jgi.p|Nanoce1779_2|589635, mRNA_5591 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589635
Unique Name	mRNA_5591
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2534
Alignment location	scaffold_11:19924..22457 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589721
Track	FilteredModels2
ProteinId	589635

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:19924..22457 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589635	gene_5591	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589635	mRNA_5591-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5591	CDS_5591	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:19924..22457+
coding sequence from alignment at scaffold_11:19924..22457+

mRNA sequence

>mRNA_5591 ID=mRNA_5591|Name=jgi.p|Nanoce1779_2|589635|organism=Nannochloropsis oceanica|type=mRNA|length=2534bp
CAGATAAACTCCATCACACAGGAAAGAGAATGCCTTTTATCATGCTGATT
ACTCGCGTTGGCTGCCTCCTGGCCTGCCTCATCCTGTCCCTCATGCCAGC
AGCGCACCCCCAAGTCACCGCCGATGGCTTCCACACCATCGCGCATCCCC
AAGTCAACGATAATGTCTATCAGCCTATCCTTAGCGCAAATTCCCTTGGC
GGTGAGAGCTGGGAGCGTGCCTATCGCTTGGTGCCAGACCTCTCCGATCC
CAGCGTCAAATACTTGGCTGGTGCTTTCCAGAGCTCTACCCTTTCCTTCC
CTGCTCCATCCATGGCCGCGTCCCTCAGCGCAATTGATAATGCGGCTAGC
AACACCACCCAAAATGCATTATTGTTGAAAATTCGACACGAGGATAACGC
TGTGATCTGGGCGCTCCCTATGGGAGCCAGCTCTGGGGGTGCTTCCAGGC
GTAATCAGGCATTAAGCGTCGCAGTGGGCCTCACAGGATCTGCTGTCTTT
GCAGTGGGCGATTTTTCCTCCACCTCCTTCCAACTAGGGGCATTTTTATT
CTCTAGTACCGGACCTTCGGATGCATGGATTGCCAAATTGGACGCAAGTG
ATGGCACTGTACTCTGGGCGCGCACTTTCGAAGGCACAGGTTTGGAAGCA
GCCAAAAGTGTTGTGGTAGATCCCCTGTCAGGCGACGTGATCGTCGCCGG
GGATTTTAATTCGTCAAGCGCGGCATTTAATCCGGATGTCAATGACATTG
GTGCCCGGGTACTCAATAATAGCGAGGACCCTAAGTGGGGTTCGGGCACG
GGCAGCGACATTTGGATCGCCAAGCTTGGGGCAGCAGACGGACAAGTACA
CTGGATGGGCCACGTATCGGGCTTGCGTTCGGAAGTGATGGGTTTTAACA
CAACGACTGGACAGTGGCCTGTAGCTTTCGACAGCCCGGGCCAGTCTCTG
GCTGTGGATGAAGACAATAATGTATATATGACGGGCTCCACCAATAGCAC
GGTCTTGACATACAACCCAGGAATGGATCCGCCTTCTAGTAATACATTCT
GGGACGGAGGAATAAGCAGGACGAAAAGTGATGGGATGATACTAAAGATT
CGCTGCAATACAGGCCTTCTCACCTGGGGAATGACGTTTGGCATGAGGGC
AACCAACGACTTTGGATATGCCGTGGCAGTTGCCCCAAACAACGGCAGCA
GTGACGTCTTTGTTGCGGGGACTGTAGGGGGTTCTCCTGTTTATTTCGGG
GACCCTGTGAGGAGTGTAAGTGGAATTCGTGCGGTCCAACCATTCGTAGC
CCGCCTCTCCGCACAAGATGGAACTCCGATGTGGATAACTTCTTTGGGTG
TAGCTGCAAGGACGAACCGAGTGCTGGGCTTAGCCGTGGATACGACGAGA
AGCCTAATTCATGCCGCAGGTTTTGTGGCATCGGGGAACTTGCCATTCGG
GCAAAGTTACGGGGGTTTAACCAACGACAGCTCTACTGGCGACGGCTTTT
TATGGACACTTGGAACAACAGAGGGCCATATCGAAGGTGGCATGGTAATC
GCAGGCATGGGACAGGACGTATTGCATAGTGTTGCCGTTTCACCAGATGT
GATTCATTTGTGTGGTTTCTTCAATTCTCCACGTGTACGCCTTGGTAATG
ACTCAAGCCTCATTCTAACAAATGTTGATTCGACGGGCACAACTTCTGAC
ATTTGGTGGGGATCTTTGCGGGCCCATGTTCCAATATTATGCCCTTCTCA
GACACCGACCGGTGTTCCTTCGAGCAGCCCGTCCGCTTCTCCTACGGCAT
CGCTCACCACTGAGGTGCACTCCGCGTCACCATCCTCGAGCCTATCGTCG
TCTCCGTCAAGCAGTCCGTCGTTGTCTCCGTCGAGCAGCCCGTCAATGTC
TCCCTCGAGCAGTCCGTCTGATTCCCCCTCGACGTCGCCAAACAGCAGTC
CGACGGAGATGCCCGCTGCATCTCCATCCGTAAGCTCTCCATCGTCTCTT
CTGAGCAGCCCGTCAGTGTCTCCCTCGAGCAGTCCGTCTGGTTCTCCCTC
GGCTGCCCCTTCTCTTGAAACAAACCCCGGAACGACTCCTTCTACAGTTG
ACTTTACCATTCTGGATGAGGCCAAAGAAAAGGAAAATGCCATGGCCAAA
CTCCGCAAGGAGGAACGCAATCGGCGCAAAGCTTTCATCATTGGATTTTC
CATCCTCGGTATTATGATAATCGCTGGATTGTCGGTATTCTATCGACGCC
AGCGAGCATCCCCGCCGGTTACGCCTGCATAGAAGGATACTCCAAATGCA
GTGTCTTGGCGGCCTGATTTCCTCATTTTAATTCATTACTCATGCGTCCC
AATGTATCGTTAATGATCTGGCGGTGGTGCTGCTTTGAATCTCTTTCCAC
AATTTCTTTAAATTCTTTAATAAATTTTATTCTCCTGAGTATTTGTGTAA
AAGTACGTAAGTGCAGAAAGGGGAGAAGAAAACAGTGCACGTCATGGAAC
GCCATGATTCCGCACCAGCAAAGAAACACGGCAC

protein sequence of jgi.p|Nanoce1779_2|589635

>mRNA_5591-protein ID=mRNA_5591-protein|Name=jgi.p|Nanoce1779_2|589635|organism=Nannochloropsis oceanica|type=polypeptide|length=751bp
MPFIMLITRVGCLLACLILSLMPAAHPQVTADGFHTIAHPQVNDNVYQPI
LSANSLGGESWERAYRLVPDLSDPSVKYLAGAFQSSTLSFPAPSMAASLS
AIDNAASNTTQNALLLKIRHEDNAVIWALPMGASSGGASRRNQALSVAVG
LTGSAVFAVGDFSSTSFQLGAFLFSSTGPSDAWIAKLDASDGTVLWARTF
EGTGLEAAKSVVVDPLSGDVIVAGDFNSSSAAFNPDVNDIGARVLNNSED
PKWGSGTGSDIWIAKLGAADGQVHWMGHVSGLRSEVMGFNTTTGQWPVAF
DSPGQSLAVDEDNNVYMTGSTNSTVLTYNPGMDPPSSNTFWDGGISRTKS
DGMILKIRCNTGLLTWGMTFGMRATNDFGYAVAVAPNNGSSDVFVAGTVG
GSPVYFGDPVRSVSGIRAVQPFVARLSAQDGTPMWITSLGVAARTNRVLG
LAVDTTRSLIHAAGFVASGNLPFGQSYGGLTNDSSTGDGFLWTLGTTEGH
IEGGMVIAGMGQDVLHSVAVSPDVIHLCGFFNSPRVRLGNDSSLILTNVD
STGTTSDIWWGSLRAHVPILCPSQTPTGVPSSSPSASPTASLTTEVHSAS
PSSSLSSSPSSSPSLSPSSSPSMSPSSSPSDSPSTSPNSSPTEMPAASPS
VSSPSSLLSSPSVSPSSSPSGSPSAAPSLETNPGTTPSTVDFTILDEAKE
KENAMAKLRKEERNRRKAFIIGFSILGIMIIAGLSVFYRRQRASPPVTPA
*

mRNA from alignment at scaffold_11:19924..22457+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5591 ID=mRNA_5591|Name=jgi.p|Nanoce1779_2|589635|organism=Nannochloropsis oceanica|type=mRNA|length=2534bp|location=Sequence derived from alignment at scaffold_11:19924..22457+ (Nannochloropsis oceanica)
CAGATAAACTCCATCACACAGGAAAGAGAATGCCTTTTATCATGCTGATT
ACTCGCGTTGGCTGCCTCCTGGCCTGCCTCATCCTGTCCCTCATGCCAGC
AGCGCACCCCCAAGTCACCGCCGATGGCTTCCACACCATCGCGCATCCCC
AAGTCAACGATAATGTCTATCAGCCTATCCTTAGCGCAAATTCCCTTGGC
GGTGAGAGCTGGGAGCGTGCCTATCGCTTGGTGCCAGACCTCTCCGATCC
CAGCGTCAAATACTTGGCTGGTGCTTTCCAGAGCTCTACCCTTTCCTTCC
CTGCTCCATCCATGGCCGCGTCCCTCAGCGCAATTGATAATGCGGCTAGC
AACACCACCCAAAATGCATTATTGTTGAAAATTCGACACGAGGATAACGC
TGTGATCTGGGCGCTCCCTATGGGAGCCAGCTCTGGGGGTGCTTCCAGGC
GTAATCAGGCATTAAGCGTCGCAGTGGGCCTCACAGGATCTGCTGTCTTT
GCAGTGGGCGATTTTTCCTCCACCTCCTTCCAACTAGGGGCATTTTTATT
CTCTAGTACCGGACCTTCGGATGCATGGATTGCCAAATTGGACGCAAGTG
ATGGCACTGTACTCTGGGCGCGCACTTTCGAAGGCACAGGTTTGGAAGCA
GCCAAAAGTGTTGTGGTAGATCCCCTGTCAGGCGACGTGATCGTCGCCGG
GGATTTTAATTCGTCAAGCGCGGCATTTAATCCGGATGTCAATGACATTG
GTGCCCGGGTACTCAATAATAGCGAGGACCCTAAGTGGGGTTCGGGCACG
GGCAGCGACATTTGGATCGCCAAGCTTGGGGCAGCAGACGGACAAGTACA
CTGGATGGGCCACGTATCGGGCTTGCGTTCGGAAGTGATGGGTTTTAACA
CAACGACTGGACAGTGGCCTGTAGCTTTCGACAGCCCGGGCCAGTCTCTG
GCTGTGGATGAAGACAATAATGTATATATGACGGGCTCCACCAATAGCAC
GGTCTTGACATACAACCCAGGAATGGATCCGCCTTCTAGTAATACATTCT
GGGACGGAGGAATAAGCAGGACGAAAAGTGATGGGATGATACTAAAGATT
CGCTGCAATACAGGCCTTCTCACCTGGGGAATGACGTTTGGCATGAGGGC
AACCAACGACTTTGGATATGCCGTGGCAGTTGCCCCAAACAACGGCAGCA
GTGACGTCTTTGTTGCGGGGACTGTAGGGGGTTCTCCTGTTTATTTCGGG
GACCCTGTGAGGAGTGTAAGTGGAATTCGTGCGGTCCAACCATTCGTAGC
CCGCCTCTCCGCACAAGATGGAACTCCGATGTGGATAACTTCTTTGGGTG
TAGCTGCAAGGACGAACCGAGTGCTGGGCTTAGCCGTGGATACGACGAGA
AGCCTAATTCATGCCGCAGGTTTTGTGGCATCGGGGAACTTGCCATTCGG
GCAAAGTTACGGGGGTTTAACCAACGACAGCTCTACTGGCGACGGCTTTT
TATGGACACTTGGAACAACAGAGGGCCATATCGAAGGTGGCATGGTAATC
GCAGGCATGGGACAGGACGTATTGCATAGTGTTGCCGTTTCACCAGATGT
GATTCATTTGTGTGGTTTCTTCAATTCTCCACGTGTACGCCTTGGTAATG
ACTCAAGCCTCATTCTAACAAATGTTGATTCGACGGGCACAACTTCTGAC
ATTTGGTGGGGATCTTTGCGGGCCCATGTTCCAATATTATGCCCTTCTCA
GACACCGACCGGTGTTCCTTCGAGCAGCCCGTCCGCTTCTCCTACGGCAT
CGCTCACCACTGAGGTGCACTCCGCGTCACCATCCTCGAGCCTATCGTCG
TCTCCGTCAAGCAGTCCGTCGTTGTCTCCGTCGAGCAGCCCGTCAATGTC
TCCCTCGAGCAGTCCGTCTGATTCCCCCTCGACGTCGCCAAACAGCAGTC
CGACGGAGATGCCCGCTGCATCTCCATCCGTAAGCTCTCCATCGTCTCTT
CTGAGCAGCCCGTCAGTGTCTCCCTCGAGCAGTCCGTCTGGTTCTCCCTC
GGCTGCCCCTTCTCTTGAAACAAACCCCGGAACGACTCCTTCTACAGTTG
ACTTTACCATTCTGGATGAGGCCAAAGAAAAGGAAAATGCCATGGCCAAA
CTCCGCAAGGAGGAACGCAATCGGCGCAAAGCTTTCATCATTGGATTTTC
CATCCTCGGTATTATGATAATCGCTGGATTGTCGGTATTCTATCGACGCC
AGCGAGCATCCCCGCCGGTTACGCCTGCATAGAAGGATACTCCAAATGCA
GTGTCTTGGCGGCCTGATTTCCTCATTTTAATTCATTACTCATGCGTCCC
AATGTATCGTTAATGATCTGGCGGTGGTGCTGCTTTGAATCTCTTTCCAC
AATTTCTTTAAATTCTTTAATAAATTTTATTCTCCTGAGTATTTGTGTAA
AAGTACGTAAGTGCAGAAAGGGGAGAAGAAAACAGTGCACGTCATGGAAC
GCCATGATTCCGCACCAGCAAAGAAACACGGCAC

Coding sequence (CDS) from alignment at scaffold_11:19924..22457+

>mRNA_5591 ID=mRNA_5591|Name=jgi.p|Nanoce1779_2|589635|organism=Nannochloropsis oceanica|type=CDS|length=2253bp|location=Sequence derived from alignment at scaffold_11:19924..22457+ (Nannochloropsis oceanica)
ATGCCTTTTATCATGCTGATTACTCGCGTTGGCTGCCTCCTGGCCTGCCT
CATCCTGTCCCTCATGCCAGCAGCGCACCCCCAAGTCACCGCCGATGGCT
TCCACACCATCGCGCATCCCCAAGTCAACGATAATGTCTATCAGCCTATC
CTTAGCGCAAATTCCCTTGGCGGTGAGAGCTGGGAGCGTGCCTATCGCTT
GGTGCCAGACCTCTCCGATCCCAGCGTCAAATACTTGGCTGGTGCTTTCC
AGAGCTCTACCCTTTCCTTCCCTGCTCCATCCATGGCCGCGTCCCTCAGC
GCAATTGATAATGCGGCTAGCAACACCACCCAAAATGCATTATTGTTGAA
AATTCGACACGAGGATAACGCTGTGATCTGGGCGCTCCCTATGGGAGCCA
GCTCTGGGGGTGCTTCCAGGCGTAATCAGGCATTAAGCGTCGCAGTGGGC
CTCACAGGATCTGCTGTCTTTGCAGTGGGCGATTTTTCCTCCACCTCCTT
CCAACTAGGGGCATTTTTATTCTCTAGTACCGGACCTTCGGATGCATGGA
TTGCCAAATTGGACGCAAGTGATGGCACTGTACTCTGGGCGCGCACTTTC
GAAGGCACAGGTTTGGAAGCAGCCAAAAGTGTTGTGGTAGATCCCCTGTC
AGGCGACGTGATCGTCGCCGGGGATTTTAATTCGTCAAGCGCGGCATTTA
ATCCGGATGTCAATGACATTGGTGCCCGGGTACTCAATAATAGCGAGGAC
CCTAAGTGGGGTTCGGGCACGGGCAGCGACATTTGGATCGCCAAGCTTGG
GGCAGCAGACGGACAAGTACACTGGATGGGCCACGTATCGGGCTTGCGTT
CGGAAGTGATGGGTTTTAACACAACGACTGGACAGTGGCCTGTAGCTTTC
GACAGCCCGGGCCAGTCTCTGGCTGTGGATGAAGACAATAATGTATATAT
GACGGGCTCCACCAATAGCACGGTCTTGACATACAACCCAGGAATGGATC
CGCCTTCTAGTAATACATTCTGGGACGGAGGAATAAGCAGGACGAAAAGT
GATGGGATGATACTAAAGATTCGCTGCAATACAGGCCTTCTCACCTGGGG
AATGACGTTTGGCATGAGGGCAACCAACGACTTTGGATATGCCGTGGCAG
TTGCCCCAAACAACGGCAGCAGTGACGTCTTTGTTGCGGGGACTGTAGGG
GGTTCTCCTGTTTATTTCGGGGACCCTGTGAGGAGTGTAAGTGGAATTCG
TGCGGTCCAACCATTCGTAGCCCGCCTCTCCGCACAAGATGGAACTCCGA
TGTGGATAACTTCTTTGGGTGTAGCTGCAAGGACGAACCGAGTGCTGGGC
TTAGCCGTGGATACGACGAGAAGCCTAATTCATGCCGCAGGTTTTGTGGC
ATCGGGGAACTTGCCATTCGGGCAAAGTTACGGGGGTTTAACCAACGACA
GCTCTACTGGCGACGGCTTTTTATGGACACTTGGAACAACAGAGGGCCAT
ATCGAAGGTGGCATGGTAATCGCAGGCATGGGACAGGACGTATTGCATAG
TGTTGCCGTTTCACCAGATGTGATTCATTTGTGTGGTTTCTTCAATTCTC
CACGTGTACGCCTTGGTAATGACTCAAGCCTCATTCTAACAAATGTTGAT
TCGACGGGCACAACTTCTGACATTTGGTGGGGATCTTTGCGGGCCCATGT
TCCAATATTATGCCCTTCTCAGACACCGACCGGTGTTCCTTCGAGCAGCC
CGTCCGCTTCTCCTACGGCATCGCTCACCACTGAGGTGCACTCCGCGTCA
CCATCCTCGAGCCTATCGTCGTCTCCGTCAAGCAGTCCGTCGTTGTCTCC
GTCGAGCAGCCCGTCAATGTCTCCCTCGAGCAGTCCGTCTGATTCCCCCT
CGACGTCGCCAAACAGCAGTCCGACGGAGATGCCCGCTGCATCTCCATCC
GTAAGCTCTCCATCGTCTCTTCTGAGCAGCCCGTCAGTGTCTCCCTCGAG
CAGTCCGTCTGGTTCTCCCTCGGCTGCCCCTTCTCTTGAAACAAACCCCG
GAACGACTCCTTCTACAGTTGACTTTACCATTCTGGATGAGGCCAAAGAA
AAGGAAAATGCCATGGCCAAACTCCGCAAGGAGGAACGCAATCGGCGCAA
AGCTTTCATCATTGGATTTTCCATCCTCGGTATTATGATAATCGCTGGAT
TGTCGGTATTCTATCGACGCCAGCGAGCATCCCCGCCGGTTACGCCTGCA
TAG

Synonyms

Publications