jgi.p|Nanoce1779_2|670907, mRNA_5600 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670907
Unique Name	mRNA_5600
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1173
Alignment location	scaffold_11:76880..78389 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670993
Track	FilteredModels2
ProteinId	670907

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:76880..78389 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670907	gene_5600	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670907	mRNA_5600-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5600	CDS_5600	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:76880..78389+
coding sequence from alignment at scaffold_11:76880..78389+

mRNA sequence

>mRNA_5600 ID=mRNA_5600|Name=jgi.p|Nanoce1779_2|670907|organism=Nannochloropsis oceanica|type=mRNA|length=1173bp
ACAGACACAGGCATCACAATGCCCTTGAAAGAGGAAACACCCGCAGTGCA
CACACACGGGCTGGGGCAGCAGGGCAGCGCACCGACCAGGGTTACGGCAA
CCGTAGCAGACTTTGTGGCAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGT
GACAACAACAACAACGGAGGGTTTCCCAGCGGACGACGGCGCCCGAAAAA
AATCCCCGGCCGTTACTTAGAAGGAGATGGGAGTGCCGGAAGCGAGGAGG
AGCAGAAAGATAGAGGAGAAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAG
GGGGGTGGGAAGAAGGGAGACAAGAAGCGGAGGCGGGCGGCAGATGTGGC
GGCATCTTTAGAAGACGGCGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCA
ACAGTAGCAACAATAGTGTCGACAGCAACAGCAGTGGAGGGAGTAGCATC
AAGAGCAAGTTTAAAGAGCGACACGATTACACGGGGAACCCGGCGCCGCA
GCCGCAACCTCCGCCGCCCCCGCCGCCCCCCTTTCGTCCGCCCGGCATGA
TGGGGATGACAGGAGGAGGAGGAGGAGGAGAAGTAGGAAAACCTGGAGGA
GGAGGAAGGGGAGGAGGAGGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGC
ACCTCAGGGCCCTACTTCTACGTTCCGCGGAGTCCGATGGAGCAAGCAAC
AGGGGCGATGGCGCGTTGACGTGCACTACAAGGGCAAGGACTTGTTTTTG
GCGTATTTCAACGATGAGATTGAGGCGGCCAGGGTGTTTGATGACGCGGC
CTCAACGCTGTATGAGGACGGGGTACTCCTGAATTTTCTGCCTGACGGAA
CGCCAAACCCGGAACGCCGACGAGGGCGACGAGGCATCAAAGTCAAAGCC
CGCGACCCTCCTCCCCCGTGGGTCGTGGAAAAGCTGCAGACTCTTGGCCA
TAACACCACGCTCCTCCCTCCCGGCAGGAAGCTTTATCCACTTCCCCTTC
CTCCTTCTTCCTCCTCCTTCCCCTCCCTGTCCTCCCACCATCATCATCCT
CCTCCTCCTCATCCTCATCATCAGCCTCCTCAACAACCCCCCTACTCCTC
CTTGTATCCTCCTCCCCCCTCCTCCTCCTTCCCTTCCACCGCCGCGGGCG
CTGCTGCCGCTGGTGCTGCTGCT

protein sequence of jgi.p|Nanoce1779_2|670907

>mRNA_5600-protein ID=mRNA_5600-protein|Name=jgi.p|Nanoce1779_2|670907|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MPLKEETPAVHTHGLGQQGSAPTRVTATVADFVAAGPSGAGGGGDNNNNG
GFPSGRRRPKKIPGRYLEGDGSAGSEEEQKDRGEGAGRQGPGGKGGGKKG
DKKRRRAADVAASLEDGAGGAGRGGGSNSSNNSVDSNSSGGSSIKSKFKE
RHDYTGNPAPQPQPPPPPPPPFRPPGMMGMTGGGGGGEVGKPGGGGRGGG
GEGGRAGGAVAPQGPTSTFRGVRWSKQQGRWRVDVHYKGKDLFLAYFNDE
IEAARVFDDAASTLYEDGVLLNFLPDGTPNPERRRGRRGIKVKARDPPPP
WVVEKLQTLGHNTTLLPPGRKLYPLPLPPSSSSFPSLSSHHHHPPPPHPH
HQPPQQPPYSSLYPPPPSSSFPSTAAGAAAAGAAA

mRNA from alignment at scaffold_11:76880..78389+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5600 ID=mRNA_5600|Name=jgi.p|Nanoce1779_2|670907|organism=Nannochloropsis oceanica|type=mRNA|length=1510bp|location=Sequence derived from alignment at scaffold_11:76880..78389+ (Nannochloropsis oceanica)
ACAGACACAGGCATCACAATGCCCTTGAAAGAGGAAACACCCGCAGTGCA
CACACACGGGCTGGGGCAGCAGGGCAGCGCACCGACCAGGGTTACGGCAA
CCGTAGCAGACTTTGTGGCAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGT
GACAACAACAACAACGGAGGGTTTCCCAGCGGACGACGGCGCCCGAAAAA
AATCCCCGGCCGTTACTTAGAAGGAGATGGGAGTGCCGGAAGCGAGGAGG
AGCAGAAAGATAGAGGAGAAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAG
GGGGGTGGGAAGAAGGGAGACAAGAAGCGGAGGCGGGCGGCAGATGTGGC
GGCATCTTTAGAAGACGGCGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCA
ACAGTAGCAACAATAGTGTCGACAGCAACAGCAGTGGAGGGAGTAGCATC
AAGAGCAAGTTTAAAGAGCGACACGATTACACGGGGAACCCGGCGCCGCA
GCCGCAACCTCCGCCGCCCCCGCCGCCCCCCTTTCGTCCGCCCGGCATGA
TGGGGATGACAGGAGGAGGAGGAGGAGGAGAAGTAGGAAAACCTGGAGGA
GGAGGAAGGGGAGGAGGAGGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGC
ACCTCAGGGCCCTACTTCTACGTTCCGCGGAGTCCGATGGAGCAAGCAAC
AGGGGCGATGGCGCGTTGACGTGCACTACAAGGGCAAGGACTTGTTTTTG
GCGTATTTCAACGATGAGATTGAGGCGGCCAGGGTGTTTGATGACGCGGC
CTCAACGCTGTATGAGGACGGTGAGGAAGAAGGGAGGAAGGGAGGGAGGG
CGGGAAGACGGCTGGGATGGCCAGAAGGGTCTTTGTTGACAATTTTTGCA
TTCTCCAGTCGCCAAATTCAAAGTTTGATTCATACACTTGTACTCTATTG
TGACACGTACCTTTCTCTCTCTCCCCTCCTTCCCCCTTTCCCTCGTCAAC
AGGGGTACTCCTGAATTTTCTGCCTGACGGAACGCCAAACCCGGAACGCC
GACGAGGGCGACGAGGCATCAAAGTCAAGTATGTAGTGAAGGAGGGCGGG
AAGGAGGGTGGGAGGGTACGATGGGAGTCCGGAGTTTCAAAGGCGCCAGA
ACCGTGGAATAAGTGACTCTCATGTGCTCACCCCTCCCTCCCTTCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCTTCTTAACAGAGCCCGCGACCCTCCTC
CCCCGTGGGTCGTGGAAAAGCTGCAGACTCTTGGCCATAACACCACGCTC
CTCCCTCCCGGCAGGAAGCTTTATCCACTTCCCCTTCCTCCTTCTTCCTC
CTCCTTCCCCTCCCTGTCCTCCCACCATCATCATCCTCCTCCTCCTCATC
CTCATCATCAGCCTCCTCAACAACCCCCCTACTCCTCCTTGTATCCTCCT
CCCCCCTCCTCCTCCTTCCCTTCCACCGCCGCGGGCGCTGCTGCCGCTGG
TGCTGCTGCT

Coding sequence (CDS) from alignment at scaffold_11:76880..78389+

>mRNA_5600 ID=mRNA_5600|Name=jgi.p|Nanoce1779_2|670907|organism=Nannochloropsis oceanica|type=CDS|length=3465bp|location=Sequence derived from alignment at scaffold_11:76880..78389+ (Nannochloropsis oceanica)
ATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTGGGGCA
GCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTTTGTGG
CAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACAACGGA
GGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGTTACTT
AGAAGGAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAGAGGAG
AAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGAAGGGA
GACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAAGACGG
CGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAATAGTG
TCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTAAAGAG
CGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCGCCGCC
CCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGGAGGAG
GAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAGGAGGA
GGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCTACTTC
TACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCGCGTTG
ACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACGATGAG
ATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTATGAGGA
CGGGGTACTCCTGAATTTTCTGCCTGACGGAACGCCAAACCCGGAACGCC
GACGAGGGCGACGAGGCATCAAAGTCAAAGCCCGCGACCCTCCTCCCCCG
TGGGTCGTGGAAAAGCTGCAGACTCTTGGCCATAACACCACGCTCCTCCC
TCCCGGCAGGAAGCTTTATCCACTTCCCCTTCCTCCTTCTTCCTCCTCCT
TCCCCTCCCTGTCCTCCCACCATCATCATCCTCCTCCTCCTCATCCTCAT
CATCAGCCTCCTCAACAACCCCCCTACTCCTCCTTGTATCCTCCTCCCCC
CTCCTCCTCCTTCCCTTCCACCGCCGCGGGCGCTGCTGCCGCTGGTGCTG
CTGCTATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACGGGCTG
GGGCAGCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCAGACTT
TGTGGCAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAACAACA
ACGGAGGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCGGCCGT
TACTTAGAAGGAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAAGATAG
AGGAGAAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGGGAAGA
AGGGAGACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTTTAGAA
GACGGCGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGCAACAA
TAGTGTCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAAGTTTA
AAGAGCGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAACCTCCG
CCGCCCCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATGACAGG
AGGAGGAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAGGGGAG
GAGGAGGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGGGCCCT
ACTTCTACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGATGGCG
CGTTGACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTTCAACG
ATGAGATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGCTGTAT
GAGGACGGGGTACTCCTGAATTTTCTGCCTGACGGAACGCCAAACCCGGA
ACGCCGACGAGGGCGACGAGGCATCAAAGTCAAAGCCCGCGACCCTCCTC
CCCCGTGGGTCGTGGAAAAGCTGCAGACTCTTGGCCATAACACCACGCTC
CTCCCTCCCGGCAGGAAGCTTTATCCACTTCCCCTTCCTCCTTCTTCCTC
CTCCTTCCCCTCCCTGTCCTCCCACCATCATCATCCTCCTCCTCCTCATC
CTCATCATCAGCCTCCTCAACAACCCCCCTACTCCTCCTTGTATCCTCCT
CCCCCCTCCTCCTCCTTCCCTTCCACCGCCGCGGGCGCTGCTGCCGCTGG
TGCTGCTGCTATGCCCTTGAAAGAGGAAACACCCGCAGTGCACACACACG
GGCTGGGGCAGCAGGGCAGCGCACCGACCAGGGTTACGGCAACCGTAGCA
GACTTTGTGGCAGCAGGTCCTTCGGGTGCTGGTGGTGGTGGTGACAACAA
CAACAACGGAGGGTTTCCCAGCGGACGACGGCGCCCGAAAAAAATCCCCG
GCCGTTACTTAGAAGGAGATGGGAGTGCCGGAAGCGAGGAGGAGCAGAAA
GATAGAGGAGAAGGAGCAGGGCGGCAAGGCCCTGGTGGGAAGGGGGGTGG
GAAGAAGGGAGACAAGAAGCGGAGGCGGGCGGCAGATGTGGCGGCATCTT
TAGAAGACGGCGCTGGAGGGGCTGGGCGCGGTGGGGGGAGCAACAGTAGC
AACAATAGTGTCGACAGCAACAGCAGTGGAGGGAGTAGCATCAAGAGCAA
GTTTAAAGAGCGACACGATTACACGGGGAACCCGGCGCCGCAGCCGCAAC
CTCCGCCGCCCCCGCCGCCCCCCTTTCGTCCGCCCGGCATGATGGGGATG
ACAGGAGGAGGAGGAGGAGGAGAAGTAGGAAAACCTGGAGGAGGAGGAAG
GGGAGGAGGAGGAGAAGGAGGAAGAGCGGGAGGAGCAGTGGCACCTCAGG
GCCCTACTTCTACGTTCCGCGGAGTCCGATGGAGCAAGCAACAGGGGCGA
TGGCGCGTTGACGTGCACTACAAGGGCAAGGACTTGTTTTTGGCGTATTT
CAACGATGAGATTGAGGCGGCCAGGGTGTTTGATGACGCGGCCTCAACGC
TGTATGAGGACGGGGTACTCCTGAATTTTCTGCCTGACGGAACGCCAAAC
CCGGAACGCCGACGAGGGCGACGAGGCATCAAAGTCAAAGCCCGCGACCC
TCCTCCCCCGTGGGTCGTGGAAAAGCTGCAGACTCTTGGCCATAACACCA
CGCTCCTCCCTCCCGGCAGGAAGCTTTATCCACTTCCCCTTCCTCCTTCT
TCCTCCTCCTTCCCCTCCCTGTCCTCCCACCATCATCATCCTCCTCCTCC
TCATCCTCATCATCAGCCTCCTCAACAACCCCCCTACTCCTCCTTGTATC
CTCCTCCCCCCTCCTCCTCCTTCCCTTCCACCGCCGCGGGCGCTGCTGCC
GCTGGTGCTGCTGCT

Synonyms

Publications