jgi.p|Nanoce1779_2|32100, mRNA_5607 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|32100
Unique NamemRNA_5607
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1070
Alignment locationscaffold_11:102138..103207 -

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Properties
Property NameValue
TranscriptId32186
TrackFilteredModels2
ProteinId32100
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:102138..103207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32100gene_5607Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|32100mRNA_5607-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5607CDS_5607Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5607 ID=mRNA_5607|Name=jgi.p|Nanoce1779_2|32100|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp
GTACGTGCCTAGATTGCGCTCTTGGTGTCTTTGCACGTGGCAGCAAGCAG
ATCGGCGGGACATCGTTTCCATATACGTTATGTAACGGGACGACTCGTTC
GGAACCTGTCGCCCTCCCCTCCCCTTTCTCACCTCCCGCATAGTGGATAT
CCAAGTCACCATGAAGTCCTTCCAAACTCGCACACCGACATTATCCCCCC
ATCGCAACACACAGGTGGGCACAGCCACGTCATTCACTCAGATGGTCCCA
CCACTGCCACGGCCGCTGCCAAAGTCCTCTGCACCAACCTCCCCCCTTTC
TCCCGCCCTCCCTCCACCACCGTCGTCGTCCCCACCGACACTCATTCTTC
GAATCAAGCGCCGCCGGGAGGAGACCCCTGTGCCCTTACTTCTCCTAGAG
GCCACCGCCGCGGGGCCCCACAAGCGGGTCCGTCCCACCTTGTCGGCACG
TCTAGCTGCTTTGACAACTCAAGAGCGGGAGGATGAGGGAAGGAGGGAGG
AAGGAGAAAAGGGAAATATGACAGGGGAGGAACGGAGGAAACGCTTTGTG
TTCAGTCGAGTTGAGACGGTAGAGACAACTGGAATGGATGAAAACGAGGA
CGATGGAGGGCAGCAACAGCAGCAGCAACACGGGGGGAGGCGGCTCCAAG
GGTGGGAGAAGCCACGTCTTGCACAACGACGAGGATACGGAGCAGCGCAG
GAGAGAGGAATATTTCGGGAGATCCGACGGGTCTATTCTAGGATAGATGA
TGAGGAGGAAGGAGAGAATAGAAGAGGAGGAGGAATTGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGAAGGGAAAAGAAGA
AGAGGAGGAGGAAGAGAAGTAGGAGGAAGAGAGGAGGACGAAGGCGTTTC
TTCCACTTCATTGACCTAGCTCGATGCTCTCAGACACCTCCCTCCTCCCC
CTCCTTCCTCCCCCTCCCTCTTCCTCATCCTCCTCGAAGACCTCATGTTA
TCTTCTCCCCCGTCGACCGCCAACTCGACGCTGCCATCGCCACTGCATTC
ATGTCCCTCCCTCCCCCCCT
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protein sequence of jgi.p|Nanoce1779_2|32100

>mRNA_5607-protein ID=mRNA_5607-protein|Name=jgi.p|Nanoce1779_2|32100|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MKSFQTRTPTLSPHRNTQVGTATSFTQMVPPLPRPLPKSSAPTSPLSPAL
PPPPSSSPPTLILRIKRRREETPVPLLLLEATAAGPHKRVRPTLSARLAA
LTTQEREDEGRREEGEKGNMTGEERRKRFVFSRVETVETTGMDENEDDGG
QQQQQQHGGRRLQGWEKPRLAQRRGYGAAQERGIFREIRRVYSRIDDEEE
GENRRGGGIGGGGGGGGGGGEGGGGEGKRRRGGGREVGGREEDEGVSSTS
LT*
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mRNA from alignment at scaffold_11:102138..103207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5607 ID=mRNA_5607|Name=jgi.p|Nanoce1779_2|32100|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp|location=Sequence derived from alignment at scaffold_11:102138..103207- (Nannochloropsis oceanica)
GTACGTGCCTAGATTGCGCTCTTGGTGTCTTTGCACGTGGCAGCAAGCAG
ATCGGCGGGACATCGTTTCCATATACGTTATGTAACGGGACGACTCGTTC
GGAACCTGTCGCCCTCCCCTCCCCTTTCTCACCTCCCGCATAGTGGATAT
CCAAGTCACCATGAAGTCCTTCCAAACTCGCACACCGACATTATCCCCCC
ATCGCAACACACAGGTGGGCACAGCCACGTCATTCACTCAGATGGTCCCA
CCACTGCCACGGCCGCTGCCAAAGTCCTCTGCACCAACCTCCCCCCTTTC
TCCCGCCCTCCCTCCACCACCGTCGTCGTCCCCACCGACACTCATTCTTC
GAATCAAGCGCCGCCGGGAGGAGACCCCTGTGCCCTTACTTCTCCTAGAG
GCCACCGCCGCGGGGCCCCACAAGCGGGTCCGTCCCACCTTGTCGGCACG
TCTAGCTGCTTTGACAACTCAAGAGCGGGAGGATGAGGGAAGGAGGGAGG
AAGGAGAAAAGGGAAATATGACAGGGGAGGAACGGAGGAAACGCTTTGTG
TTCAGTCGAGTTGAGACGGTAGAGACAACTGGAATGGATGAAAACGAGGA
CGATGGAGGGCAGCAACAGCAGCAGCAACACGGGGGGAGGCGGCTCCAAG
GGTGGGAGAAGCCACGTCTTGCACAACGACGAGGATACGGAGCAGCGCAG
GAGAGAGGAATATTTCGGGAGATCCGACGGGTCTATTCTAGGATAGATGA
TGAGGAGGAAGGAGAGAATAGAAGAGGAGGAGGAATTGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGAAGGGAAAAGAAGA
AGAGGAGGAGGAAGAGAAGTAGGAGGAAGAGAGGAGGACGAAGGCGTTTC
TTCCACTTCATTGACCTAGCTCGATGCTCTCAGACACCTCCCTCCTCCCC
CTCCTTCCTCCCCCTCCCTCTTCCTCATCCTCCTCGAAGACCTCATGTTA
TCTTCTCCCCCGTCGACCGCCAACTCGACGCTGCCATCGCCACTGCATTC
ATGTCCCTCCCTCCCCCCCT
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Coding sequence (CDS) from alignment at scaffold_11:102138..103207-

>mRNA_5607 ID=mRNA_5607|Name=jgi.p|Nanoce1779_2|32100|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_11:102138..103207- (Nannochloropsis oceanica)
ATGAAGTCCTTCCAAACTCGCACACCGACATTATCCCCCCATCGCAACAC
ACAGGTGGGCACAGCCACGTCATTCACTCAGATGGTCCCACCACTGCCAC
GGCCGCTGCCAAAGTCCTCTGCACCAACCTCCCCCCTTTCTCCCGCCCTC
CCTCCACCACCGTCGTCGTCCCCACCGACACTCATTCTTCGAATCAAGCG
CCGCCGGGAGGAGACCCCTGTGCCCTTACTTCTCCTAGAGGCCACCGCCG
CGGGGCCCCACAAGCGGGTCCGTCCCACCTTGTCGGCACGTCTAGCTGCT
TTGACAACTCAAGAGCGGGAGGATGAGGGAAGGAGGGAGGAAGGAGAAAA
GGGAAATATGACAGGGGAGGAACGGAGGAAACGCTTTGTGTTCAGTCGAG
TTGAGACGGTAGAGACAACTGGAATGGATGAAAACGAGGACGATGGAGGG
CAGCAACAGCAGCAGCAACACGGGGGGAGGCGGCTCCAAGGGTGGGAGAA
GCCACGTCTTGCACAACGACGAGGATACGGAGCAGCGCAGGAGAGAGGAA
TATTTCGGGAGATCCGACGGGTCTATTCTAGGATAGATGATGAGGAGGAA
GGAGAGAATAGAAGAGGAGGAGGAATTGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAAGGAGGAGGAGGGGAAGGGAAAAGAAGAAGAGGAGGAG
GAAGAGAAGTAGGAGGAAGAGAGGAGGACGAAGGCGTTTCTTCCACTTCA
TTGACCTAG
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Synonyms
Publications