jgi.p|Nanoce1779_2|576051, mRNA_56 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576051
Unique Name	mRNA_56
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1880
Alignment location	scaffold_3:155783..157746 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576137
Track	FilteredModels2
ProteinId	576051

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:155783..157746 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576051	gene_56	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576051	mRNA_56-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_56	CDS_56	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:155783..157746+
coding sequence from alignment at scaffold_3:155783..157746+

mRNA sequence

>mRNA_56 ID=mRNA_56|Name=jgi.p|Nanoce1779_2|576051|organism=Nannochloropsis oceanica|type=mRNA|length=1880bp
CAGCAGTAGCAGCGGCAGCAGAAGCAGCAGGGGTAGCACGGCCTTTCTAT
GGCTGCCGCAGCAACAGCATCGCCTCCTGTCTACCACCAGCAGCAGCCGG
CGGCACCACCCGCATGAGTATTGGCCTACTCCAGCCCACATGCTTACACA
AAGAAGACACTACGCCACGGCGGGTTCCTCCTCCTCGTCCTTTGACGAGG
ACCTACCAGCCAACACAGGCACGTTTGGAGCCCAAGTCCCCTTCGCCTCC
CTTGGCCTTTCCCCCTGGCTTGTCTCCGCGTTGAACGCCGCAGGAAAACC
CATCTCGACGCATATCCAGGCCCTGAGCCTCCCGTCCATCCTGGAGGGCA
ACGACGTGGTGATAGGGAGTGAAACTGGAGCAGGCAAGACGCTGGCCTAC
CTTCTCCCTGTCTTGGACCTTGCTCACCGCGCAGCCCCCGCTCGGACCGA
GGCCCAGATACGCGAGATGGAATATTATATGGAGCGGAAAGCCGCATTGA
AAGGCGGGGCAGCGGGTTGGGAGGGGGATAATCGCTTGACGCCTTTGGCG
GAGGACTTTCCGTGGGAGACCCCGTTTGCAATCGTCCTCGTCCCCAACAG
GCAGTTAAGTGAGCAGGTGCTGCAGATGGGCAGGGAGTTGTTGACACAAC
AGAAAGGAGAGGGGGAGCGTGAGGGAAGACCGAGAATCGATGCGTTGGCG
GGGAGTGTGGAGGAGTGGCCGTTTCACCCGAAGACACGGCCGGCGCCGGA
TGTGCTTGTGTGCACCCCGGCTACTTTATCATTTTTCGATAGGGACATTG
GGCTGTTTAGTCGGGTGGGAATGGTGGTGGTGGATGAGGCCGACATGCTG
CTGGAGGGCGACTATGGGCGGCACTTGGATAGGATTTTGGTGGCCTTCAA
ACGCGCCGATAAACTCCACGTGATCCGCTCAGAGCCCTCCACCCAATACG
TTCTGGCGGCGGCCACTCTCCCTACCTACGGGTTGAAGTCCGTCGAGGAA
CTCGTCCGGAAACGGTTTCCCTCGGCGATGCGTGTAAATACGGACATGAT
GCACAGGCACCATCCGAAGCTCACTCAATTGTTTGTCGAAGCTCCGATAG
GACTGGATGAAAAGATTGGTATGCTCAAAAAGGTGTTGCAGAGATTGCAG
GAGAAGGGACGAGCATTAGCAGCGAAGGAGGGAGGAGAAGGGAAGGAGGA
CGACGAGGACGCTGCTTCTCTCCCTCTCCCTCTTCCCAAGACGATGATTT
TCCTCAACACGGCCCAAGCGGCCGCAAGGGTGCATGACGCCCTGGCACAG
GCAGACTTCCCCTCCGTTGCCTTTCACAAGGACATCCGTTCCAGTGACCG
CGAAGAGAACCTGCGGCAATTCCGCTCCAATTCTGTGCCGTTATTGGTGT
GTACAGACCTGGCGTCTCGGGGCTTGGACATACCGGACGTTAAGCAGGTG
ATTCAAGTTGAATTTGCGCCTAATGTTGTGCAGCACCTCCATCGGATAGG
GAGGGCCGTCAGGGCAGGGAGGGAGGGAAGAGCTGTGAATTTTTATGATG
AAGGGTCGACGGATTTGGTGGAAAGCCTGCAACTGGCCGGGGAGGAGAGC
CTGGATCGGTCGTTTTCCCGACAGCGAGGGTTCAGGAAGAAGGTGAAGAA
ATACGGGCGGGATTATTATAGGAAGCCGGGGGGGGCATATAGAGGGGAAG
GGTGGGAGGAGGAGGCAAAAGGGCGCCGTGTGAAGGGGGGGAAGGTCGTG
TTTGAGGAGGGGAGGGAAGGAGAGGAGAGGGAGGAGGAGGGAAGGAGAGG
AGGAGGATGACGAGGAGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAC
CAGAAAGAGGGCGGTTGGAATTGGTGGCTT

protein sequence of jgi.p|Nanoce1779_2|576051

>mRNA_56-protein ID=mRNA_56-protein|Name=jgi.p|Nanoce1779_2|576051|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MLTQRRHYATAGSSSSSFDEDLPANTGTFGAQVPFASLGLSPWLVSALNA
AGKPISTHIQALSLPSILEGNDVVIGSETGAGKTLAYLLPVLDLAHRAAP
ARTEAQIREMEYYMERKAALKGGAAGWEGDNRLTPLAEDFPWETPFAIVL
VPNRQLSEQVLQMGRELLTQQKGEGEREGRPRIDALAGSVEEWPFHPKTR
PAPDVLVCTPATLSFFDRDIGLFSRVGMVVVDEADMLLEGDYGRHLDRIL
VAFKRADKLHVIRSEPSTQYVLAAATLPTYGLKSVEELVRKRFPSAMRVN
TDMMHRHHPKLTQLFVEAPIGLDEKIGMLKKVLQRLQEKGRALAAKEGGE
GKEDDEDAASLPLPLPKTMIFLNTAQAAARVHDALAQADFPSVAFHKDIR
SSDREENLRQFRSNSVPLLVCTDLASRGLDIPDVKQVIQVEFAPNVVQHL
HRIGRAVRAGREGRAVNFYDEGSTDLVESLQLAGEESLDRSFSRQRGFRK
KVKKYGRDYYRKPGGAYRGEGWEEEAKGRRVKGGKVVFEEGREGEEREEE
GRRGGG*

mRNA from alignment at scaffold_3:155783..157746+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_56 ID=mRNA_56|Name=jgi.p|Nanoce1779_2|576051|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at scaffold_3:155783..157746+ (Nannochloropsis oceanica)
CAGCAGTAGCAGCGGCAGCAGAAGCAGCAGGGGTAGCACGGCCTTTCTAT
GGCTGCCGCAGCAACAGCATCGCCTCCTGTCTACCACCAGCAGCAGCCGG
CGGCACCACCCGCATGAGTATTGGCCTACTCCAGCCCACATGCTTACACA
AAGAAGACACTACGCCACGGCGGGTTCCTCCTCCTCGTCCTTTGACGAGG
ACCTACCAGCCAACACAGGCACGTTTGGAGCCCAAGTCCCCTTCGCCTCC
CTTGGCCTTTCCCCCTGGCTTGTCTCCGCGTTGAACGCCGCAGGAAAACC
CATCTCGACGCATATCCAGGCCCTGAGCCTCCCGTCCATCCTGGAGGGCA
ACGACGTGGTGATAGGGAGTGAAACTGGAGCAGGCAAGACGCTGGCCTAC
CTTCTCCCTGTCTTGGACCTTGCTCACCGCGCAGCCCCCGCTCGGACCGA
GGCCCAGATACGCGAGATGGAATATTATATGGAGCGGAAAGCCGCATTGA
AAGGCGGGGCAGCGGGTTGGGAGGGGGATAATCGCTTGACGCCTTTGGCG
GAGGACTTTCCGTGGGAGACCCCGTTTGCAATCGTCCTCGTCCCCAACAG
GCAGTTAAGTGAGCAGGTGCTGCAGATGGGCAGGGAGTTGTTGACACAAC
AGAAAGGAGAGGGGGAGCGTGAGGGAAGACCGAGAATCGATGCGTTGGCG
GGGAGTGTGGAGGAGTGGCCGTTTCACCCGAAGACACGGCCGGCGCCGGA
TGTGCTTGTGTGCACCCCGGCTACTTTATCATTTTTCGATAGGGACATTG
GGCTGTTTAGTCGGGTGGGAATGGTGGTGGTGGATGAGGCCGACATGCTG
CTGGAGGGCGACTATGGGCGGCACTTGGATAGGATTTTGGTGGCCTTCAA
ACGGTGAGGAAAAGGGAGGGAGGGAGAAAGGGTTATCATTTCATAAACTA
CTCACCTATCCCCCATTCCGTCCCTTGCTCCCTCAAGCGCCGATAAACTC
CACGTGATCCGCTCAGAGCCCTCCACCCAATACGTTCTGGCGGCGGCCAC
TCTCCCTACCTACGGGTTGAAGTCCGTCGAGGAACTCGTCCGGAAACGGT
TTCCCTCGGCGATGCGTGTAAATACGGACATGATGCACAGGCACCATCCG
AAGCTCACTCAATTGTTTGTCGAAGCTCCGATAGGACTGGATGAAAAGAT
TGGTATGCTCAAAAAGGTGTTGCAGAGATTGCAGGAGAAGGGACGAGCAT
TAGCAGCGAAGGAGGGAGGAGAAGGGAAGGAGGACGACGAGGACGCTGCT
TCTCTCCCTCTCCCTCTTCCCAAGACGATGATTTTCCTCAACACGGCCCA
AGCGGCCGCAAGGGTGCATGACGCCCTGGCACAGGCAGACTTCCCCTCCG
TTGCCTTTCACAAGGACATCCGTTCCAGTGACCGCGAAGAGAACCTGCGG
CAATTCCGCTCCAATTCTGTGCCGTTATTGGTGTGTACAGACCTGGCGTC
TCGGGGCTTGGACATACCGGACGTTAAGCAGGTGATTCAAGTTGAATTTG
CGCCTAATGTTGTGCAGCACCTCCATCGGATAGGGAGGGCCGTCAGGGCA
GGGAGGGAGGGAAGAGCTGTGAATTTTTATGATGAAGGGTCGACGGATTT
GGTGGAAAGCCTGCAACTGGCCGGGGAGGAGAGCCTGGATCGGTCGTTTT
CCCGACAGCGAGGGTTCAGGAAGAAGGTGAAGAAATACGGGCGGGATTAT
TATAGGAAGCCGGGGGGGGCATATAGAGGGGAAGGGTGGGAGGAGGAGGC
AAAAGGGCGCCGTGTGAAGGGGGGGAAGGTCGTGTTTGAGGAGGGGAGGG
AAGGAGAGGAGAGGGAGGAGGAGGGAAGGAGAGGAGGAGGATGACGAGGA
GAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGACCAGAAAGAGGGCGGTT
GGAATTGGTGGCTT

Coding sequence (CDS) from alignment at scaffold_3:155783..157746+

>mRNA_56 ID=mRNA_56|Name=jgi.p|Nanoce1779_2|576051|organism=Nannochloropsis oceanica|type=CDS|length=3342bp|location=Sequence derived from alignment at scaffold_3:155783..157746+ (Nannochloropsis oceanica)
ATGCTTACACAAAGAAGACACTACGCCACGGCGGGTTCCTCCTCCTCGTC
CTTTGACGAGGACCTACCAGCCAACACAGGCACGTTTGGAGCCCAAGTCC
CCTTCGCCTCCCTTGGCCTTTCCCCCTGGCTTGTCTCCGCGTTGAACGCC
GCAGGAAAACCCATCTCGACGCATATCCAGGCCCTGAGCCTCCCGTCCAT
CCTGGAGGGCAACGACGTGGTGATAGGGAGTGAAACTGGAGCAGGCAAGA
CGCTGGCCTACCTTCTCCCTGTCTTGGACCTTGCTCACCGCGCAGCCCCC
GCTCGGACCGAGGCCCAGATACGCGAGATGGAATATTATATGGAGCGGAA
AGCCGCATTGAAAGGCGGGGCAGCGGGTTGGGAGGGGGATAATCGCTTGA
CGCCTTTGGCGGAGGACTTTCCGTGGGAGACCCCGTTTGCAATCGTCCTC
GTCCCCAACAGGCAGTTAAGTGAGCAGGTGCTGCAGATGGGCAGGGAGTT
GTTGACACAACAGAAAGGAGAGGGGGAGCGTGAGGGAAGACCGAGAATCG
ATGCGTTGGCGGGGAGTGTGGAGGAGTGGCCGTTTCACCCGAAGACACGG
CCGGCGCCGGATGTGCTTGTGTGCACCCCGGCTACTTTATCATTTTTCGA
TAGGGACATTGGGCTGTTTAGTCGGGTGGGAATGGTGGTGGTGGATGAGG
CCGACATGCTGCTGGAGGGCGACTATGGGCGGCACTTGGATAGGATTTTG
GTGGCCTTCAAACGCGCCGATAAACTCCACGTGATCCGCTCAGAGCCCTC
CACCCAATACGTTCTGGCGGCGGCCACTCTCCCTACCTACGGGTTGAAGT
CCGTCGAGGAACTCGTCCGGAAACGGTTTCCCTCGGCGATGCGTGTAAAT
ACGGACATGATGCACAGGCACCATCCGAAGCTCACTCAATTGTTTGTCGA
AGCTCCGATAGGACTGGATGAAAAGATTGGTATGCTCAAAAAGGTGTTGC
AGAGATTGCAGGAGAAGGGACGAGCATTAGCAGCGAAGGAGGGAGGAGAA
GGGAAGGAGGACGACGAGGACGCTGCTTCTCTCCCTCTCCCTCTTCCCAA
GACGATGATTTTCCTCAACACGGCCCAAGCGGCCGCAAGGGTGCATGACG
CCCTGGCACAGGCAGACTTCCCCTCCGTTGCCTTTCACAAGGACATCCGT
TCCAGTGACCGCGAAGAGAACCTGCGGCAATTCCGCTCCAATTCTGTGCC
GTTATTGGTGTGTACAGACCTGGCGTCTCGGGGCTTGGACATACCGGACG
TTAAGCAGGTGATTCAAGTTGAATTTGCGCCTAATGTTGTGCAGCACCTC
CATCGGATAGGGAGGGCCGTCAGGGCAGGGAGGGAGGGAAGAGCTGTGAA
TTTTTATGATGAAGGGTCGACGGATTTGGTGGAAAGCCTGCAACTGGCCG
GGGAGGAGAGCCTGGATCGGTCGTTTTCCCGACAGCGAGGGTTCAGGAAG
AAGGTGAAGAAATACGGGCGGGATTATTATAGGAAGCCGGGGGGGGCATA
TAGAGGGGAAGGGTGGGAGGAGGAGGCAAAAGGGCGCCGTGTGAAGGGGG
GGAAGGTCGTGTTTGAGGAGGGGAGGGAAGGAGAGGAGAGGGAGGAGGAG
GGAAGGAGAGGAGGAGGATGAATGCTTACACAAAGAAGACACTACGCCAC
GGCGGGTTCCTCCTCCTCGTCCTTTGACGAGGACCTACCAGCCAACACAG
GCACGTTTGGAGCCCAAGTCCCCTTCGCCTCCCTTGGCCTTTCCCCCTGG
CTTGTCTCCGCGTTGAACGCCGCAGGAAAACCCATCTCGACGCATATCCA
GGCCCTGAGCCTCCCGTCCATCCTGGAGGGCAACGACGTGGTGATAGGGA
GTGAAACTGGAGCAGGCAAGACGCTGGCCTACCTTCTCCCTGTCTTGGAC
CTTGCTCACCGCGCAGCCCCCGCTCGGACCGAGGCCCAGATACGCGAGAT
GGAATATTATATGGAGCGGAAAGCCGCATTGAAAGGCGGGGCAGCGGGTT
GGGAGGGGGATAATCGCTTGACGCCTTTGGCGGAGGACTTTCCGTGGGAG
ACCCCGTTTGCAATCGTCCTCGTCCCCAACAGGCAGTTAAGTGAGCAGGT
GCTGCAGATGGGCAGGGAGTTGTTGACACAACAGAAAGGAGAGGGGGAGC
GTGAGGGAAGACCGAGAATCGATGCGTTGGCGGGGAGTGTGGAGGAGTGG
CCGTTTCACCCGAAGACACGGCCGGCGCCGGATGTGCTTGTGTGCACCCC
GGCTACTTTATCATTTTTCGATAGGGACATTGGGCTGTTTAGTCGGGTGG
GAATGGTGGTGGTGGATGAGGCCGACATGCTGCTGGAGGGCGACTATGGG
CGGCACTTGGATAGGATTTTGGTGGCCTTCAAACGCGCCGATAAACTCCA
CGTGATCCGCTCAGAGCCCTCCACCCAATACGTTCTGGCGGCGGCCACTC
TCCCTACCTACGGGTTGAAGTCCGTCGAGGAACTCGTCCGGAAACGGTTT
CCCTCGGCGATGCGTGTAAATACGGACATGATGCACAGGCACCATCCGAA
GCTCACTCAATTGTTTGTCGAAGCTCCGATAGGACTGGATGAAAAGATTG
GTATGCTCAAAAAGGTGTTGCAGAGATTGCAGGAGAAGGGACGAGCATTA
GCAGCGAAGGAGGGAGGAGAAGGGAAGGAGGACGACGAGGACGCTGCTTC
TCTCCCTCTCCCTCTTCCCAAGACGATGATTTTCCTCAACACGGCCCAAG
CGGCCGCAAGGGTGCATGACGCCCTGGCACAGGCAGACTTCCCCTCCGTT
GCCTTTCACAAGGACATCCGTTCCAGTGACCGCGAAGAGAACCTGCGGCA
ATTCCGCTCCAATTCTGTGCCGTTATTGGTGTGTACAGACCTGGCGTCTC
GGGGCTTGGACATACCGGACGTTAAGCAGGTGATTCAAGTTGAATTTGCG
CCTAATGTTGTGCAGCACCTCCATCGGATAGGGAGGGCCGTCAGGGCAGG
GAGGGAGGGAAGAGCTGTGAATTTTTATGATGAAGGGTCGACGGATTTGG
TGGAAAGCCTGCAACTGGCCGGGGAGGAGAGCCTGGATCGGTCGTTTTCC
CGACAGCGAGGGTTCAGGAAGAAGGTGAAGAAATACGGGCGGGATTATTA
TAGGAAGCCGGGGGGGGCATATAGAGGGGAAGGGTGGGAGGAGGAGGCAA
AAGGGCGCCGTGTGAAGGGGGGGAAGGTCGTGTTTGAGGAGGGGAGGGAA
GGAGAGGAGAGGGAGGAGGAGGGAAGGAGAGGAGGAGGATGA

Synonyms

Publications