jgi.p|Nanoce1779_2|589736, mRNA_5613 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589736
Unique NamemRNA_5613
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length844
Alignment locationscaffold_11:117596..118439 +

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Properties
Property NameValue
TranscriptId589822
TrackFilteredModels2
ProteinId589736
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:117596..118439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589736gene_5613Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589736mRNA_5613-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5613CDS_5613Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5613 ID=mRNA_5613|Name=jgi.p|Nanoce1779_2|589736|organism=Nannochloropsis oceanica|type=mRNA|length=844bp
TGGCCACCCTCGCCCTTCACACCGGTAAGGGTGAGCCCGTCGCAAGCAGC
ATCGCGCTTAAAGACTACCTGACCTGCCACCCTTCTTGTGGGGGTCCGCT
CTGGCACGTCATCATCGCCAGAGACAACGTCGAAATGGGGCTGGCGATCG
AGGCCCGCCCTTCCATGTCCTTCCTCGATGCCCGTGTGCAAGGGGGAGCA
AAAGTCCTGCGCGTCGTGACGTGGAAGCACGACCTCTCTCTCTCGATGTG
GGAAGAAGCTGGTTTGGCCCTCCCCTTCCCTTCGTTTAGCCAGGAAAAAA
CTGCTCAGTGGGTGTTTGTCGTACTGATGCTCCTGGCCTTGGTCCTGGCG
CTGCTGACTCAGGCAAAGGCATGGACCGGTCTAGACGTACTTAAATGCCC
GACGTGTGAGAGGGAGGGGTGTATGATGAACGCGGAGGAGGAAGAGGAAG
CGAGGGCGTGTGGGCTGCTGAAGGGTCGTATTAGAAATGCGGCTTTGGCG
TGTTTGACGGCGGCGTTGGTGAGCAAGGCTTGGGCGCGACGGACGAGAGG
GATCGAGAGGCTGGAGAGGACAAGTGGGGGAGGAAGAGGGCGGGGTGGAG
GGAGGGGTGCCTCCTCCTCTTCGTCCACCTTGTCGTCTGGTGGAGGAGGA
AGAGGTAGTGGTGGTAGGAGAAGACCAGTTGCCAAATCGAGGAACAAATG
AAGAGGCGTGTGGAAGGTCAGAAGGGGTTTAGGTGTCCAAAGGCGCGGGT
AAGAAAGCCAGAAGGAGCTGGTAGCTGTAACGGTAGCGGTAACGTCACAA
CGGAAACAGAGAACAGAAAAAGAAAACAAAGTGGAAAACTGACA
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protein sequence of jgi.p|Nanoce1779_2|589736

>mRNA_5613-protein ID=mRNA_5613-protein|Name=jgi.p|Nanoce1779_2|589736|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MGLAIEARPSMSFLDARVQGGAKVLRVVTWKHDLSLSMWEEAGLALPFPS
FSQEKTAQWVFVVLMLLALVLALLTQAKAWTGLDVLKCPTCEREGCMMNA
EEEEEARACGLLKGRIRNAALACLTAALVSKAWARRTRGIERLERTSGGG
RGRGGGRGASSSSSTLSSGGGGRGSGGRRRPVAKSRNK*
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mRNA from alignment at scaffold_11:117596..118439+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5613 ID=mRNA_5613|Name=jgi.p|Nanoce1779_2|589736|organism=Nannochloropsis oceanica|type=mRNA|length=844bp|location=Sequence derived from alignment at scaffold_11:117596..118439+ (Nannochloropsis oceanica)
TGGCCACCCTCGCCCTTCACACCGGTAAGGGTGAGCCCGTCGCAAGCAGC
ATCGCGCTTAAAGACTACCTGACCTGCCACCCTTCTTGTGGGGGTCCGCT
CTGGCACGTCATCATCGCCAGAGACAACGTCGAAATGGGGCTGGCGATCG
AGGCCCGCCCTTCCATGTCCTTCCTCGATGCCCGTGTGCAAGGGGGAGCA
AAAGTCCTGCGCGTCGTGACGTGGAAGCACGACCTCTCTCTCTCGATGTG
GGAAGAAGCTGGTTTGGCCCTCCCCTTCCCTTCGTTTAGCCAGGAAAAAA
CTGCTCAGTGGGTGTTTGTCGTACTGATGCTCCTGGCCTTGGTCCTGGCG
CTGCTGACTCAGGCAAAGGCATGGACCGGTCTAGACGTACTTAAATGCCC
GACGTGTGAGAGGGAGGGGTGTATGATGAACGCGGAGGAGGAAGAGGAAG
CGAGGGCGTGTGGGCTGCTGAAGGGTCGTATTAGAAATGCGGCTTTGGCG
TGTTTGACGGCGGCGTTGGTGAGCAAGGCTTGGGCGCGACGGACGAGAGG
GATCGAGAGGCTGGAGAGGACAAGTGGGGGAGGAAGAGGGCGGGGTGGAG
GGAGGGGTGCCTCCTCCTCTTCGTCCACCTTGTCGTCTGGTGGAGGAGGA
AGAGGTAGTGGTGGTAGGAGAAGACCAGTTGCCAAATCGAGGAACAAATG
AAGAGGCGTGTGGAAGGTCAGAAGGGGTTTAGGTGTCCAAAGGCGCGGGT
AAGAAAGCCAGAAGGAGCTGGTAGCTGTAACGGTAGCGGTAACGTCACAA
CGGAAACAGAGAACAGAAAAAGAAAACAAAGTGGAAAACTGACA
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Coding sequence (CDS) from alignment at scaffold_11:117596..118439+

>mRNA_5613 ID=mRNA_5613|Name=jgi.p|Nanoce1779_2|589736|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_11:117596..118439+ (Nannochloropsis oceanica)
ATGGGGCTGGCGATCGAGGCCCGCCCTTCCATGTCCTTCCTCGATGCCCG
TGTGCAAGGGGGAGCAAAAGTCCTGCGCGTCGTGACGTGGAAGCACGACC
TCTCTCTCTCGATGTGGGAAGAAGCTGGTTTGGCCCTCCCCTTCCCTTCG
TTTAGCCAGGAAAAAACTGCTCAGTGGGTGTTTGTCGTACTGATGCTCCT
GGCCTTGGTCCTGGCGCTGCTGACTCAGGCAAAGGCATGGACCGGTCTAG
ACGTACTTAAATGCCCGACGTGTGAGAGGGAGGGGTGTATGATGAACGCG
GAGGAGGAAGAGGAAGCGAGGGCGTGTGGGCTGCTGAAGGGTCGTATTAG
AAATGCGGCTTTGGCGTGTTTGACGGCGGCGTTGGTGAGCAAGGCTTGGG
CGCGACGGACGAGAGGGATCGAGAGGCTGGAGAGGACAAGTGGGGGAGGA
AGAGGGCGGGGTGGAGGGAGGGGTGCCTCCTCCTCTTCGTCCACCTTGTC
GTCTGGTGGAGGAGGAAGAGGTAGTGGTGGTAGGAGAAGACCAGTTGCCA
AATCGAGGAACAAATGA
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Synonyms
Publications