jgi.p|Nanoce1779_2|31477, mRNA_5593 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|31477
Unique NamemRNA_5593
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1158
Alignment locationscaffold_11:28404..29710 -

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Properties
Property NameValue
TranscriptId31563
TrackFilteredModels2
ProteinId31477
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:28404..29710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|31477gene_5593Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|31477mRNA_5593-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5593CDS_5593Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5593 ID=mRNA_5593|Name=jgi.p|Nanoce1779_2|31477|organism=Nannochloropsis oceanica|type=mRNA|length=1158bp
TCAACTTCCTCCCTCCCGCCTTCCGTCCCTCCTTCGAGTCTTCCTCTTCC
TCTTTACTGAAGTTCTACTTTTCCCCCACCCCACTGAGTCAGATGACACC
TACTCCGCCTCACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCGCAG
TACGCCTTATTCTAGAAGCCCTTATTTCTTTCTTTCCCACAGAGCCTAAG
GGGGCCGTCGGGTCCCTCGACTGGACGCCGCGAGAACGACAACGACTAGC
GGTGGAGTCGCAAAGCTGGAGCTGTCCTCGTTGTGGCCCGGCCCAAGCCC
TCCTTCCCCCCCTCATTCACCCCAGCAGCAGCCCTTCTATTGAGAAAGTG
GACGAGGAAGGGGGGGAGGGAGGGGGGAAGGGAGTGGAGCAGAAGAGTAA
GTACGCCGAGGAGATCTCGCAGTTGTATATGAGGGAAATGCTGGACGGGA
CGGAGAGACAGGAGGAGGGGCAGGGAGGAGAGGGAGGAGGGGCAGGAGAG
GAAAGGAGTGGAAGAGGAGGAGGGGCAGAAGCCTCTCTCTCAGAATCATC
ATCCTCCTCTTCCTCCTCTGCTGCTGCTCCTGCTGTTTCCAGCGGTGCGG
TGGTCCCTCTCCCTTCTCTTTCTCCTGTGCTCGCCACAGGAGAAGGAGGA
GGAGGGGGAGGAGACCAGGGGGGACTGCGCCGTCGCGTGGCCACCACCAC
CTCTTCCTCCCCTTCCTCCTTGTCGACCTTCGCCTCAGCAGCTACGAGAC
CACCCACACAGCTGGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCA
ACAGCAACAGCAACAGCAGGAGGTGCGGGGGGGGAAACAGTACGGGTTAT
GGAGGTGGAGGAGGAGGAAGAAGGGAAGGAAGAGAAGGAAGACAAGCTCT
TCTACCTCGCCGTTGGCCTCTTCTGCCTGCTGGTGCTGTTGGTAGGACGA
AAGATGGCGAGATCATGGGCGAGGGAGGGAGGGGCGTACTTTGACGGGCT
AGGGTCATGAGCGGGTGATTGGGGAGGAGGGGGGCGGTGGAATTGCATGA
TTAGGTGGAAGCTCGGGGAGGAGTGGTGCTTTGTGTAGCAGGGAGAGAAG
GGAGGGGGGAGGATGGGAGGGAAGGAGGGAGTAGCAGCAGACTGCGCGTC
TGGCGATT
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protein sequence of jgi.p|Nanoce1779_2|31477

>mRNA_5593-protein ID=mRNA_5593-protein|Name=jgi.p|Nanoce1779_2|31477|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MTPTPPHPSLPPSLPPSRAVRLILEALISFFPTEPKGAVGSLDWTPRERQ
RLAVESQSWSCPRCGPAQALLPPLIHPSSSPSIEKVDEEGGEGGGKGVEQ
KSKYAEEISQLYMREMLDGTERQEEGQGGEGGGAGEERSGRGGGAEASLS
ESSSSSSSSAAAPAVSSGAVVPLPSLSPVLATGEGGGGGGDQGGLRRRVA
TTTSSSPSSLSTFASAATRPPTQLAAAEAAAAAAAATATATAGGAGGETV
RVMEVEEEEEGKEEKEDKLFYLAVGLFCLLVLLVGRKMARSWAREGGAYF
DGLGS*
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mRNA from alignment at scaffold_11:28404..29710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5593 ID=mRNA_5593|Name=jgi.p|Nanoce1779_2|31477|organism=Nannochloropsis oceanica|type=mRNA|length=1307bp|location=Sequence derived from alignment at scaffold_11:28404..29710- (Nannochloropsis oceanica)
TCAACTTCCTCCCTCCCGCCTTCCGTCCCTCCTTCGAGTCTTCCTCTTCC
TCTTTACTGAAGTTCTACTTTTCCCCCACCCCACTGAGTCAGATGACACC
TACTCCGCCTCACCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCGCAG
TACGCCTTATTCTAGAAGCCCTTATTTCTTTCTTTCCCACAGAGCCTAAG
GGGGCCGTCGGGTCCCTCGACTGGACGCCGCGAGAACGACAACGACTAGC
GGTGGAGGTAGGGGGGGGGGGGGGGGGGAGGAGGGAGGGACGGCTGGTCG
ACACATAAAAGGCCGAATACCTTGTCCGCGGGTTTGTCGTCATCGTCTCA
CATGTCCCTCTCTTTCTTGCCACTTTCCTCCCTCCTATCATTGACACCAT
TATAAGTCGCAAAGCTGGAGCTGTCCTCGTTGTGGCCCGGCCCAAGCCCT
CCTTCCCCCCCTCATTCACCCCAGCAGCAGCCCTTCTATTGAGAAAGTGG
ACGAGGAAGGGGGGGAGGGAGGGGGGAAGGGAGTGGAGCAGAAGAGTAAG
TACGCCGAGGAGATCTCGCAGTTGTATATGAGGGAAATGCTGGACGGGAC
GGAGAGACAGGAGGAGGGGCAGGGAGGAGAGGGAGGAGGGGCAGGAGAGG
AAAGGAGTGGAAGAGGAGGAGGGGCAGAAGCCTCTCTCTCAGAATCATCA
TCCTCCTCTTCCTCCTCTGCTGCTGCTCCTGCTGTTTCCAGCGGTGCGGT
GGTCCCTCTCCCTTCTCTTTCTCCTGTGCTCGCCACAGGAGAAGGAGGAG
GAGGGGGAGGAGACCAGGGGGGACTGCGCCGTCGCGTGGCCACCACCACC
TCTTCCTCCCCTTCCTCCTTGTCGACCTTCGCCTCAGCAGCTACGAGACC
ACCCACACAGCTGGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAA
CAGCAACAGCAACAGCAGGAGGTGCGGGGGGGGAAACAGTACGGGTTATG
GAGGTGGAGGAGGAGGAAGAAGGGAAGGAAGAGAAGGAAGACAAGCTCTT
CTACCTCGCCGTTGGCCTCTTCTGCCTGCTGGTGCTGTTGGTAGGACGAA
AGATGGCGAGATCATGGGCGAGGGAGGGAGGGGCGTACTTTGACGGGCTA
GGGTCATGAGCGGGTGATTGGGGAGGAGGGGGGCGGTGGAATTGCATGAT
TAGGTGGAAGCTCGGGGAGGAGTGGTGCTTTGTGTAGCAGGGAGAGAAGG
GAGGGGGGAGGATGGGAGGGAAGGAGGGAGTAGCAGCAGACTGCGCGTCT
GGCGATT
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Coding sequence (CDS) from alignment at scaffold_11:28404..29710-

>mRNA_5593 ID=mRNA_5593|Name=jgi.p|Nanoce1779_2|31477|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_11:28404..29710- (Nannochloropsis oceanica)
TCGCAAAGCTGGAGCTGTCCTCGTTGTGGCCCGGCCCAAGCCCTCCTTCC
CCCCCTCATTCACCCCAGCAGCAGCCCTTCTATTGAGAAAGTGGACGAGG
AAGGGGGGGAGGGAGGGGGGAAGGGAGTGGAGCAGAAGAGTAAGTACGCC
GAGGAGATCTCGCAGTTGTATATGAGGGAAATGCTGGACGGGACGGAGAG
ACAGGAGGAGGGGCAGGGAGGAGAGGGAGGAGGGGCAGGAGAGGAAAGGA
GTGGAAGAGGAGGAGGGGCAGAAGCCTCTCTCTCAGAATCATCATCCTCC
TCTTCCTCCTCTGCTGCTGCTCCTGCTGTTTCCAGCGGTGCGGTGGTCCC
TCTCCCTTCTCTTTCTCCTGTGCTCGCCACAGGAGAAGGAGGAGGAGGGG
GAGGAGACCAGGGGGGACTGCGCCGTCGCGTGGCCACCACCACCTCTTCC
TCCCCTTCCTCCTTGTCGACCTTCGCCTCAGCAGCTACGAGACCACCCAC
ACAGCTGGCAGCAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAA
CAGCAACAGCAGGAGGTGCGGGGGGGGAAACAGTACGGGTTATGGAGGTG
GAGGAGGAGGAAGAAGGGAAGGAAGAGAAGGAAGACAAGCTCTTCTACCT
CGCCGTTGGCCTCTTCTGCCTGCTGGTGCTGTTGGTAGGACGAAAGATGG
CGAGATCATGGGCGAGGGAGGGAGGGGCGTACTTTGACGGGCTAGGGTCA
TGAATGACACCTACTCCGCCTCACCCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCGCGCAGTACGCCTTATTCTAGAAGCCCTTATTTCTTTCTTTCCCA
CAGAGCCTAAGGGGGCCGTCGGGTCCCTCGACTGGACGCCGCGAGAACGA
CAACGACTAGCGGTGGAGTCGCAAAGCTGGAGCTGTCCTCGTTGTGGCCC
GGCCCAAGCCCTCCTTCCCCCCCTCATTCACCCCAGCAGCAGCCCTTCTA
TTGAGAAAGTGGACGAGGAAGGGGGGGAGGGAGGGGGGAAGGGAGTGGAG
CAGAAGAGTAAGTACGCCGAGGAGATCTCGCAGTTGTATATGAGGGAAAT
GCTGGACGGGACGGAGAGACAGGAGGAGGGGCAGGGAGGAGAGGGAGGAG
GGGCAGGAGAGGAAAGGAGTGGAAGAGGAGGAGGGGCAGAAGCCTCTCTC
TCAGAATCATCATCCTCCTCTTCCTCCTCTGCTGCTGCTCCTGCTGTTTC
CAGCGGTGCGGTGGTCCCTCTCCCTTCTCTTTCTCCTGTGCTCGCCACAG
GAGAAGGAGGAGGAGGGGGAGGAGACCAGGGGGGACTGCGCCGTCGCGTG
GCCACCACCACCTCTTCCTCCCCTTCCTCCTTGTCGACCTTCGCCTCAGC
AGCTACGAGACCACCCACACAGCTGGCAGCAGCAGAAGCAGCAGCAGCAG
CAGCAGCAGCAACAGCAACAGCAACAGCAGGAGGTGCGGGGGGGGAAACA
GTACGGGTTATGGAGGTGGAGGAGGAGGAAGAAGGGAAGGAAGAGAAGGA
AGACAAGCTCTTCTACCTCGCCGTTGGCCTCTTCTGCCTGCTGGTGCTGT
TGGTAGGACGAAAGATGGCGAGATCATGGGCGAGGGAGGGAGGGGCGTAC
TTTGACGGGCTAGGGTCATGAATGACACCTACTCCGCCTCACCCTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCGCGCAGTACGCCTTATTCTAGAAGCCC
TTATTTCTTTCTTTCCCACAGAGCCTAAGGGGGCCGTCGGGTCCCTCGAC
TGGACGCCGCGAGAACGACAACGACTAGCGGTGGAG
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Synonyms
Publications