAAGGAAGTGCGTCTCCCGAAGGAGAGATCGACCTA
CGTGCCCATTCCCTTCCTCCTCTCCTCCCGGGGCTACGGCCTCCTCCTCA
ATACAACTTACCGCTCCGACTGGCGCTTGGACAGTAAGGAGCAACGGAGA
GAGTACCAGAGGAAGGAGGGGGAAAGTGAGGGGGGGGTGTCGGCGGCGAT
GGAGGAGGGAAGAGGGGAGGGAGGGGTGGTAAGGGAAGAGAGGATGAGGA
GGATAAGAAGTGTCTTGTCTCCCCCAAATGGAATAGAGGAGGACGAGGAG
GAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG

protein sequence of jgi.p|Nanoce1779_2|589755

>mRNA_5617-protein ID=mRNA_5617-protein|Name=jgi.p|Nanoce1779_2|589755|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MALTGSCSHNTRSTSCGTCGGRRRSRCQRRGAAGELWSYVALLPLFLSIN
FSFLTTPSAMAAEVERGDTRTYTEQNAGEGMQAFTLAPSLTVRVGMDPFF
LQIEKTHRPSSPPLVLQTVLSRRGRLGYGVWVGADVTDAIYEGYSWRVGT
VVKWWHATHVLSARLIDHGMSEEGSSTLPFPLPSLSLTLATSDPLRGEID
VSLFLPPDASEASVLAINMTARGGDGGREGRTC*

mRNA from alignment at scaffold_11:131237..134222+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5617 ID=mRNA_5617|Name=jgi.p|Nanoce1779_2|589755|organism=Nannochloropsis oceanica|type=mRNA|length=2986bp|location=Sequence derived from alignment at scaffold_11:131237..134222+ (Nannochloropsis oceanica)
AGCGAGCTCTTGGATTATGCATCAAAATGAATCTATGTGATACCCCAGTG
GTGTGCGAAACATGAAGTGTATTTCCAAGCACGTATATTGCCTTGTGCCT
GTGCTGGTTGACGTAACCTTATTGCATCCCAAAAAGGTAAAGGGTAAAGG
GGCGGCGTTTGTCACGGCGCGAATGACGACGCAGAAGTATGTCGTCGAAA
TGACCCGTGCCCCCTTGCTTGCCCCGGGAACTGAGCCTCTGATTGGTACT
CGACGTTGGTCCTTCACGCGGATTGATAGTTGAATGTCCTGGTGCATAAG
TGCTGCTGCATCCTTTTTGTTGCGTCCCTGCGAAAGTGCAATGAACCGCT
CACCATCTTTTGAAATCGTTTTCACCACACACACTCATAGACTCATAGAC
ACATAGACACCTACATATATTTAGGCTGGCGTTTTTCCCAGGGCAAAATG
GCTCTGACTGGCAGCTGCAGCCATAATACTAGGAGCACCAGTTGCGGCAC
ATGCGGTGGAAGAAGAAGAAGTAGATGTCAACGTAGAGGGGCGGCGGGAG
AACTTTGGTCTTACGTCGCCTTGCTCCCTCTCTTCTTGTCTATCAACTTC
TCTTTTCTTACAACACCATCCGCAATGGCTGCTGAGGTCGAACGAGGGGT
AAGTTCAGGTCAGGCATACAGCCCTTTTGATTCTCTCCCCATGTCCTTCA
ATCCTCCCCCTTCGCGCTACTGCTGATGCCCTCTTAATGCGGCCCTCTCT
ACTTATCCAGGACACAAGAACGTACACAGAGCAAAACGCCGGCGAAGGCA
TGCAGGCCTTTACCCTCGCTCCCTCTCTCACTGTTCGCGTGGGCATGGAC
CCTTTTTTCCTTCAGATTGAGAAGACGCATCGTCCCTCCTCCCCTCCTTT
GGTGCTTCAGACCGTGCTTTCGCGACGGTAGGTTAATCCACAGGCAATGC
TCCGTCAACGATTGAATAACTACGATCGATCTAACATTTATTTTAAATTC
GCGCGGGCATTTCGTCTTTATTGAGGTTTAGAAGGCAGAATCCTTGAGTA
CTTTATTATTCACACGCGCTGTCAAATACCTGCCCAGGTGCAGATATGGA
TGATGGGGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGATGAAGGCGATATGTTCATCGATCCGTGCATTCAATGC
GTGTATTTTAACTCTTATCGAAAGCGAGCCGTCACTTCATCCCGTTCCTC
ATCCCGCCTCGCGTCGCCTATTTTAATCTTCTTTTATCTATTCTTTTTCT
TGTCTTTTGGGAGCGCCCTGCGCCTCGACACCCACACTGCCTTCCCATTA
TATCACAATCCCCAGGGGCCGGCTAGGGTACGGCGTGTGGGTGGGTGCTG
ATGTGACCGATGCGATCTACGAAGGTGAGGAAAACAGAGGGAAGGAGGGA
GGTGGGGAAGGTAGGAAAGAAAGAAGGAAGCATAAAAAGGAGATTCGTTC
TTTGTTTTACCGGGAAATTGATTGGGACGAGGACGTACACACACAGGGTA
CTCATGGCGCGTGGGGACAGTGGTGAAGTGGTGGCATGCGACACATGTAT
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTCAAGGCT
TGGCTATATATGGACCGGCTTCTAATACCCGCCTCGTCCTTCTCCCATCA
TTGCCCTCCTTCCCACCCTCCTTCTTACTCTCCCTTCCTCTCTCCCTACC
TGCAGGTCTTAAGTGCTCGTCTCATTGACCATGGCATGAGCGAGGAGGGG
AGCAGCACCCTTCCCTTCCCCCTGCCCTCTCTCTCCCTCACCCTCGCCAC
TTCCGATCCACTGCGGGGGGAGATAGACGTATCACTCTTCCTCCCTCCCG
ATGCCAGTGAGGCTTCCGTGCTGGCCATAAATATGACTGCGCGAGGAGGT
GACGGAGGGAGGGAGGGAAGGACGTGCTAGGGTATTGTTTACTTTCTTGT
CTCCCTGTGCTTCCCTTTTGATACTGGCGCAAATATGAAAATATACTGCA
CGTGTGTGTCTATGTATAGTGTACGATATATGTCAACAGCCGAGTGGATT
CCTCCTGCCTCCCTTTTTCCCTCTCCACTTGATGCATGACTTCATTTCCT
CGTTCTTCCTTTACCGACCTGTACATTATGTTGATGAAATTATAAGAATT
ATTACTATTATTATTATATATACGTATACATACATGTCTTCCACCTCCTT
CTCCCACCTCCTTCCTCACACAGGCAGCAGCACGCTCGTGGCAAACCGGC
TAGGCATGGCCTGGGCGATTGAGGAAGCGATGGAGGGCGGGGTAGAGGAA
GGGCTCTTTGGCTTCGGGGAGCGGTGAGGAGGGGGGGGAGGGAGGAAGGG
AGGGAGGGAGGGGCGGACATCTATCCATTGGCCCATGTATCCACTCCTTC
CCCCCTCCCCCCCTCCCTCCCTCCCTCCTCAGGTTCGCCGGCACCACCAA
CAAACGAGGACACGAGCTATACTGCTGGGCGGAGGATGGATCGTGGGTGC
TGGGGAAGGAAGTGCGTCTCCCGAAGGAGAGATCGACCTGTAAGGAGGGA
GTGAGGGGGGGAGGGAGGGGGGAGAGGGGGGAGACTTTGTCTTCTCTGGC
CATCCCCACCATTTTGAAAACCCCCCTCCCTCCCTCCCTCCCTCCCTCCA
GACGTGCCCATTCCCTTCCTCCTCTCCTCCCGGGGCTACGGCCTCCTCCT
CAATACAACTTACCGCTCCGACTGGCGCTTGGACAGTAAGGAGCAACGGA
GAGAGTACCAGAGGAAGGAGGGGGAAAGTGAGGGGGGGGTGTCGGCGGCG
ATGGAGGAGGGAAGAGGGGAGGGAGGGGTGGTAAGGGAAGAGAGGATGAG
GAGGATAAGAAGTGTCTTGTCTCCCCCAAATGGAATAGAGGAGGACGAGG
AGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGG

Coding sequence (CDS) from alignment at scaffold_11:131237..134222+

>mRNA_5617 ID=mRNA_5617|Name=jgi.p|Nanoce1779_2|589755|organism=Nannochloropsis oceanica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_11:131237..134222+ (Nannochloropsis oceanica)
ATGGCTCTGACTGGCAGCTGCAGCCATAATACTAGGAGCACCAGTTGCGG
CACATGCGGTGGAAGAAGAAGAAGTAGATGTCAACGTAGAGGGGCGGCGG
GAGAACTTTGGTCTTACGTCGCCTTGCTCCCTCTCTTCTTGTCTATCAAC
TTCTCTTTTCTTACAACACCATCCGCAATGGCTGCTGAGGTCGAACGAGG
GGACACAAGAACGTACACAGAGCAAAACGCCGGCGAAGGCATGCAGGCCT
TTACCCTCGCTCCCTCTCTCACTGTTCGCGTGGGCATGGACCCTTTTTTC
CTTCAGATTGAGAAGACGCATCGTCCCTCCTCCCCTCCTTTGGTGCTTCA
GACCGTGCTTTCGCGACGGGGCCGGCTAGGGTACGGCGTGTGGGTGGGTG
CTGATGTGACCGATGCGATCTACGAAGGGTACTCATGGCGCGTGGGGACA
GTGGTGAAGTGGTGGCATGCGACACATGTCTTAAGTGCTCGTCTCATTGA
CCATGGCATGAGCGAGGAGGGGAGCAGCACCCTTCCCTTCCCCCTGCCCT
CTCTCTCCCTCACCCTCGCCACTTCCGATCCACTGCGGGGGGAGATAGAC
GTATCACTCTTCCTCCCTCCCGATGCCAGTGAGGCTTCCGTGCTGGCCAT
AAATATGACTGCGCGAGGAGGTGACGGAGGGAGGGAGGGAAGGACGTGCT
AGATGGCTCTGACTGGCAGCTGCAGCCATAATACTAGGAGCACCAGTTGC
GGCACATGCGGTGGAAGAAGAAGAAGTAGATGTCAACGTAGAGGGGCGGC
GGGAGAACTTTGGTCTTACGTCGCCTTGCTCCCTCTCTTCTTGTCTATCA
ACTTCTCTTTTCTTACAACACCATCCGCAATGGCTGCTGAGGTCGAACGA
GGGGACACAAGAACGTACACAGAGCAAAACGCCGGCGAAGGCATGCAGGC
CTTTACCCTCGCTCCCTCTCTCACTGTTCGCGTGGGCATGGACCCTTTTT
TCCTTCAGATTGAGAAGACGCATCGTCCCTCCTCCCCTCCTTTGGTGCTT
CAGACCGTGCTTTCGCGACGGGGCCGGCTAGGGTACGGCGTGTGGGTGGG
TGCTGATGTGACCGATGCGATCTACGAAGGGTACTCATGGCGCGTGGGGA
CAGTGGTGAAGTGGTGGCATGCGACACATGTCTTAAGTGCTCGTCTCATT
GACCATGGCATGAGCGAGGAGGGGAGCAGCACCCTTCCCTTCCCCCTGCC
CTCTCTCTCCCTCACCCTCGCCACTTCCGATCCACTGCGGGGGGAGATAG
ACGTATCACTCTTCCTCCCTCCCGATGCCAGTGAGGCTTCCGTGCTGGCC
ATAAATATGACTGCGCGAGGAGGTGACGGAGGGAGGGAGGGAAGGACGTG
CTAGATGGCTCTGACTGGCAGCTGCAGCCATAATACTAGGAGCACCAGTT
GCGGCACATGCGGTGGAAGAAGAAGAAGTAGATGTCAACGTAGAGGGGCG
GCGGGAGAACTTTGGTCTTACGTCGCCTTGCTCCCTCTCTTCTTGTCTAT
CAACTTCTCTTTTCTTACAACACCATCCGCAATGGCTGCTGAGGTCGAAC
GAGGGGACACAAGAACGTACACAGAGCAAAACGCCGGCGAAGGCATGCAG
GCCTTTACCCTCGCTCCCTCTCTCACTGTTCGCGTGGGCATGGACCCTTT
TTTCCTTCAGATTGAGAAGACGCATCGTCCCTCCTCCCCTCCTTTGGTGC
TTCAGACCGTGCTTTCGCGACGGGGCCGGCTAGGGTACGGCGTGTGGGTG
GGTGCTGATGTGACCGATGCGATCTACGAAGGGTACTCATGGCGCGTGGG
GACAGTGGTGAAGTGGTGGCATGCGACACATGTCTTAAGTGCTCGTCTCA
TTGACCATGGCATGAGCGAGGAGGGGAGCAGCACCCTTCCCTTCCCCCTG
CCCTCTCTCTCCCTCACCCTCGCCACTTCCGATCCACTGCGGGGGGAGAT
AGACGTATCACTCTTCCTCCCTCCCGATGCCAGTGAGGCTTCCGTGCTGG
CCATAAATATGACTGCGCGAGGAGGTGACGGAGGGAGGGAGGGAAGGACG
TGCTAGATGGCTCTGACTGGCAGCTGCAGCCATAATACTAGGAGCACCAG
TTGCGGCACATGCGGTGGAAGAAGAAGAAGTAGATGTCAACGTAGAGGGG
CGGCGGGAGAACTTTGGTCTTACGTCGCCTTGCTCCCTCTCTTCTTGTCT
ATCAACTTCTCTTTTCTTACAACACCATCCGCAATGGCTGCTGAGGTCGA
ACGAGGGGACACAAGAACGTACACAGAGCAAAACGCCGGCGAAGGCATGC
AGGCCTTTACCCTCGCTCCCTCTCTCACTGTTCGCGTGGGCATGGACCCT
TTTTTCCTTCAGATTGAGAAGACGCATCGTCCCTCCTCCCCTCCTTTGGT
GCTTCAGACCGTGCTTTCGCGACGGGGCCGGCTAGGGTACGGCGTGTGGG
TGGGTGCTGATGTGACCGATGCGATCTACGAAGGGTACTCATGGCGCGTG
GGGACAGTGGTGAAGTGGTGGCATGCGACACATGTCTTAAGTGCTCGTCT
CATTGACCATGGCATGAGCGAGGAGGGGAGCAGCACCCTTCCCTTCCCCC
TGCCCTCTCTCTCCCTCACCCTCGCCACTTCCGATCCACTGCGGGGGGAG
ATAGACGTATCACTCTTCCTCCCTCCCGATGCCAGTGAGGCTTCCGTGCT
GGCCATAAATATGACTGCGCGAGGAGGTGACGGAGGGAGGGAGGGAAGGA
CGTGCTAGATGGCTCTGACTGGCAGCTGCAGCCATAATACTAGGAGCACC
AGTTGCGGCACATGCGGTGGAAGAAGAAGAAGTAGATGTCAACGTAGAGG
GGCGGCGGGAGAACTTTGGTCTTACGTCGCCTTGCTCCCTCTCTTCTTGT
CTATCAACTTCTCTTTTCTTACAACACCATCCGCAATGGCTGCTGAGGTC
GAACGAGGGGACACAAGAACGTACACAGAGCAAAACGCCGGCGAAGGCAT
GCAGGCCTTTACCCTCGCTCCCTCTCTCACTGTTCGCGTGGGCATGGACC
CTTTTTTCCTTCAGATTGAGAAGACGCATCGTCCCTCCTCCCCTCCTTTG
GTGCTTCAGACCGTGCTTTCGCGACGGGGCCGGCTAGGGTACGGCGTGTG
GGTGGGTGCTGATGTGACCGATGCGATCTACGAAGGGTACTCATGGCGCG
TGGGGACAGTGGTGAAGTGGTGGCATGCGACACATGTCTTAAGTGCTCGT
CTCATTGACCATGGCATGAGCGAGGAGGGGAGCAGCACCCTTCCCTTCCC
CCTGCCCTCTCTCTCCCTCACCCTCGCCACTTCCGATCCACTGCGGGGGG
AGATAGACGTATCACTCTTCCTCCCTCCCGATGCCAGTGAGGCTTCCGTG
CTGGCCATAAATATGACTGCGCGAGGAGGTGACGGAGGGAGGGAGGGAAG
GACGTGCTAG

Synonyms

Publications