jgi.p|Nanoce1779_2|577694, mRNA_559 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577694
Unique Name	mRNA_559
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1449
Alignment location	scaffold_3:1355634..1357327 -

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Properties


Property Name	Value
TranscriptId	577780
Track	FilteredModels2
ProteinId	577694

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:1355634..1357327 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577694	gene_559	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577694	mRNA_559-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_559	CDS_559	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:1355634..1357327-
coding sequence from alignment at scaffold_3:1355634..1357327-

mRNA sequence

>mRNA_559 ID=mRNA_559|Name=jgi.p|Nanoce1779_2|577694|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp
ACAGCACAGAATTTATGCCCTCTGTCGGCTGCCGTTCCAGCGCTGCGGCC
ATTTTGGATGTCGTCCCTCAAGCGTCCAAGCTTTGTAGTGACCACATGCA
GACACCTCTCTCCTCCCATACGTCACCGCTAGCATCGCATGTGGCTGCCA
AGTTTACGACTTGGCTGCAGGAGGATAACCACCCTTACCGTGCCCTTTGC
CAAGAAGATAGCGAGGCCCGTGTCCACGTCATTGTAAGGTTGCTTCACAA
GTTCTTGATGCTTTGCAAGGCTAGGCCTTCTCACCCTTTGGAGAGCCAGG
AGGTACTTGAGCTCTGGGAGAACAACAAGGAGCTGTTTGAATCCATAGTC
AATTATACTGCCACAACGCTGCACTGTTGGCGGTCATTCGTCTGTTTTTT
GAAGCAAAAGGTAGAAATGAGTGAGAGCATCAGCACTGCCATTGCCACCC
CTGCCACCACTACTAGGTGCGGCAAAGGTCAGACCGTAGAGAAGGTCATG
TCATCTGAGAACTTTGTCATTCTACCCGCAGTCGCTCCAACCATTACAAA
TCACTCCAGCCCCGTTATTGCCGGCACTGATCTCCTCAAAGATCTATCGT
GGGCCGTCGTCCGTCATAAATCGGGCTCAATGGCCAAGCTCCGACCGGTC
TACCAGCCCAAGACTGGTGAGGCAATGGTCGAGGAGGCGTTGAATACACG
AGAGCAGGCACACTTGCCGCCACAGACGTACCACCAAACAAAGGTCTATC
CGCCACCTAACCGCCCTGGAGCCACTGCCATACCAATCATGTGGCCACCA
TCGCCCAGCTTTGAATCCATGGGGAGGGTAATTTCACGATCACATTTACC
CCCCATCTCCTCTTCCTCCATGCGCATCAAGCTCACCAAGAGGAAACGCA
CGCTGGCCCAACACTTGCAACAGTCCGGCAAAAGGAGGAAAACAAATCTT
TTAGTACTTGATCGACGTGAGCAGCAGTTGCTGCGGAAATCGCTATCTCT
ACCACCTACTTCCTCCTCCATCATATTACAAGCGGACAATACAACCTCAC
CTGCGGGAGCCAAAATGGACGAAGGCATTGCGGATGATGAGAAAGTTGTG
ATCACCACTGCTGACACAGCTTGTGGCTGTTCTGGAGGTTCTATCTTGTC
GGCAGTAGAGGGATATGAATCTTACTATTGCAAAGAAACCACTGTGGCTC
AGACCTTACTCTCTTTAGCATCGGCATCCTGGAAGAAGAGCACTTCTACT
ATTGCCCGCAAGCCAGAAGCACAAGGCAAGAATAGCATCACAAGTACCAA
TAGCTGTCACCCTCCGAGCCATGATTCTATTCAAATTTAGTTTCACAAAC
GAAATGAGCATTGTGACGGATGTTTAAAGAGACTTCGCGCACGGGAATGT
AGTTATGAGAGGTCATCAGGCCCGGAAGTATGAGATGTGACTTTTCCCC

protein sequence of jgi.p|Nanoce1779_2|577694

>mRNA_559-protein ID=mRNA_559-protein|Name=jgi.p|Nanoce1779_2|577694|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MPSVGCRSSAAAILDVVPQASKLCSDHMQTPLSSHTSPLASHVAAKFTTW
LQEDNHPYRALCQEDSEARVHVIVRLLHKFLMLCKARPSHPLESQEVLEL
WENNKELFESIVNYTATTLHCWRSFVCFLKQKVEMSESISTAIATPATTT
RCGKGQTVEKVMSSENFVILPAVAPTITNHSSPVIAGTDLLKDLSWAVVR
HKSGSMAKLRPVYQPKTGEAMVEEALNTREQAHLPPQTYHQTKVYPPPNR
PGATAIPIMWPPSPSFESMGRVISRSHLPPISSSSMRIKLTKRKRTLAQH
LQQSGKRRKTNLLVLDRREQQLLRKSLSLPPTSSSIILQADNTTSPAGAK
MDEGIADDEKVVITTADTACGCSGGSILSAVEGYESYYCKETTVAQTLLS
LASASWKKSTSTIARKPEAQGKNSITSTNSCHPPSHDSIQI*

mRNA from alignment at scaffold_3:1355634..1357327-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_559 ID=mRNA_559|Name=jgi.p|Nanoce1779_2|577694|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp|location=Sequence derived from alignment at scaffold_3:1355634..1357327- (Nannochloropsis oceanica)
ACAGCACAGAATTTATGCCCTCTGTCGGCTGCCGTTCCAGCGCTGCGGCC
ATTTTGGATGTCGTCCCTCAAGCGTCCAAGCTTTGTAGTGACCACATGCA
GACACCTCTCTCCTCCCATACGTCACCGCTAGCATCGCATGTGGCTGCCA
AGTTTACGACTTGGCTGCAGGAGGATAACCACCCTTACCGTGCCCTTTGC
CAAGAAGATAGCGAGGCAAGTCGATAGCCCATTAAGAAATATTCCATGCC
ATCCTTAACAATCGCCACACTTTCACATTATTCGTCGCTCATCAATCAAA
TTTGCTTTTAACTCAATATCCCTCTTCGATAGGCCCGTGTCCACGTCATT
GTAAGGTTGCTTCACAAGTTCTTGATGCTTTGCAAGGCTAGGCCTTCTCA
CCCTTTGGAGAGCCAGGAGGTACTTGAGCTCTGGGAGAACAACAAGGAGC
TGTTTGAATCCATAGTCAATTATACTGCCACAACGCTGCACTGTTGGTAA
GAATGAAGGGCAATGGAGGACCGGGGCAGCTTTGTAAAAAGACCAATGTA
GTGATATTTTGAGCATCTAATCAGCTCTTCTTCTTTTTTCTTGCACATCC
CCGCACCGAAATTTCTCATGACAGGCGGTCATTCGTCTGTTTTTTGAAGC
AAAAGGTAGAAATGAGTGAGAGCATCAGCACTGCCATTGCCACCCCTGCC
ACCACTACTAGGTGCGGCAAAGGTCAGACCGTAGAGAAGGTCATGTCATC
TGAGAACTTTGTCATTCTACCCGCAGTCGCTCCAACCATTACAAATCACT
CCAGCCCCGTTATTGCCGGCACTGATCTCCTCAAAGATCTATCGTGGGCC
GTCGTCCGTCATAAATCGGGCTCAATGGCCAAGCTCCGACCGGTCTACCA
GCCCAAGACTGGTGAGGCAATGGTCGAGGAGGCGTTGAATACACGAGAGC
AGGCACACTTGCCGCCACAGACGTACCACCAAACAAAGGTCTATCCGCCA
CCTAACCGCCCTGGAGCCACTGCCATACCAATCATGTGGCCACCATCGCC
CAGCTTTGAATCCATGGGGAGGGTAATTTCACGATCACATTTACCCCCCA
TCTCCTCTTCCTCCATGCGCATCAAGCTCACCAAGAGGAAACGCACGCTG
GCCCAACACTTGCAACAGTCCGGCAAAAGGAGGAAAACAAATCTTTTAGT
ACTTGATCGACGTGAGCAGCAGTTGCTGCGGAAATCGCTATCTCTACCAC
CTACTTCCTCCTCCATCATATTACAAGCGGACAATACAACCTCACCTGCG
GGAGCCAAAATGGACGAAGGCATTGCGGATGATGAGAAAGTTGTGATCAC
CACTGCTGACACAGCTTGTGGCTGTTCTGGAGGTTCTATCTTGTCGGCAG
TAGAGGGATATGAATCTTACTATTGCAAAGAAACCACTGTGGCTCAGACC
TTACTCTCTTTAGCATCGGCATCCTGGAAGAAGAGCACTTCTACTATTGC
CCGCAAGCCAGAAGCACAAGGCAAGAATAGCATCACAAGTACCAATAGCT
GTCACCCTCCGAGCCATGATTCTATTCAAATTTAGTTTCACAAACGAAAT
GAGCATTGTGACGGATGTTTAAAGAGACTTCGCGCACGGGAATGTAGTTA
TGAGAGGTCATCAGGCCCGGAAGTATGAGATGTGACTTTTCCCC

Coding sequence (CDS) from alignment at scaffold_3:1355634..1357327-

>mRNA_559 ID=mRNA_559|Name=jgi.p|Nanoce1779_2|577694|organism=Nannochloropsis oceanica|type=CDS|length=3978bp|location=Sequence derived from alignment at scaffold_3:1355634..1357327- (Nannochloropsis oceanica)
GCGGTCATTCGTCTGTTTTTTGAAGCAAAAGGTAGAAATGAGTGAGAGCA
TCAGCACTGCCATTGCCACCCCTGCCACCACTACTAGGTGCGGCAAAGGT
CAGACCGTAGAGAAGGTCATGTCATCTGAGAACTTTGTCATTCTACCCGC
AGTCGCTCCAACCATTACAAATCACTCCAGCCCCGTTATTGCCGGCACTG
ATCTCCTCAAAGATCTATCGTGGGCCGTCGTCCGTCATAAATCGGGCTCA
ATGGCCAAGCTCCGACCGGTCTACCAGCCCAAGACTGGTGAGGCAATGGT
CGAGGAGGCGTTGAATACACGAGAGCAGGCACACTTGCCGCCACAGACGT
ACCACCAAACAAAGGTCTATCCGCCACCTAACCGCCCTGGAGCCACTGCC
ATACCAATCATGTGGCCACCATCGCCCAGCTTTGAATCCATGGGGAGGGT
AATTTCACGATCACATTTACCCCCCATCTCCTCTTCCTCCATGCGCATCA
AGCTCACCAAGAGGAAACGCACGCTGGCCCAACACTTGCAACAGTCCGGC
AAAAGGAGGAAAACAAATCTTTTAGTACTTGATCGACGTGAGCAGCAGTT
GCTGCGGAAATCGCTATCTCTACCACCTACTTCCTCCTCCATCATATTAC
AAGCGGACAATACAACCTCACCTGCGGGAGCCAAAATGGACGAAGGCATT
GCGGATGATGAGAAAGTTGTGATCACCACTGCTGACACAGCTTGTGGCTG
TTCTGGAGGTTCTATCTTGTCGGCAGTAGAGGGATATGAATCTTACTATT
GCAAAGAAACCACTGTGGCTCAGACCTTACTCTCTTTAGCATCGGCATCC
TGGAAGAAGAGCACTTCTACTATTGCCCGCAAGCCAGAAGCACAAGGCAA
GAATAGCATCACAAGTACCAATAGCTGTCACCCTCCGAGCCATGATTCTA
TTCAAATTTAGGCCCGTGTCCACGTCATTGTAAGGTTGCTTCACAAGTTC
TTGATGCTTTGCAAGGCTAGGCCTTCTCACCCTTTGGAGAGCCAGGAGGT
ACTTGAGCTCTGGGAGAACAACAAGGAGCTGTTTGAATCCATAGTCAATT
ATACTGCCACAACGCTGCACTGTTGATGCCCTCTGTCGGCTGCCGTTCCA
GCGCTGCGGCCATTTTGGATGTCGTCCCTCAAGCGTCCAAGCTTTGTAGT
GACCACATGCAGACACCTCTCTCCTCCCATACGTCACCGCTAGCATCGCA
TGTGGCTGCCAAGTTTACGACTTGGCTGCAGGAGGATAACCACCCTTACC
GTGCCCTTTGCCAAGAAGATAGCGAGGCGGTCATTCGTCTGTTTTTTGAA
GCAAAAGGTAGAAATGAGTGAGAGCATCAGCACTGCCATTGCCACCCCTG
CCACCACTACTAGGTGCGGCAAAGGTCAGACCGTAGAGAAGGTCATGTCA
TCTGAGAACTTTGTCATTCTACCCGCAGTCGCTCCAACCATTACAAATCA
CTCCAGCCCCGTTATTGCCGGCACTGATCTCCTCAAAGATCTATCGTGGG
CCGTCGTCCGTCATAAATCGGGCTCAATGGCCAAGCTCCGACCGGTCTAC
CAGCCCAAGACTGGTGAGGCAATGGTCGAGGAGGCGTTGAATACACGAGA
GCAGGCACACTTGCCGCCACAGACGTACCACCAAACAAAGGTCTATCCGC
CACCTAACCGCCCTGGAGCCACTGCCATACCAATCATGTGGCCACCATCG
CCCAGCTTTGAATCCATGGGGAGGGTAATTTCACGATCACATTTACCCCC
CATCTCCTCTTCCTCCATGCGCATCAAGCTCACCAAGAGGAAACGCACGC
TGGCCCAACACTTGCAACAGTCCGGCAAAAGGAGGAAAACAAATCTTTTA
GTACTTGATCGACGTGAGCAGCAGTTGCTGCGGAAATCGCTATCTCTACC
ACCTACTTCCTCCTCCATCATATTACAAGCGGACAATACAACCTCACCTG
CGGGAGCCAAAATGGACGAAGGCATTGCGGATGATGAGAAAGTTGTGATC
ACCACTGCTGACACAGCTTGTGGCTGTTCTGGAGGTTCTATCTTGTCGGC
AGTAGAGGGATATGAATCTTACTATTGCAAAGAAACCACTGTGGCTCAGA
CCTTACTCTCTTTAGCATCGGCATCCTGGAAGAAGAGCACTTCTACTATT
GCCCGCAAGCCAGAAGCACAAGGCAAGAATAGCATCACAAGTACCAATAG
CTGTCACCCTCCGAGCCATGATTCTATTCAAATTTAGGCCCGTGTCCACG
TCATTGTAAGGTTGCTTCACAAGTTCTTGATGCTTTGCAAGGCTAGGCCT
TCTCACCCTTTGGAGAGCCAGGAGGTACTTGAGCTCTGGGAGAACAACAA
GGAGCTGTTTGAATCCATAGTCAATTATACTGCCACAACGCTGCACTGTT
GATGCCCTCTGTCGGCTGCCGTTCCAGCGCTGCGGCCATTTTGGATGTCG
TCCCTCAAGCGTCCAAGCTTTGTAGTGACCACATGCAGACACCTCTCTCC
TCCCATACGTCACCGCTAGCATCGCATGTGGCTGCCAAGTTTACGACTTG
GCTGCAGGAGGATAACCACCCTTACCGTGCCCTTTGCCAAGAAGATAGCG
AGGCGGTCATTCGTCTGTTTTTTGAAGCAAAAGGTAGAAATGAGTGAGAG
CATCAGCACTGCCATTGCCACCCCTGCCACCACTACTAGGTGCGGCAAAG
GTCAGACCGTAGAGAAGGTCATGTCATCTGAGAACTTTGTCATTCTACCC
GCAGTCGCTCCAACCATTACAAATCACTCCAGCCCCGTTATTGCCGGCAC
TGATCTCCTCAAAGATCTATCGTGGGCCGTCGTCCGTCATAAATCGGGCT
CAATGGCCAAGCTCCGACCGGTCTACCAGCCCAAGACTGGTGAGGCAATG
GTCGAGGAGGCGTTGAATACACGAGAGCAGGCACACTTGCCGCCACAGAC
GTACCACCAAACAAAGGTCTATCCGCCACCTAACCGCCCTGGAGCCACTG
CCATACCAATCATGTGGCCACCATCGCCCAGCTTTGAATCCATGGGGAGG
GTAATTTCACGATCACATTTACCCCCCATCTCCTCTTCCTCCATGCGCAT
CAAGCTCACCAAGAGGAAACGCACGCTGGCCCAACACTTGCAACAGTCCG
GCAAAAGGAGGAAAACAAATCTTTTAGTACTTGATCGACGTGAGCAGCAG
TTGCTGCGGAAATCGCTATCTCTACCACCTACTTCCTCCTCCATCATATT
ACAAGCGGACAATACAACCTCACCTGCGGGAGCCAAAATGGACGAAGGCA
TTGCGGATGATGAGAAAGTTGTGATCACCACTGCTGACACAGCTTGTGGC
TGTTCTGGAGGTTCTATCTTGTCGGCAGTAGAGGGATATGAATCTTACTA
TTGCAAAGAAACCACTGTGGCTCAGACCTTACTCTCTTTAGCATCGGCAT
CCTGGAAGAAGAGCACTTCTACTATTGCCCGCAAGCCAGAAGCACAAGGC
AAGAATAGCATCACAAGTACCAATAGCTGTCACCCTCCGAGCCATGATTC
TATTCAAATTTAGGCCCGTGTCCACGTCATTGTAAGGTTGCTTCACAAGT
TCTTGATGCTTTGCAAGGCTAGGCCTTCTCACCCTTTGGAGAGCCAGGAG
GTACTTGAGCTCTGGGAGAACAACAAGGAGCTGTTTGAATCCATAGTCAA
TTATACTGCCACAACGCTGCACTGTTGATGCCCTCTGTCGGCTGCCGTTC
CAGCGCTGCGGCCATTTTGGATGTCGTCCCTCAAGCGTCCAAGCTTTGTA
GTGACCACATGCAGACACCTCTCTCCTCCCATACGTCACCGCTAGCATCG
CATGTGGCTGCCAAGTTTACGACTTGGCTGCAGGAGGATAACCACCCTTA
CCGTGCCCTTTGCCAAGAAGATAGCGAG

Synonyms

Publications