jgi.p|Nanoce1779_2|589735, mRNA_5612 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589735
Unique Name	mRNA_5612
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1367
Alignment location	scaffold_11:115416..116782 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589821
Track	FilteredModels2
ProteinId	589735

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:115416..116782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589735	gene_5612	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589735	mRNA_5612-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5612	CDS_5612	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:115416..116782+
coding sequence from alignment at scaffold_11:115416..116782+

mRNA sequence

>mRNA_5612 ID=mRNA_5612|Name=jgi.p|Nanoce1779_2|589735|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp
CAGCATGTCCGTCAAATGTCAGAGCGAGGTCCATACCGACAAAGAGTGGA
CGGTGCTCGGGCAGCAGCTGGGCCATGGATCGGGGCGCTTCGGTGATATC
CATGGTTGGAGTGAGACGAAGGAAAGAATCAAAGCGGAGGACATCAAGGT
CAGAATAACAAAGATGGAGCGTAAGAGACAGGTGGAGGAAGAACGGCGAG
TAGAACTCTGCCATCAGGCGAGAAAGCGGGGAGAAGGATGGGCGCAGCGC
CAGCAGCAAGCGGAGGAAAATGAAACGGCACGGTTGCGCTGGGAGAAGGA
GGAGACCCTGCCAGCGGAGATTAAAAGACGTGCATGGCTTGTCAGCGAAA
AGAATGATGTCAGAAAGGGGGTAGAAGTACGATCACGTCGCCATCAGCAA
GATAAAATAGAAAACCGACGCCGGGAGGAGGAGGAGGAGGAGGAGATGAA
GATGGAGAGGCAGGCGCAGCTCTCGGAGCTGCAGAAGGAGGAGAGGACTA
CACGACTCCTCCACCAGCGGGATGACGAGCAGCGGGTGCTATATCGTCGA
GAGGATCAAGACGAGAGCAAGGTAGGCGGGAATCCATGCTTGGGGCTCGC
CTTTCGTGTGGTGTTGGCCCTCTCCATCTGGTGGTATTTCCCCACATTCT
CGCGACTGGCCTTAAGCTCGATCGCAGACGCCAAGTTGCAAACGCTCTCA
GTGCTCCAGGAGAAGATGACACCATTGATCACTCACTGGTCGACGACGGA
GGGTGACTTTGTCCCCTGGACCTTGCTGCAGTGGGTGTGGTGGTGTTACT
GGTGGTCCTTTGTGTGGTGCTTTGTGGGAGTGTTTTTGGGATCGCCGTTT
TTGGGCTTTGTGATGAAGAAATATGTTTTTGGTCCTCGAGCAGAGAGGAG
AGCTAGAGAAAAAGCTGCGAAAGAGGCGGCACACCTTCAAGAGGGGTGGA
GTCCCACCATTTGAAAGAAGGATGAAGACCAGGATGGCAGGTGTGGCGAC
ATGGCCTGGTAGAGAAATGGTGGTGCTAGAGCCTGTGATAGGGGTCAATG
GGCGCGAAGGTGTGAGGCTAGGCTGAAAGAAGGATTAAGAGACGGGCTAG
AAGCCGTGCTCGACAGGGTCCATGGGGATGATGTAAACAAGTGGGAGGAA
CCTTTAAATCCATGAAAAATAGTGTAGAATCGATGTCGCGGACTCTGACA
TGCAGTGCACTGCAACTTTTGCCTCATTAATTACACCTTAATTTTAATTG
TCTTGGTTTGCAAACGCCGTGTAAACCACCACTCAATTAACTTACAATGT
GACCAAAATGAATACGTAGTTGAGAGGTTGGCCTTGGGGGATTAAACACG
TCTGGCCGAAAATGCAC

protein sequence of jgi.p|Nanoce1779_2|589735

>mRNA_5612-protein ID=mRNA_5612-protein|Name=jgi.p|Nanoce1779_2|589735|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MSVKCQSEVHTDKEWTVLGQQLGHGSGRFGDIHGWSETKERIKAEDIKVR
ITKMERKRQVEEERRVELCHQARKRGEGWAQRQQQAEENETARLRWEKEE
TLPAEIKRRAWLVSEKNDVRKGVEVRSRRHQQDKIENRRREEEEEEEMKM
ERQAQLSELQKEERTTRLLHQRDDEQRVLYRREDQDESKVGGNPCLGLAF
RVVLALSIWWYFPTFSRLALSSIADAKLQTLSVLQEKMTPLITHWSTTEG
DFVPWTLLQWVWWCYWWSFVWCFVGVFLGSPFLGFVMKKYVFGPRAERRA
REKAAKEAAHLQEGWSPTI*

mRNA from alignment at scaffold_11:115416..116782+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5612 ID=mRNA_5612|Name=jgi.p|Nanoce1779_2|589735|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp|location=Sequence derived from alignment at scaffold_11:115416..116782+ (Nannochloropsis oceanica)
CAGCATGTCCGTCAAATGTCAGAGCGAGGTCCATACCGACAAAGAGTGGA
CGGTGCTCGGGCAGCAGCTGGGCCATGGATCGGGGCGCTTCGGTGATATC
CATGGTTGGAGTGAGACGAAGGAAAGAATCAAAGCGGAGGACATCAAGGT
CAGAATAACAAAGATGGAGCGTAAGAGACAGGTGGAGGAAGAACGGCGAG
TAGAACTCTGCCATCAGGCGAGAAAGCGGGGAGAAGGATGGGCGCAGCGC
CAGCAGCAAGCGGAGGAAAATGAAACGGCACGGTTGCGCTGGGAGAAGGA
GGAGACCCTGCCAGCGGAGATTAAAAGACGTGCATGGCTTGTCAGCGAAA
AGAATGATGTCAGAAAGGGGGTAGAAGTACGATCACGTCGCCATCAGCAA
GATAAAATAGAAAACCGACGCCGGGAGGAGGAGGAGGAGGAGGAGATGAA
GATGGAGAGGCAGGCGCAGCTCTCGGAGCTGCAGAAGGAGGAGAGGACTA
CACGACTCCTCCACCAGCGGGATGACGAGCAGCGGGTGCTATATCGTCGA
GAGGATCAAGACGAGAGCAAGGTAGGCGGGAATCCATGCTTGGGGCTCGC
CTTTCGTGTGGTGTTGGCCCTCTCCATCTGGTGGTATTTCCCCACATTCT
CGCGACTGGCCTTAAGCTCGATCGCAGACGCCAAGTTGCAAACGCTCTCA
GTGCTCCAGGAGAAGATGACACCATTGATCACTCACTGGTCGACGACGGA
GGGTGACTTTGTCCCCTGGACCTTGCTGCAGTGGGTGTGGTGGTGTTACT
GGTGGTCCTTTGTGTGGTGCTTTGTGGGAGTGTTTTTGGGATCGCCGTTT
TTGGGCTTTGTGATGAAGAAATATGTTTTTGGTCCTCGAGCAGAGAGGAG
AGCTAGAGAAAAAGCTGCGAAAGAGGCGGCACACCTTCAAGAGGGGTGGA
GTCCCACCATTTGAAAGAAGGATGAAGACCAGGATGGCAGGTGTGGCGAC
ATGGCCTGGTAGAGAAATGGTGGTGCTAGAGCCTGTGATAGGGGTCAATG
GGCGCGAAGGTGTGAGGCTAGGCTGAAAGAAGGATTAAGAGACGGGCTAG
AAGCCGTGCTCGACAGGGTCCATGGGGATGATGTAAACAAGTGGGAGGAA
CCTTTAAATCCATGAAAAATAGTGTAGAATCGATGTCGCGGACTCTGACA
TGCAGTGCACTGCAACTTTTGCCTCATTAATTACACCTTAATTTTAATTG
TCTTGGTTTGCAAACGCCGTGTAAACCACCACTCAATTAACTTACAATGT
GACCAAAATGAATACGTAGTTGAGAGGTTGGCCTTGGGGGATTAAACACG
TCTGGCCGAAAATGCAC

Coding sequence (CDS) from alignment at scaffold_11:115416..116782+

>mRNA_5612 ID=mRNA_5612|Name=jgi.p|Nanoce1779_2|589735|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_11:115416..116782+ (Nannochloropsis oceanica)
ATGTCCGTCAAATGTCAGAGCGAGGTCCATACCGACAAAGAGTGGACGGT
GCTCGGGCAGCAGCTGGGCCATGGATCGGGGCGCTTCGGTGATATCCATG
GTTGGAGTGAGACGAAGGAAAGAATCAAAGCGGAGGACATCAAGGTCAGA
ATAACAAAGATGGAGCGTAAGAGACAGGTGGAGGAAGAACGGCGAGTAGA
ACTCTGCCATCAGGCGAGAAAGCGGGGAGAAGGATGGGCGCAGCGCCAGC
AGCAAGCGGAGGAAAATGAAACGGCACGGTTGCGCTGGGAGAAGGAGGAG
ACCCTGCCAGCGGAGATTAAAAGACGTGCATGGCTTGTCAGCGAAAAGAA
TGATGTCAGAAAGGGGGTAGAAGTACGATCACGTCGCCATCAGCAAGATA
AAATAGAAAACCGACGCCGGGAGGAGGAGGAGGAGGAGGAGATGAAGATG
GAGAGGCAGGCGCAGCTCTCGGAGCTGCAGAAGGAGGAGAGGACTACACG
ACTCCTCCACCAGCGGGATGACGAGCAGCGGGTGCTATATCGTCGAGAGG
ATCAAGACGAGAGCAAGGTAGGCGGGAATCCATGCTTGGGGCTCGCCTTT
CGTGTGGTGTTGGCCCTCTCCATCTGGTGGTATTTCCCCACATTCTCGCG
ACTGGCCTTAAGCTCGATCGCAGACGCCAAGTTGCAAACGCTCTCAGTGC
TCCAGGAGAAGATGACACCATTGATCACTCACTGGTCGACGACGGAGGGT
GACTTTGTCCCCTGGACCTTGCTGCAGTGGGTGTGGTGGTGTTACTGGTG
GTCCTTTGTGTGGTGCTTTGTGGGAGTGTTTTTGGGATCGCCGTTTTTGG
GCTTTGTGATGAAGAAATATGTTTTTGGTCCTCGAGCAGAGAGGAGAGCT
AGAGAAAAAGCTGCGAAAGAGGCGGCACACCTTCAAGAGGGGTGGAGTCC
CACCATTTGA

Synonyms

Publications