jgi.p|Nanoce1779_2|589739, mRNA_5614 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589739
Unique Name	mRNA_5614
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	882
Alignment location	scaffold_11:119986..122380 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589825
Track	FilteredModels2
ProteinId	589739

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:119986..122380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589739	gene_5614	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589739	mRNA_5614-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5614	CDS_5614	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:119986..122380+
coding sequence from alignment at scaffold_11:119986..122380+

mRNA sequence

>mRNA_5614 ID=mRNA_5614|Name=jgi.p|Nanoce1779_2|589739|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ACAGCCTATCGAACCTATCCCAAGATGTTTGCCCGTCGTGCCATCAGCAG
CTTGGGTTCCAAATTGGCGCAACGCCAACCTGCTGCCATGGCTGCCGTCA
AGCACGCCGTACGAGCCGCCCCTGCCCATGCGAGTGCTGCTGGTTTCTCC
TCCATTTCAGAGCCATCGTATCTAGGTCGACCCTACAAAGATATCCCCAC
CAGCATCGGGGAGAAAGGCACGGCGCAAACGGCATGGGAGAAGAGCTGTT
ACTTCAAGATCGACTTCAAGATCACGGAGGACGCCATGATGTACGAGGCT
GTCCAACGCTTCGCCGCCTACAACATCGGTGCCTTGGCCGTGACCGACAG
CGCGGGGAAAGTGATCGGCGTCATCTCTGAGCGAGACTACGTCTGCAAGA
TCGCCTTATTGGGTCGGTCTTCCAAGAGCACCACGGTGGGGGAAATCTGC
ACCCGCGGGAGCAACATTGTTGTGGCTAAGACGACAGACACGATCGCCAC
GTGCATGAAGAAGATGCTAGCGAAGGACATTCGACATTTGCCCGTGGTGG
ATGATGAGAAGAAGGAGGTGGTGGGCATGCTCTCTATCAAGGACCTGATC
AAGGAGCTTCAGAAGGAGAAAGACGACATTATCGAGAAACTCACAGACTT
TAATCTGGGCAAGGGGGCTTTCTTCCAGCATGGATAACCAAGCCTTAGGT
CTGAGTAGAAAATGAACGGACGTAGGGAGGGAGGGACGGAGGGAGGAAGT
GTCGTCAAGTGGTTGAATGGCAGGTGGCCTTGCTTTTTCACGGTGGCATA
GTCATGCTCATTCTATTAAAGAAAAAGAGAGAGAAGGAGGAGGAGGAGGA
GGAGGAAGAGGAGGAGGAGAAGGAGGAGGAGA

protein sequence of jgi.p|Nanoce1779_2|589739

>mRNA_5614-protein ID=mRNA_5614-protein|Name=jgi.p|Nanoce1779_2|589739|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MFARRAISSLGSKLAQRQPAAMAAVKHAVRAAPAHASAAGFSSISEPSYL
GRPYKDIPTSIGEKGTAQTAWEKSCYFKIDFKITEDAMMYEAVQRFAAYN
IGALAVTDSAGKVIGVISERDYVCKIALLGRSSKSTTVGEICTRGSNIVV
AKTTDTIATCMKKMLAKDIRHLPVVDDEKKEVVGMLSIKDLIKELQKEKD
DIIEKLTDFNLGKGAFFQHG*

mRNA from alignment at scaffold_11:119986..122380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5614 ID=mRNA_5614|Name=jgi.p|Nanoce1779_2|589739|organism=Nannochloropsis oceanica|type=mRNA|length=2395bp|location=Sequence derived from alignment at scaffold_11:119986..122380+ (Nannochloropsis oceanica)
ACAGCCTATCGAACCTATCCCAAGATGTTTGCCCGTCGTGCCATCAGCAG
CTTGGGTTCCAAATTGGCGCAACGCCAACCTGCTGCCATGGCTGCCGTCA
AGCACGTAAGTCTCGATGCCCCATGTCTTGATTGTCTCCTTCTCTCTCGC
TCTTGCACACCTCTGTGCAGCATGCTTGCGTGCCCCCCATCCCTAGTTGC
CCCCCCTCCCTCCCTTCCTCCTCTCCGCCTCAGCTTCCTTCCTCCTTTCA
AAAGATTCTCACGCTTGTACGCACGTCACCTCACAGGCCGTACGAGCCGC
CCCTGCCCATGCGAGTGCTGCTGGTTTCTCCTCCATTTCAGAGCCATCGT
ATCTAGGTCGACCCTACAAAGATATCCCCACCAGCATCGGGGAGAAAGGT
GAGGAGGAGGGAGGGAAGGAGGACGGGAAAGAAGGAGTGCGAGTGGAAGA
GCTGGCACTAGAATGTGGCTGATATCGTGTCTGTTGTAGTTATGAGAGCT
ATTTGCGCGCTTCTTGTTCCTTGTCTCGAAGCTGGTGGTGCGTCTCCTTA
CATGTACTCCTCCCTCCCCTCCCTCCCTCCCTCCATTCCTCCTTTCTCTC
GCCCTGGCCCAGGCACGGCGCAAACGGCATGGGAGAAGAGCTGTTACTTC
AAGATCGACTTCAAGATCACGGAGGACGCCATGATGTACGAGGCTGTCCA
ACGGTGAGTGGGAAGGGAGGGAGGGAGGGAAGGACGGAGGGGGTCTGTAA
CAATGTGTTTTGGAGTTCGGCCGTTGGTTCAAATCGAAATTCGTCCTTTA
TGTACTTACTACTTACCGTTGTCGTTCAATTCTCATTTTTAAAATGTGTA
TTATTATTATTATTATAATTATTTTTATAATTATTATTATTATTACTACT
ACTACTACTATATTTCTCCGTCTCCTTTCCCACTCACACCCCTCCCTCCC
CCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCAGCTTCGCCGCCTA
CAACATCGGTGCCTTGGCCGTGACCGACAGCGCGGGGAAAGTGATCGGCG
TCATCTCTGAGCGAGACTACGTCTGCAAGGTAGGAAAAGAGGGAAGGCAG
TAACGAGGGAGGGAGAGAAGGAAGGAGGAAGGCATGGAGGAACGCGAGAG
GAAGAGCAGAGAGAGCTTGGAGACAGGAAGAGGTGAACAGGCATGTAACA
ATCGCATCTCACTACTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCA
TGTAGATCGCCTTATTGGGTCGGTCTTCCAAGAGCACCACGGTGGGGGAA
ATCTGCACCCGCGGGAGCAACATTGTTGTGGCTAAGACGACAGACACGTA
GGGAGGGAGGGAGGGAGGGAGGGAGGAAAGGCTGGGTGGATCTCAACCTT
GAAGCAGGTTCTTTGCTCACTCGAGCTATCTCTTCCATGTTGTGTATGTC
ACTCTCTCCCTCCTTCCCTCCCTCCCTCTATTCTCCTTCAGGATCGCCAC
GTGCATGAAGAAGATGCTAGCGAAGGACATTCGACATTTGCCCGTGGTGG
ATGATGAGAAGAAGGAGGTGGTGGGCATGCTCTCTATCAAGGTAGGGAGG
GAGGGAGGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGCAGATGGCTCGC
ACCCTCGTCTGTGAATGTGGGAATGATGTGTGTTTGTATCTATGTAGAAA
CGCATGCGTTTGTACCTCCTTATATTTCTATTTATGCGTGATGTAATCGC
GTGGATATGTCTTTCTGTCTTGTTTGTGTTTTCCATCGGTCTACCTCGTC
CTTCCTCCCGTTGATCTCCCTCCGACTCACCTTCCCCTCCCTCCCATCAA
GGATCGAATGAATCACTCTCACATCCCTCGAACCATCCCTCCCTCCCTCC
CTCCCTTCCCCAGGACCTGATCAAGGATCGAATGAATCACTCTCACATCC
CTCGAACCCCCCCTCCCTCCCTCCCTCCCTTCCCCAGGACCTGATCAAGG
AGCTTCAGAAGGAGAAAGACGACATTATCGAGAAACTCACAGACTTTAAT
CTGGGCAAGGGGGCTTTCTTCCAGCATGGTAGGGAGGGAGGGAGGGAGGG
AGGGAGGGGGGGTTCGAGGGATGTGAGAGTGATTCATTCGACCCTTGCTC
ATGGGACTTCTCTACTACTCTATTTGTTCACATGGTCCTCGACAGGATAA
CCAAGCCTTAGGTCTGAGTAGAAAATGAACGGACGTAGGGAGGGAGGGAC
GGAGGGAGGAAGTGTCGTCAAGTGGTTGAATGGCAGGTGGCCTTGCTTTT
TCACGGTGGCATAGTCATGCTCATTCTATTAAAGAAAAAGAGAGAGAAGG
AGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGGAGGAGGAGA

Coding sequence (CDS) from alignment at scaffold_11:119986..122380+

>mRNA_5614 ID=mRNA_5614|Name=jgi.p|Nanoce1779_2|589739|organism=Nannochloropsis oceanica|type=CDS|length=5304bp|location=Sequence derived from alignment at scaffold_11:119986..122380+ (Nannochloropsis oceanica)
ATGTTTGCCCGTCGTGCCATCAGCAGCTTGGGTTCCAAATTGGCGCAACG
CCAACCTGCTGCCATGGCTGCCGTCAAGCACGCCGTACGAGCCGCCCCTG
CCCATGCGAGTGCTGCTGGTTTCTCCTCCATTTCAGAGCCATCGTATCTA
GGTCGACCCTACAAAGATATCCCCACCAGCATCGGGGAGAAAGGCACGGC
GCAAACGGCATGGGAGAAGAGCTGTTACTTCAAGATCGACTTCAAGATCA
CGGAGGACGCCATGATGTACGAGGCTGTCCAACGCTTCGCCGCCTACAAC
ATCGGTGCCTTGGCCGTGACCGACAGCGCGGGGAAAGTGATCGGCGTCAT
CTCTGAGCGAGACTACGTCTGCAAGATCGCCTTATTGGGTCGGTCTTCCA
AGAGCACCACGGTGGGGGAAATCTGCACCCGCGGGAGCAACATTGTTGTG
GCTAAGACGACAGACACGATCGCCACGTGCATGAAGAAGATGCTAGCGAA
GGACATTCGACATTTGCCCGTGGTGGATGATGAGAAGAAGGAGGTGGTGG
GCATGCTCTCTATCAAGGACCTGATCAAGGAGCTTCAGAAGGAGAAAGAC
GACATTATCGAGAAACTCACAGACTTTAATCTGGGCAAGGGGGCTTTCTT
CCAGCATGGATAAATGTTTGCCCGTCGTGCCATCAGCAGCTTGGGTTCCA
AATTGGCGCAACGCCAACCTGCTGCCATGGCTGCCGTCAAGCACGCCGTA
CGAGCCGCCCCTGCCCATGCGAGTGCTGCTGGTTTCTCCTCCATTTCAGA
GCCATCGTATCTAGGTCGACCCTACAAAGATATCCCCACCAGCATCGGGG
AGAAAGGCACGGCGCAAACGGCATGGGAGAAGAGCTGTTACTTCAAGATC
GACTTCAAGATCACGGAGGACGCCATGATGTACGAGGCTGTCCAACGCTT
CGCCGCCTACAACATCGGTGCCTTGGCCGTGACCGACAGCGCGGGGAAAG
TGATCGGCGTCATCTCTGAGCGAGACTACGTCTGCAAGATCGCCTTATTG
GGTCGGTCTTCCAAGAGCACCACGGTGGGGGAAATCTGCACCCGCGGGAG
CAACATTGTTGTGGCTAAGACGACAGACACGATCGCCACGTGCATGAAGA
AGATGCTAGCGAAGGACATTCGACATTTGCCCGTGGTGGATGATGAGAAG
AAGGAGGTGGTGGGCATGCTCTCTATCAAGGACCTGATCAAGGAGCTTCA
GAAGGAGAAAGACGACATTATCGAGAAACTCACAGACTTTAATCTGGGCA
AGGGGGCTTTCTTCCAGCATGGATAAATGTTTGCCCGTCGTGCCATCAGC
AGCTTGGGTTCCAAATTGGCGCAACGCCAACCTGCTGCCATGGCTGCCGT
CAAGCACGCCGTACGAGCCGCCCCTGCCCATGCGAGTGCTGCTGGTTTCT
CCTCCATTTCAGAGCCATCGTATCTAGGTCGACCCTACAAAGATATCCCC
ACCAGCATCGGGGAGAAAGGCACGGCGCAAACGGCATGGGAGAAGAGCTG
TTACTTCAAGATCGACTTCAAGATCACGGAGGACGCCATGATGTACGAGG
CTGTCCAACGCTTCGCCGCCTACAACATCGGTGCCTTGGCCGTGACCGAC
AGCGCGGGGAAAGTGATCGGCGTCATCTCTGAGCGAGACTACGTCTGCAA
GATCGCCTTATTGGGTCGGTCTTCCAAGAGCACCACGGTGGGGGAAATCT
GCACCCGCGGGAGCAACATTGTTGTGGCTAAGACGACAGACACGATCGCC
ACGTGCATGAAGAAGATGCTAGCGAAGGACATTCGACATTTGCCCGTGGT
GGATGATGAGAAGAAGGAGGTGGTGGGCATGCTCTCTATCAAGGACCTGA
TCAAGGAGCTTCAGAAGGAGAAAGACGACATTATCGAGAAACTCACAGAC
TTTAATCTGGGCAAGGGGGCTTTCTTCCAGCATGGATAAATGTTTGCCCG
TCGTGCCATCAGCAGCTTGGGTTCCAAATTGGCGCAACGCCAACCTGCTG
CCATGGCTGCCGTCAAGCACGCCGTACGAGCCGCCCCTGCCCATGCGAGT
GCTGCTGGTTTCTCCTCCATTTCAGAGCCATCGTATCTAGGTCGACCCTA
CAAAGATATCCCCACCAGCATCGGGGAGAAAGGCACGGCGCAAACGGCAT
GGGAGAAGAGCTGTTACTTCAAGATCGACTTCAAGATCACGGAGGACGCC
ATGATGTACGAGGCTGTCCAACGCTTCGCCGCCTACAACATCGGTGCCTT
GGCCGTGACCGACAGCGCGGGGAAAGTGATCGGCGTCATCTCTGAGCGAG
ACTACGTCTGCAAGATCGCCTTATTGGGTCGGTCTTCCAAGAGCACCACG
GTGGGGGAAATCTGCACCCGCGGGAGCAACATTGTTGTGGCTAAGACGAC
AGACACGATCGCCACGTGCATGAAGAAGATGCTAGCGAAGGACATTCGAC
ATTTGCCCGTGGTGGATGATGAGAAGAAGGAGGTGGTGGGCATGCTCTCT
ATCAAGGACCTGATCAAGGAGCTTCAGAAGGAGAAAGACGACATTATCGA
GAAACTCACAGACTTTAATCTGGGCAAGGGGGCTTTCTTCCAGCATGGAT
AAATGTTTGCCCGTCGTGCCATCAGCAGCTTGGGTTCCAAATTGGCGCAA
CGCCAACCTGCTGCCATGGCTGCCGTCAAGCACGCCGTACGAGCCGCCCC
TGCCCATGCGAGTGCTGCTGGTTTCTCCTCCATTTCAGAGCCATCGTATC
TAGGTCGACCCTACAAAGATATCCCCACCAGCATCGGGGAGAAAGGCACG
GCGCAAACGGCATGGGAGAAGAGCTGTTACTTCAAGATCGACTTCAAGAT
CACGGAGGACGCCATGATGTACGAGGCTGTCCAACGCTTCGCCGCCTACA
ACATCGGTGCCTTGGCCGTGACCGACAGCGCGGGGAAAGTGATCGGCGTC
ATCTCTGAGCGAGACTACGTCTGCAAGATCGCCTTATTGGGTCGGTCTTC
CAAGAGCACCACGGTGGGGGAAATCTGCACCCGCGGGAGCAACATTGTTG
TGGCTAAGACGACAGACACGATCGCCACGTGCATGAAGAAGATGCTAGCG
AAGGACATTCGACATTTGCCCGTGGTGGATGATGAGAAGAAGGAGGTGGT
GGGCATGCTCTCTATCAAGGACCTGATCAAGGAGCTTCAGAAGGAGAAAG
ACGACATTATCGAGAAACTCACAGACTTTAATCTGGGCAAGGGGGCTTTC
TTCCAGCATGGATAAATGTTTGCCCGTCGTGCCATCAGCAGCTTGGGTTC
CAAATTGGCGCAACGCCAACCTGCTGCCATGGCTGCCGTCAAGCACGCCG
TACGAGCCGCCCCTGCCCATGCGAGTGCTGCTGGTTTCTCCTCCATTTCA
GAGCCATCGTATCTAGGTCGACCCTACAAAGATATCCCCACCAGCATCGG
GGAGAAAGGCACGGCGCAAACGGCATGGGAGAAGAGCTGTTACTTCAAGA
TCGACTTCAAGATCACGGAGGACGCCATGATGTACGAGGCTGTCCAACGC
TTCGCCGCCTACAACATCGGTGCCTTGGCCGTGACCGACAGCGCGGGGAA
AGTGATCGGCGTCATCTCTGAGCGAGACTACGTCTGCAAGATCGCCTTAT
TGGGTCGGTCTTCCAAGAGCACCACGGTGGGGGAAATCTGCACCCGCGGG
AGCAACATTGTTGTGGCTAAGACGACAGACACGATCGCCACGTGCATGAA
GAAGATGCTAGCGAAGGACATTCGACATTTGCCCGTGGTGGATGATGAGA
AGAAGGAGGTGGTGGGCATGCTCTCTATCAAGGACCTGATCAAGGAGCTT
CAGAAGGAGAAAGACGACATTATCGAGAAACTCACAGACTTTAATCTGGG
CAAGGGGGCTTTCTTCCAGCATGGATAAATGTTTGCCCGTCGTGCCATCA
GCAGCTTGGGTTCCAAATTGGCGCAACGCCAACCTGCTGCCATGGCTGCC
GTCAAGCACGCCGTACGAGCCGCCCCTGCCCATGCGAGTGCTGCTGGTTT
CTCCTCCATTTCAGAGCCATCGTATCTAGGTCGACCCTACAAAGATATCC
CCACCAGCATCGGGGAGAAAGGCACGGCGCAAACGGCATGGGAGAAGAGC
TGTTACTTCAAGATCGACTTCAAGATCACGGAGGACGCCATGATGTACGA
GGCTGTCCAACGCTTCGCCGCCTACAACATCGGTGCCTTGGCCGTGACCG
ACAGCGCGGGGAAAGTGATCGGCGTCATCTCTGAGCGAGACTACGTCTGC
AAGATCGCCTTATTGGGTCGGTCTTCCAAGAGCACCACGGTGGGGGAAAT
CTGCACCCGCGGGAGCAACATTGTTGTGGCTAAGACGACAGACACGATCG
CCACGTGCATGAAGAAGATGCTAGCGAAGGACATTCGACATTTGCCCGTG
GTGGATGATGAGAAGAAGGAGGTGGTGGGCATGCTCTCTATCAAGGACCT
GATCAAGGAGCTTCAGAAGGAGAAAGACGACATTATCGAGAAACTCACAG
ACTTTAATCTGGGCAAGGGGGCTTTCTTCCAGCATGGATAAATGTTTGCC
CGTCGTGCCATCAGCAGCTTGGGTTCCAAATTGGCGCAACGCCAACCTGC
TGCCATGGCTGCCGTCAAGCACGCCGTACGAGCCGCCCCTGCCCATGCGA
GTGCTGCTGGTTTCTCCTCCATTTCAGAGCCATCGTATCTAGGTCGACCC
TACAAAGATATCCCCACCAGCATCGGGGAGAAAGGCACGGCGCAAACGGC
ATGGGAGAAGAGCTGTTACTTCAAGATCGACTTCAAGATCACGGAGGACG
CCATGATGTACGAGGCTGTCCAACGCTTCGCCGCCTACAACATCGGTGCC
TTGGCCGTGACCGACAGCGCGGGGAAAGTGATCGGCGTCATCTCTGAGCG
AGACTACGTCTGCAAGATCGCCTTATTGGGTCGGTCTTCCAAGAGCACCA
CGGTGGGGGAAATCTGCACCCGCGGGAGCAACATTGTTGTGGCTAAGACG
ACAGACACGATCGCCACGTGCATGAAGAAGATGCTAGCGAAGGACATTCG
ACATTTGCCCGTGGTGGATGATGAGAAGAAGGAGGTGGTGGGCATGCTCT
CTATCAAGGACCTGATCAAGGAGCTTCAGAAGGAGAAAGACGACATTATC
GAGAAACTCACAGACTTTAATCTGGGCAAGGGGGCTTTCTTCCAGCATGG
ATAA

Synonyms

Publications