Properties
| Property Name | Value |
|---|
| TranscriptId | 630492 |
| Track | FilteredModels2 |
| ProteinId | 630406 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:11911..15053 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5589 ID=mRNA_5589|Name=jgi.p|Nanoce1779_2|630406|organism=Nannochloropsis oceanica|type=mRNA|length=2442bp
TTGGAATCATATTCGTCGCTCCTCCTTCCCATCCCCCCTTGTGTTCTCCT
CGCTCTCTCCGTCCCCCTGACTGCACTCATAATTGTACCCTGCTTCTGCA
AGCAAATCATTTTCGTAACTTTTGGCTTCTTAATTTGTTAGGGTGAAGAA
ATTTATTCTTCCCTCTTTCTCTAATCTTACATTATCTACCGGACTCTGGT
TCTCGCTGGGAGCACTGCATGACCGTCGTCCTTTCAGGTGTGATTTAGTT
GGGGGGGTATTTCCAGGTGTTGTGCTGCGCTATTCCAACAATACTAAAGG
CTCTTTTTTTGGTTTTTTCATCGAACATATAGGCTATAGTCATAAAACTT
GACAAATTGGAACTAGCTTTTATTTCGAAAAGCCAGCAGAGTATCTGTGG
CGGCTTTTAAAAATTTGTGTAGGGGCAATGGGGACGACTCTGGAGAGTCC
TTCTCCATCTCTCAGCCACCGCACAATTATCGCTGCATATCGTCACAGGC
CGCTTAGTTTCAGCAGTGTCGCATGTTTCTGTCCATATTATGCAACGAAC
GCCTGCCAATGCCGGGCGGGACGGTACCTCTCGAGGAAGCGAGCGAAGAG
GCAGCGAGAGCAAAAGCAACAGCAGCACCACCAGCAGCAGTAGTAGCAGC
AGCGTAAGGACCAGCACCAGCTCCAGGACCAGGACTCTCTCGACACCAGG
GACGTCATGGAGTGCGTGGATGGAGTTTGCAAGTTCGTACCAAAAAGCCA
GCGTGGCGGTGGGCATAAGGGAGTGGGGGAGAACGATGAGAACGTTGCCC
CCGCCTTGCCCCTAGTTGCGGTCGGGGACAAGCTTCCCATGCCGCTACCC
CTGGAGCAGCTTGAGGAGGGAGGGAAGGCAACGACGCTGCAGAGCCTTTG
TTCTGAGAGAGGGGATCGAGGCCGAGTAGTCGTGTTGGATCTCTGGTCCA
ATGCCTGCGTCCGGTGCCCTGAGGCCCTGGATAAGCTGAACGCCCTCGCC
GAGAGAATGAAGGAAGACGTGGAGAAGGGGCTCGTTATCTTTGCTTCTGT
CAACATTGATGATAAAGCCAAGGCCCGGGGGCTGATCGCAGAGAGGAAGT
GGACCAGCCTCTCTCATCTCTTCGTCGATGCCGCCACCAAAGAGATGCTC
AAGGCACGCTTTGGCTTGACGAGTGTACCTTTTGTGATGGTGTTTGACCA
GGAGGGCACGCTTAGCCAGATGGGCAACCCCAAGAAGATCGACTTTGATG
CCCTCCCGGCCATGTGGAAGGCGAAGAGACAGGTAGGGAATGAGGCGAAA
AAAGAAGGGGGGATAGATCGGCAGAAGAAGGAGGATGTGGCGAAAGAGGA
GATGCCTGTCAAGGCCTTGCAGGCTTTTACGTTGGACGAGGACTTTTGAG
TGGAAGGAAAAAGGAAGGAAAAGAACCGATGAAATAAAGCAAAGGGTTCG
CCACACTCAAGAAAATAAAGCACTGTTGGAGAGGGAGTAAAGCTCCGCAG
GTTTTCCTTTTTGGGACGCTGGAACGATGAATGAATGCTTCTCACACATT
TTCTGGTGACTTTTAAGGGAGTCGCTGCTAGCAAGAGTGAGGCAGCAAAA
TAGTAACATCATCATTTACCATAAATGCATTACTGTGGCACCAATCATAG
AAGGTGTGTTGCAAATAAGTACATCGCACATTTAGACAATGGGGTGGACA
TTGGATCACTTGGAGTTATAAATCATCGGAAAACTCATCCTGAGCGTTTC
GCCCTTATGAAATCTCAGACATGTCTCCTCCCTCCCGATGTAACACAAGT
GCGGATTTGATAAGCCTCGCTTCCTCTCTCGCTATGTATTGCGCATAATA
CACATGAAAATTGAGCTCACGGCACCTCACCGTTGACGACGACTTCGCTA
CCGCTACCCGCTACCTTGGCAGCTGGGCGATTTGTGCACGCCGAGGTCGA
CCACAATATGTCCAGTTCGTCGGATTATCCGATGACAATCAGTTCTAGTC
ATGATTCGCGCGCATTAGCACCCATTCGCCCATTCGGCACCGTACCAACA
GAGCCCCCCCCCCGGTCCAGAATCGAGCCAGATACAATGATGTGTCCTGA
GTAGCAGGAATGAATTCCTCATCACCAATCCCCACATACAACCGAAGTCC
TCACGCATTTACCAGCCACAGCGAGAATCGTTTACTGCAGGGCAGGCTAA
AGGGAAGAATCCTTCCAAAAAGACAATGAAGTGAAGAGGAGAAGAATACT
TAACCTGGAGAAAGAGAAAACCTGGAGCAGAAAGCGCGTGCCCAATCTAT
TTTCTCATGCTGCGAGAAAAGGAGTGTAACCGTGGCTGGTTCAAAAAATG
GGTGCAGTACTGTCTCGCTCCTCTCGAGAGAAAGATCATTTCTCTGGGAG
AGGGGAGATCAGCCAGAGAGTCCCTGGGCAGGGACCGGTGCC back to topprotein sequence of jgi.p|Nanoce1779_2|630406 >mRNA_5589-protein ID=mRNA_5589-protein|Name=jgi.p|Nanoce1779_2|630406|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MECVDGVCKFVPKSQRGGGHKGVGENDENVAPALPLVAVGDKLPMPLPLE
QLEEGGKATTLQSLCSERGDRGRVVVLDLWSNACVRCPEALDKLNALAER
MKEDVEKGLVIFASVNIDDKAKARGLIAERKWTSLSHLFVDAATKEMLKA
RFGLTSVPFVMVFDQEGTLSQMGNPKKIDFDALPAMWKAKRQVGNEAKKE
GGIDRQKKEDVAKEEMPVKALQAFTLDEDF* back to topmRNA from alignment at scaffold_11:11911..15053+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5589 ID=mRNA_5589|Name=jgi.p|Nanoce1779_2|630406|organism=Nannochloropsis oceanica|type=mRNA|length=3143bp|location=Sequence derived from alignment at scaffold_11:11911..15053+ (Nannochloropsis oceanica)
TTGGAATCATATTCGTCGCTCCTCCTTCCCATCCCCCCTTGTGTTCTCCT
CGCTCTCTCCGTCCCCCTGACTGCACTCATAATTGTACCCTGCTTCTGCA
AGCAAATCATTTTCGTAACTTTTGGCTTCTTAATTTGTTAGGGTGAAGAA
ATTTATTCTTCCCTCTTTCTCTAATCTTACATTATCTACCGGACTCTGGT
TCTCGCTGGGAGCACTGCATGACCGTCGTCCTTTCAGGTGTGATTTAGTT
GGGGGGGTATTTCCAGGTGTTGTGCTGCGCTATTCCAACAATACTAAAGG
CTCTTTTTTTGGTTTTTTCATCGAACATATAGGCTATAGTCATAAAACTT
GACAAATTGGAACTAGCTTTTATTTCGAAAAGCCAGCAGAGTATCTGTGG
CGGCTTTTAAAAATTTGTGTAGGGGCAATGGGGACGACTCTGGAGAGTCC
TTCTCCATCTCTCAGCCACCGCACAATTATCGCTGCATATCGTCACAGGC
CGCTTAGTTTCAGCAGTGTCGCATGTTTCTGTCCATATTATGCAACGAAC
GCCTGCCAATGCCGGGCGGGACGGTACCTCTCGAGGTACCGTGCTGGTGT
GGTGTGTTTGAAGAGGGCGGGAAGAAGACGCGATCGCCGACGACGTTTTG
GAGAAAGAATGCGATGAGACACCACCTCCTCACACATTTCCTTCCCCCTA
CACACAGGAAGCGAGCGAAGAGGCAGCGAGAGCAAAAGCAACAGCAGCAC
CACCAGCAGCAGTAGTAGCAGCAGCGTAAGGACCAGCACCAGCTCCAGGA
CCAGGACTCTCTCGACACCAGGGACGTCATGGAGTGCGTGGATGGAGTTT
GCAAGTTCGTACCAAAAAGCCAGCGTGGCGGTGGGCATAAGGGAGTGGGG
GAGAACGATGAGAACGTTGCCCCCGCCTTGCCCCTAGTTGCGGTCGGGGA
CAAGCTTCCCATGCCGCTACCCCTGGAGCAGCTTGAGGAGGGAGGGAAGG
CAACGACGCTGCAGAGCCTTTGTTCTGAGAGAGGGGATCGAGGCCGAGTA
GTCGTGTTGGGTAAGAGTGGAGACGGTGGGAACTGGAAGAGGGATGCATG
GCCAGAAGCGGCATTGCCTTGTCGACTGTGTGCACCAATCTGCTCATCTC
GACTTGCTCGCTCTTTGAGCATTAGTCTGTGCTCTTTGGACGTCCAACCT
ATCATTTTATTCCCTTTCCTCCTTAACCCTCCTCCCTCTTCCTCCTTCCC
TCCCACCCCACCCATCAGATCTCTGGTCCAATGCCTGCGTCCGGTGCCCT
GAGGCCCTGGATAAGCTGAACGCCCTCGCCGAGAGAATGAAGGAAGACGT
GGAGAAGGGGCTCGTTATCTTTGCTTCTGTCAACATTGATGATAAAGCCA
AGGCCCGGGGGCTGATCGCAGAGAGGTGAGGGACGGCAGATAAAGTGAGG
GAAGGATATGTGGTAGTGTAGCTCGCCATAGGAGGACGATCAAGCGAGAT
ATCGCGGCAGACACACCCATTCCGCCCCTCCCTTTTTGTTAACTTCCTTC
CTCCCCATTCCCCCCACCCCCCTTTCCTTCCCTCCATCCTTCTCGTCCAC
AGGAAGTGGACCAGCCTCTCTCATCTCTTCGTCGATGCCGCCACCAAAGA
GATGCTCAAGGCACGCTTTGGCTTGACGAGTGTACCTTTTGTGATGGTGT
TTGACCAGGTAAGGCGACGGATTGGGAAGAGAGGGAGAGAGGGAGGGAGG
AATGGAAACGAGAGGAGGTGAAAAGCAGGGGCAAACCATTGGTGAGGGAC
ATGATCCGAAAACTGAAAATGCCTCCACACCATTCCTCCCCCCCCACTCC
ACCCCCTCTCCTCGCCATTCCTCATTTCTCCGTCTCTCCCGCTGTCGCTC
AGGAGGGCACGCTTAGCCAGATGGGCAACCCCAAGAAGATCGACTTTGAT
GCCCTCCCGGCCATGTGGAAGGCGAAGAGACAGGTAGGGAATGAGGCGAA
AAAAGAAGGGGGGATAGATCGGCAGAAGAAGGAGGATGTGGCGAAAGAGG
AGATGCCTGTCAAGGCCTTGCAGGCTTTTACGTTGGACGAGGACTTTTGA
GTGGAAGGAAAAAGGAAGGAAAAGAACCGATGAAATAAAGCAAAGGGTTC
GCCACACTCAAGAAAATAAAGCACTGTTGGAGAGGGAGTAAAGCTCCGCA
GGTTTTCCTTTTTGGGACGCTGGAACGATGAATGAATGCTTCTCACACAT
TTTCTGGTGACTTTTAAGGGAGTCGCTGCTAGCAAGAGTGAGGCAGCAAA
ATAGTAACATCATCATTTACCATAAATGCATTACTGTGGCACCAATCATA
GAAGGTGTGTTGCAAATAAGTACATCGCACATTTAGACAATGGGGTGGAC
ATTGGATCACTTGGAGTTATAAATCATCGGAAAACTCATCCTGAGCGTTT
CGCCCTTATGAAATCTCAGACATGTCTCCTCCCTCCCGATGTAACACAAG
TGCGGATTTGATAAGCCTCGCTTCCTCTCTCGCTATGTATTGCGCATAAT
ACACATGAAAATTGAGCTCACGGCACCTCACCGTTGACGACGACTTCGCT
ACCGCTACCCGCTACCTTGGCAGCTGGGCGATTTGTGCACGCCGAGGTCG
ACCACAATATGTCCAGTTCGTCGGATTATCCGATGACAATCAGTTCTAGT
CATGATTCGCGCGCATTAGCACCCATTCGCCCATTCGGCACCGTACCAAC
AGAGCCCCCCCCCCGGTCCAGAATCGAGCCAGATACAATGATGTGTCCTG
AGTAGCAGGAATGAATTCCTCATCACCAATCCCCACATACAACCGAAGTC
CTCACGCATTTACCAGCCACAGCGAGAATCGTTTACTGCAGGGCAGGCTA
AAGGGAAGAATCCTTCCAAAAAGACAATGAAGTGAAGAGGAGAAGAATAC
TTAACCTGGAGAAAGAGAAAACCTGGAGCAGAAAGCGCGTGCCCAATCTA
TTTTCTCATGCTGCGAGAAAAGGAGTGTAACCGTGGCTGGTTCAAAAAAT
GGGTGCAGTACTGTCTCGCTCCTCTCGAGAGAAAGATCATTTCTCTGGGA
GAGGGGAGATCAGCCAGAGAGTCCCTGGGCAGGGACCGGTGCC back to topCoding sequence (CDS) from alignment at scaffold_11:11911..15053+ >mRNA_5589 ID=mRNA_5589|Name=jgi.p|Nanoce1779_2|630406|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_11:11911..15053+ (Nannochloropsis oceanica)
ATGGAGTGCGTGGATGGAGTTTGCAAGTTCGTACCAAAAAGCCAGCGTGG
CGGTGGGCATAAGGGAGTGGGGGAGAACGATGAGAACGTTGCCCCCGCCT
TGCCCCTAGTTGCGGTCGGGGACAAGCTTCCCATGCCGCTACCCCTGGAG
CAGCTTGAGGAGGGAGGGAAGGCAACGACGCTGCAGAGCCTTTGTTCTGA
GAGAGGGGATCGAGGCCGAGTAGTCGTGTTGGATCTCTGGTCCAATGCCT
GCGTCCGGTGCCCTGAGGCCCTGGATAAGCTGAACGCCCTCGCCGAGAGA
ATGAAGGAAGACGTGGAGAAGGGGCTCGTTATCTTTGCTTCTGTCAACAT
TGATGATAAAGCCAAGGCCCGGGGGCTGATCGCAGAGAGGAAGTGGACCA
GCCTCTCTCATCTCTTCGTCGATGCCGCCACCAAAGAGATGCTCAAGGCA
CGCTTTGGCTTGACGAGTGTACCTTTTGTGATGGTGTTTGACCAGGAGGG
CACGCTTAGCCAGATGGGCAACCCCAAGAAGATCGACTTTGATGCCCTCC
CGGCCATGTGGAAGGCGAAGAGACAGGTAGGGAATGAGGCGAAAAAAGAA
GGGGGGATAGATCGGCAGAAGAAGGAGGATGTGGCGAAAGAGGAGATGCC
TGTCAAGGCCTTGCAGGCTTTTACGTTGGACGAGGACTTTTGAATGGAGT
GCGTGGATGGAGTTTGCAAGTTCGTACCAAAAAGCCAGCGTGGCGGTGGG
CATAAGGGAGTGGGGGAGAACGATGAGAACGTTGCCCCCGCCTTGCCCCT
AGTTGCGGTCGGGGACAAGCTTCCCATGCCGCTACCCCTGGAGCAGCTTG
AGGAGGGAGGGAAGGCAACGACGCTGCAGAGCCTTTGTTCTGAGAGAGGG
GATCGAGGCCGAGTAGTCGTGTTGGATCTCTGGTCCAATGCCTGCGTCCG
GTGCCCTGAGGCCCTGGATAAGCTGAACGCCCTCGCCGAGAGAATGAAGG
AAGACGTGGAGAAGGGGCTCGTTATCTTTGCTTCTGTCAACATTGATGAT
AAAGCCAAGGCCCGGGGGCTGATCGCAGAGAGGAAGTGGACCAGCCTCTC
TCATCTCTTCGTCGATGCCGCCACCAAAGAGATGCTCAAGGCACGCTTTG
GCTTGACGAGTGTACCTTTTGTGATGGTGTTTGACCAGGAGGGCACGCTT
AGCCAGATGGGCAACCCCAAGAAGATCGACTTTGATGCCCTCCCGGCCAT
GTGGAAGGCGAAGAGACAGGTAGGGAATGAGGCGAAAAAAGAAGGGGGGA
TAGATCGGCAGAAGAAGGAGGATGTGGCGAAAGAGGAGATGCCTGTCAAG
GCCTTGCAGGCTTTTACGTTGGACGAGGACTTTTGAATGGAGTGCGTGGA
TGGAGTTTGCAAGTTCGTACCAAAAAGCCAGCGTGGCGGTGGGCATAAGG
GAGTGGGGGAGAACGATGAGAACGTTGCCCCCGCCTTGCCCCTAGTTGCG
GTCGGGGACAAGCTTCCCATGCCGCTACCCCTGGAGCAGCTTGAGGAGGG
AGGGAAGGCAACGACGCTGCAGAGCCTTTGTTCTGAGAGAGGGGATCGAG
GCCGAGTAGTCGTGTTGGATCTCTGGTCCAATGCCTGCGTCCGGTGCCCT
GAGGCCCTGGATAAGCTGAACGCCCTCGCCGAGAGAATGAAGGAAGACGT
GGAGAAGGGGCTCGTTATCTTTGCTTCTGTCAACATTGATGATAAAGCCA
AGGCCCGGGGGCTGATCGCAGAGAGGAAGTGGACCAGCCTCTCTCATCTC
TTCGTCGATGCCGCCACCAAAGAGATGCTCAAGGCACGCTTTGGCTTGAC
GAGTGTACCTTTTGTGATGGTGTTTGACCAGGAGGGCACGCTTAGCCAGA
TGGGCAACCCCAAGAAGATCGACTTTGATGCCCTCCCGGCCATGTGGAAG
GCGAAGAGACAGGTAGGGAATGAGGCGAAAAAAGAAGGGGGGATAGATCG
GCAGAAGAAGGAGGATGTGGCGAAAGAGGAGATGCCTGTCAAGGCCTTGC
AGGCTTTTACGTTGGACGAGGACTTTTGAATGGAGTGCGTGGATGGAGTT
TGCAAGTTCGTACCAAAAAGCCAGCGTGGCGGTGGGCATAAGGGAGTGGG
GGAGAACGATGAGAACGTTGCCCCCGCCTTGCCCCTAGTTGCGGTCGGGG
ACAAGCTTCCCATGCCGCTACCCCTGGAGCAGCTTGAGGAGGGAGGGAAG
GCAACGACGCTGCAGAGCCTTTGTTCTGAGAGAGGGGATCGAGGCCGAGT
AGTCGTGTTGGATCTCTGGTCCAATGCCTGCGTCCGGTGCCCTGAGGCCC
TGGATAAGCTGAACGCCCTCGCCGAGAGAATGAAGGAAGACGTGGAGAAG
GGGCTCGTTATCTTTGCTTCTGTCAACATTGATGATAAAGCCAAGGCCCG
GGGGCTGATCGCAGAGAGGAAGTGGACCAGCCTCTCTCATCTCTTCGTCG
ATGCCGCCACCAAAGAGATGCTCAAGGCACGCTTTGGCTTGACGAGTGTA
CCTTTTGTGATGGTGTTTGACCAGGAGGGCACGCTTAGCCAGATGGGCAA
CCCCAAGAAGATCGACTTTGATGCCCTCCCGGCCATGTGGAAGGCGAAGA
GACAGGTAGGGAATGAGGCGAAAAAAGAAGGGGGGATAGATCGGCAGAAG
AAGGAGGATGTGGCGAAAGAGGAGATGCCTGTCAAGGCCTTGCAGGCTTT
TACGTTGGACGAGGACTTTTGA back to top
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