jgi.p|Nanoce1779_2|630407, mRNA_5590 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|630407
Unique Name	mRNA_5590
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2943
Alignment location	scaffold_11:15107..18049 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630493
Track	FilteredModels2
ProteinId	630407

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:15107..18049 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630407	gene_5590	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|630407	mRNA_5590-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5590	CDS_5590	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:15107..18049-
coding sequence from alignment at scaffold_11:15107..18049-

mRNA sequence

>mRNA_5590 ID=mRNA_5590|Name=jgi.p|Nanoce1779_2|630407|organism=Nannochloropsis oceanica|type=mRNA|length=2943bp
CTCCCTCCATACCTTCAACAGATCAATAATGCATTAAAGTTAAAAATAAC
AGGGCCGTATCACAACAAGGCATTTAAAGTAGAGTCTCACGCGGGCGCAA
CCGGCGGAGATGCGCGCCGGCGTCGATAGAAGACCAATAATGGAATGGCA
ATCATAACGCAAAGGACGGAAAATCCAACTATCAAGGCATGGCTACCATC
AAGAGACGTTTTGCGCCCATCAGGTCCATTCCTCACTCCATCCCCAACAG
TGTCCAAGTCAGGAGATTCCGACGTTGGGGAAGGAGTGACAGCCGGGAGA
ATAGTAGGTTGAGTAATGGGCGGAGCAGGCGGTCTGCTCGAGGTAGGCGG
CAAAGGGGCTCCCGGTGGGATGGTGGGCGTCGGGAGAGCTGGCGGCGGAG
AGGCCCCTGATGGGGTGCTGACCGTTCCCACCGTCGGCCCTGCCGACGGA
TCTCCCGGTGGAACAGTAGCTGATACCTCCGTCGGGCTACTGCTAGGCGA
CGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGC
TCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCC
GTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGA
GGGAGACGCTGACGGGCTGCTCGACGGAGACGCTGACGGGCTGATTGAGA
GCAAAGATGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGG
CTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGA
CGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGACG
CAGAGGGCATCTCCGTCGGGCTGCTGCTAGGCGACGCCGACGGAGAAGCA
GACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGACGA
CGGGCTCGCAGATGGAGACGCAGAGGGCATCTCCGTCGGTGAAACGCTAC
CGCCACCAGGACTCGAAGACACCGCTGTTGAACTGCTCGACGGAGACGCT
GACGGGCTGATTGAGAGCAAAGATGACGGGCTCGCGGATGGAGACGCAGA
GGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACG
GACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGG
CTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGA
CGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGC
TCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCC
GTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGA
CGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATG
GAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGA
GAAGCAGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGA
CGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTGC
TGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCT
GACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGA
GGGCATCTCCGTCGGGCTGCTGCTAGGCGACGCCGACGGAGAAGTAGACG
GACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGG
CTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGA
CGCCGACGGAGAAGCAGACGGACTGCTCGACGGAGACGCTGACGGGCTGC
TCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCC
GTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGA
GGGAGACGCTGACGGGCTGCTCGACGGAGACGACGATAGGCTCGCGGATG
GAGACGCAGAGTGCACCTCTGTCGGGCTAATTGATTGCGAGGCCGAGGGA
GAGACGGTGGCGTTGGAGAGATCTTGCATGAAGCGATAGACGCGTTCTGA
TTTTTCATTCCTCAGTAAATTCTCGTTGAGGGTAGGCTGGTAGACATGGT
CGGTTTCTTGGAGATGGGCGGCCGGTAGGAGTGACAGGATGAGGCAGGCC
AGGAGGCAGCCTATTTTGGTTATCATCATGGGAGGAAGATTCTTCATTTT
CTTTCCTGTATGATGATGTGTATGGGCACGCTCGTGGTTATCTGAGGGAC
GCCTTCTCTCTGAGAGAGTTGCGAGCCCAGGACACGGCCTTATGTGAGTG
TGTAAGCAGACGCTTGTCGTCACGTCCCCGTGTACAGGGGATGGGTACTG
GCATTGATGTATCATAAAGAATCAAATTAAGTGCGGCGATGAACAAGGAA
GACATCTCGTAGGGTAGAAACCATACCACAAGACAATATTGCTGGGCACG
CACAACAATTCGGCGTCCACTGCTGTAGTCTCTACAGTCCACCACTGTGT
GTAGTCATTCATGTGTTTTGAGGGGCGATAAAGTGAGTCGCACTGTCTTT
ACACTGGACACCTGACTGTCATATCAGTAGCTAACACTCGGCGCCTACAC
TTCTCGCCCTGCACAACATGCCCCCATGCGCGTCATGCATTTCAAGTACA
CACCACAGACACTCCGTGCGTTAATGCGCGCCACTTGGTGAATCCTCTGA
CAGAACAAATTGAGGATTTCAAATCCACCTCGTCCTCCTTTTCAAGAAAT
TTTGATTCATCCAATAACCATCAACAATTTCATTACTTTATCCTGTATCC
ACAGATTTGCCCATATCCTTTTCAGTTTCAAATTGAAACCGAC

protein sequence of jgi.p|Nanoce1779_2|630407

>mRNA_5590-protein ID=mRNA_5590-protein|Name=jgi.p|Nanoce1779_2|630407|organism=Nannochloropsis oceanica|type=polypeptide|length=608bp
MGGAGGLLEVGGKGAPGGMVGVGRAGGGEAPDGVLTVPTVGPADGSPGGT
VADTSVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGLLL
GDADGEADGLLEGDADGLLDGDADGLIESKDDGLADGDAEGISVGLLLGD
ADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGLLD
GDADGLLDGDDDGLADGDAEGISVGETLPPPGLEDTAVELLDGDADGLIE
SKDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGD
AEGISVGLLLGDADGEADGLLEGDADGLLDGDDDGLADGDAEGISVGLLL
GDADGEADGLLDGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGL
LDGDADGLLDGDDDGLADGDAEGISVGLLLGDADGEADGLLEGDADGLLD
GDDDGLADGDAEGISVGLLLGDADGEVDGLLEGDADGLLDGDDDGLADGD
AEGISVGLLLGDADGEADGLLDGDADGLLDGDDDGLADGDAEGISVGLLL
GDADGEADGLLEGDADGLLDGDDDRLADGDAECTSVGLIDCEAEGETVAL
ERSCMKR*

mRNA from alignment at scaffold_11:15107..18049-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5590 ID=mRNA_5590|Name=jgi.p|Nanoce1779_2|630407|organism=Nannochloropsis oceanica|type=mRNA|length=2943bp|location=Sequence derived from alignment at scaffold_11:15107..18049- (Nannochloropsis oceanica)
CTCCCTCCATACCTTCAACAGATCAATAATGCATTAAAGTTAAAAATAAC
AGGGCCGTATCACAACAAGGCATTTAAAGTAGAGTCTCACGCGGGCGCAA
CCGGCGGAGATGCGCGCCGGCGTCGATAGAAGACCAATAATGGAATGGCA
ATCATAACGCAAAGGACGGAAAATCCAACTATCAAGGCATGGCTACCATC
AAGAGACGTTTTGCGCCCATCAGGTCCATTCCTCACTCCATCCCCAACAG
TGTCCAAGTCAGGAGATTCCGACGTTGGGGAAGGAGTGACAGCCGGGAGA
ATAGTAGGTTGAGTAATGGGCGGAGCAGGCGGTCTGCTCGAGGTAGGCGG
CAAAGGGGCTCCCGGTGGGATGGTGGGCGTCGGGAGAGCTGGCGGCGGAG
AGGCCCCTGATGGGGTGCTGACCGTTCCCACCGTCGGCCCTGCCGACGGA
TCTCCCGGTGGAACAGTAGCTGATACCTCCGTCGGGCTACTGCTAGGCGA
CGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGC
TCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCC
GTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGA
GGGAGACGCTGACGGGCTGCTCGACGGAGACGCTGACGGGCTGATTGAGA
GCAAAGATGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGG
CTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGA
CGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGACG
CAGAGGGCATCTCCGTCGGGCTGCTGCTAGGCGACGCCGACGGAGAAGCA
GACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGACGA
CGGGCTCGCAGATGGAGACGCAGAGGGCATCTCCGTCGGTGAAACGCTAC
CGCCACCAGGACTCGAAGACACCGCTGTTGAACTGCTCGACGGAGACGCT
GACGGGCTGATTGAGAGCAAAGATGACGGGCTCGCGGATGGAGACGCAGA
GGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACG
GACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGG
CTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGA
CGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGC
TCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCC
GTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGA
CGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATG
GAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGA
GAAGCAGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGA
CGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTGC
TGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCT
GACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGA
GGGCATCTCCGTCGGGCTGCTGCTAGGCGACGCCGACGGAGAAGTAGACG
GACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGG
CTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGA
CGCCGACGGAGAAGCAGACGGACTGCTCGACGGAGACGCTGACGGGCTGC
TCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCC
GTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGA
GGGAGACGCTGACGGGCTGCTCGACGGAGACGACGATAGGCTCGCGGATG
GAGACGCAGAGTGCACCTCTGTCGGGCTAATTGATTGCGAGGCCGAGGGA
GAGACGGTGGCGTTGGAGAGATCTTGCATGAAGCGATAGACGCGTTCTGA
TTTTTCATTCCTCAGTAAATTCTCGTTGAGGGTAGGCTGGTAGACATGGT
CGGTTTCTTGGAGATGGGCGGCCGGTAGGAGTGACAGGATGAGGCAGGCC
AGGAGGCAGCCTATTTTGGTTATCATCATGGGAGGAAGATTCTTCATTTT
CTTTCCTGTATGATGATGTGTATGGGCACGCTCGTGGTTATCTGAGGGAC
GCCTTCTCTCTGAGAGAGTTGCGAGCCCAGGACACGGCCTTATGTGAGTG
TGTAAGCAGACGCTTGTCGTCACGTCCCCGTGTACAGGGGATGGGTACTG
GCATTGATGTATCATAAAGAATCAAATTAAGTGCGGCGATGAACAAGGAA
GACATCTCGTAGGGTAGAAACCATACCACAAGACAATATTGCTGGGCACG
CACAACAATTCGGCGTCCACTGCTGTAGTCTCTACAGTCCACCACTGTGT
GTAGTCATTCATGTGTTTTGAGGGGCGATAAAGTGAGTCGCACTGTCTTT
ACACTGGACACCTGACTGTCATATCAGTAGCTAACACTCGGCGCCTACAC
TTCTCGCCCTGCACAACATGCCCCCATGCGCGTCATGCATTTCAAGTACA
CACCACAGACACTCCGTGCGTTAATGCGCGCCACTTGGTGAATCCTCTGA
CAGAACAAATTGAGGATTTCAAATCCACCTCGTCCTCCTTTTCAAGAAAT
TTTGATTCATCCAATAACCATCAACAATTTCATTACTTTATCCTGTATCC
ACAGATTTGCCCATATCCTTTTCAGTTTCAAATTGAAACCGAC

Coding sequence (CDS) from alignment at scaffold_11:15107..18049-

>mRNA_5590 ID=mRNA_5590|Name=jgi.p|Nanoce1779_2|630407|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_11:15107..18049- (Nannochloropsis oceanica)
ATGGGCGGAGCAGGCGGTCTGCTCGAGGTAGGCGGCAAAGGGGCTCCCGG
TGGGATGGTGGGCGTCGGGAGAGCTGGCGGCGGAGAGGCCCCTGATGGGG
TGCTGACCGTTCCCACCGTCGGCCCTGCCGACGGATCTCCCGGTGGAACA
GTAGCTGATACCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGC
AGACGGACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACG
ACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTA
GGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGG
GCTGCTCGACGGAGACGCTGACGGGCTGATTGAGAGCAAAGATGACGGGC
TCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGAC
GCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGCT
CGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCG
TCGGGCTGCTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAC
GGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCAGATGG
AGACGCAGAGGGCATCTCCGTCGGTGAAACGCTACCGCCACCAGGACTCG
AAGACACCGCTGTTGAACTGCTCGACGGAGACGCTGACGGGCTGATTGAG
AGCAAAGATGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGG
GCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAG
ACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGAC
GCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGC
AGACGGACTGCTCGAGGGAGACGCTGACGGGCTGCTCGACGGAGACGACG
ACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTA
GGCGACGCCGACGGAGAAGCAGACGGACTGCTCGACGGAGACGCTGACGG
GCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCA
TCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGCAGACGGACTG
CTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGC
GGATGGAGACGCAGAGGGCATCTCCGTCGGGCTGCTGCTAGGCGACGCCG
ACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGGGCTGCTCGAC
GGAGACGACGACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGG
GCTGCTGCTAGGCGACGCCGACGGAGAAGTAGACGGACTGCTCGAGGGAG
ACGCTGACGGGCTGCTCGACGGAGACGACGACGGGCTCGCGGATGGAGAC
GCAGAGGGCATCTCCGTCGGGCTACTGCTAGGCGACGCCGACGGAGAAGC
AGACGGACTGCTCGACGGAGACGCTGACGGGCTGCTCGACGGAGACGACG
ACGGGCTCGCGGATGGAGACGCAGAGGGCATCTCCGTCGGGCTACTGCTA
GGCGACGCCGACGGAGAAGCAGACGGACTGCTCGAGGGAGACGCTGACGG
GCTGCTCGACGGAGACGACGATAGGCTCGCGGATGGAGACGCAGAGTGCA
CCTCTGTCGGGCTAATTGATTGCGAGGCCGAGGGAGAGACGGTGGCGTTG
GAGAGATCTTGCATGAAGCGATAG

Synonyms

Publications