jgi.p|Nanoce1779_2|555403, mRNA_5588 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|555403
Unique Name	mRNA_5588
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1486
Alignment location	scaffold_11:10236..11721 +

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Properties


Property Name	Value
TranscriptId	555489
Track	FilteredModels2
ProteinId	555403

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:10236..11721 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555403	gene_5588	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|555403	mRNA_5588-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5588	CDS_5588	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:10236..11721+
coding sequence from alignment at scaffold_11:10236..11721+

mRNA sequence

>mRNA_5588 ID=mRNA_5588|Name=jgi.p|Nanoce1779_2|555403|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp
CACAGACACATCCAGGACGATTTCGGGGCCTTTTCCACTCTAAAAAAGTT
CCCGTGAGCCTCGGTAAGGCATATGGGTGTGCTTCATGTGCCTTTTGCTT
TTTACAGGGTTTGCTCTGCTTCTCCAACCCTGGAGTGTTGTTCCAGGGTC
GTTCCAGAGTCATTCCTGTGACATCCATCTATATTGTCTTATGTCCATCA
AAACGAGGCCTCCCTGGGCGACGGAGGGAATGCCGGCCATTGATTTTTTC
GCTTGACGAAGAAAAATCCAACCATAAACAAGCCGCGCCCTTGGCAGCCG
GTCACACAGAAGCGATGAAGCTCAAGCTCCGGAGAAACGCCTCAGCTGAT
GGTGGGATGCAGGATATACGGTGGTATTATCCATGCGTTACTACCACCTA
TACATGCGACACACCCGTTGCATATTACAGTCACGATGAGATGAAAAGCT
TCACTCTGTCAGAGAAAGACTAAGGGCCTGGCCAGGCTTTGCCTCCCTCG
CCTTCCCTTCCTGCCTGGAGCTTCCAACCTCCCCATGATAATCACCACCC
AATCACCCAAATCAAAGTGAAATTCCACAATACCACAGCTATAAGAGGAG
CCAAAGCTCATCATTACCACGTGCTCCACCTTACGATCCTCCCTCGTTTA
CCCTTTGCCTCCTTCTCTGCTTTGCTCAACCACCGGCGCACCTCTTCCCT
GCGAGGCACGAAGAGATAATCATGCCCCCCCGCAGCAGCAGCGCTAGCAC
TAGCAGCCCTTCCTCACCTTCCACGCGCCGTAAACAGCAACACTCGCAGC
ATCATAAGCAAAGGCAAACAGGTAAGCACGTACTCTTGAACAAACGAGGG
CTCTCTCTGGTCTTCGACCCGGAAGCCCGCCGGGAGTACTTGACTGGCTT
TAGCAAGCGCAAGACTGAGCGGCGGAAGTTCGGTCTGGCGATGCAAAAAG
TGAAGGACCGAAAGGCCCGTTTATTGGAGAGGGAAGAAATCCGCAAGGCC
AAGCAAGACGCTTGGGATGAGCTTCCGGCGTCAGTGAAGGAGGCGGATGA
GATGGCATTCGGGAGGAAAGGGGGAGGGGGGGAAAGGGGGGAGGAAGTAG
TGGAAGAGGTGGTGTACGATGACCAATACACAACGTCTACATTTGGGGAG
TCGGTGATGGTGACGACGTTTTTGGGCATCCCCTCCACGGGGGAGGAGGG
GGAGGAGGAGGAGGGCGGAGGGGAGGTGTTGGCCATGGTGCGGGGTGAGA
GGAAGGGGGATGGCGTGGACAGGGAGCAACTACACGCGGGCTCGGTGGCT
CGATTCAAGAAGATATTGACGGGGAATATGCCGGCGAAGACGAAGAGGAA
GGGAGGGAGAGAGGGGACAAGGGAGAACATCTCGGGGTCGTACATGCCTA
AGGGCAAAGGGAAGGGCGAGGATGAGGGTGGGGGAGGTGGGAAGAGGGGG
AAAAAGGGGAAGAAGGGAAAGAAAGGAAGGCGGTGA

protein sequence of jgi.p|Nanoce1779_2|555403

>mRNA_5588-protein ID=mRNA_5588-protein|Name=jgi.p|Nanoce1779_2|555403|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MPPRSSSASTSSPSSPSTRRKQQHSQHHKQRQTGKHVLLNKRGLSLVFDP
EARREYLTGFSKRKTERRKFGLAMQKVKDRKARLLEREEIRKAKQDAWDE
LPASVKEADEMAFGRKGGGGERGEEVVEEVVYDDQYTTSTFGESVMVTTF
LGIPSTGEEGEEEEGGGEVLAMVRGERKGDGVDREQLHAGSVARFKKILT
GNMPAKTKRKGGREGTRENISGSYMPKGKGKGEDEGGGGGKRGKKGKKGK
KGRR*

mRNA from alignment at scaffold_11:10236..11721+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5588 ID=mRNA_5588|Name=jgi.p|Nanoce1779_2|555403|organism=Nannochloropsis oceanica|type=mRNA|length=1486bp|location=Sequence derived from alignment at scaffold_11:10236..11721+ (Nannochloropsis oceanica)
CACAGACACATCCAGGACGATTTCGGGGCCTTTTCCACTCTAAAAAAGTT
CCCGTGAGCCTCGGTAAGGCATATGGGTGTGCTTCATGTGCCTTTTGCTT
TTTACAGGGTTTGCTCTGCTTCTCCAACCCTGGAGTGTTGTTCCAGGGTC
GTTCCAGAGTCATTCCTGTGACATCCATCTATATTGTCTTATGTCCATCA
AAACGAGGCCTCCCTGGGCGACGGAGGGAATGCCGGCCATTGATTTTTTC
GCTTGACGAAGAAAAATCCAACCATAAACAAGCCGCGCCCTTGGCAGCCG
GTCACACAGAAGCGATGAAGCTCAAGCTCCGGAGAAACGCCTCAGCTGAT
GGTGGGATGCAGGATATACGGTGGTATTATCCATGCGTTACTACCACCTA
TACATGCGACACACCCGTTGCATATTACAGTCACGATGAGATGAAAAGCT
TCACTCTGTCAGAGAAAGACTAAGGGCCTGGCCAGGCTTTGCCTCCCTCG
CCTTCCCTTCCTGCCTGGAGCTTCCAACCTCCCCATGATAATCACCACCC
AATCACCCAAATCAAAGTGAAATTCCACAATACCACAGCTATAAGAGGAG
CCAAAGCTCATCATTACCACGTGCTCCACCTTACGATCCTCCCTCGTTTA
CCCTTTGCCTCCTTCTCTGCTTTGCTCAACCACCGGCGCACCTCTTCCCT
GCGAGGCACGAAGAGATAATCATGCCCCCCCGCAGCAGCAGCGCTAGCAC
TAGCAGCCCTTCCTCACCTTCCACGCGCCGTAAACAGCAACACTCGCAGC
ATCATAAGCAAAGGCAAACAGGTAAGCACGTACTCTTGAACAAACGAGGG
CTCTCTCTGGTCTTCGACCCGGAAGCCCGCCGGGAGTACTTGACTGGCTT
TAGCAAGCGCAAGACTGAGCGGCGGAAGTTCGGTCTGGCGATGCAAAAAG
TGAAGGACCGAAAGGCCCGTTTATTGGAGAGGGAAGAAATCCGCAAGGCC
AAGCAAGACGCTTGGGATGAGCTTCCGGCGTCAGTGAAGGAGGCGGATGA
GATGGCATTCGGGAGGAAAGGGGGAGGGGGGGAAAGGGGGGAGGAAGTAG
TGGAAGAGGTGGTGTACGATGACCAATACACAACGTCTACATTTGGGGAG
TCGGTGATGGTGACGACGTTTTTGGGCATCCCCTCCACGGGGGAGGAGGG
GGAGGAGGAGGAGGGCGGAGGGGAGGTGTTGGCCATGGTGCGGGGTGAGA
GGAAGGGGGATGGCGTGGACAGGGAGCAACTACACGCGGGCTCGGTGGCT
CGATTCAAGAAGATATTGACGGGGAATATGCCGGCGAAGACGAAGAGGAA
GGGAGGGAGAGAGGGGACAAGGGAGAACATCTCGGGGTCGTACATGCCTA
AGGGCAAAGGGAAGGGCGAGGATGAGGGTGGGGGAGGTGGGAAGAGGGGG
AAAAAGGGGAAGAAGGGAAAGAAAGGAAGGCGGTGA

Coding sequence (CDS) from alignment at scaffold_11:10236..11721+

>mRNA_5588 ID=mRNA_5588|Name=jgi.p|Nanoce1779_2|555403|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at scaffold_11:10236..11721+ (Nannochloropsis oceanica)
ATGCCCCCCCGCAGCAGCAGCGCTAGCACTAGCAGCCCTTCCTCACCTTC
CACGCGCCGTAAACAGCAACACTCGCAGCATCATAAGCAAAGGCAAACAG
GTAAGCACGTACTCTTGAACAAACGAGGGCTCTCTCTGGTCTTCGACCCG
GAAGCCCGCCGGGAGTACTTGACTGGCTTTAGCAAGCGCAAGACTGAGCG
GCGGAAGTTCGGTCTGGCGATGCAAAAAGTGAAGGACCGAAAGGCCCGTT
TATTGGAGAGGGAAGAAATCCGCAAGGCCAAGCAAGACGCTTGGGATGAG
CTTCCGGCGTCAGTGAAGGAGGCGGATGAGATGGCATTCGGGAGGAAAGG
GGGAGGGGGGGAAAGGGGGGAGGAAGTAGTGGAAGAGGTGGTGTACGATG
ACCAATACACAACGTCTACATTTGGGGAGTCGGTGATGGTGACGACGTTT
TTGGGCATCCCCTCCACGGGGGAGGAGGGGGAGGAGGAGGAGGGCGGAGG
GGAGGTGTTGGCCATGGTGCGGGGTGAGAGGAAGGGGGATGGCGTGGACA
GGGAGCAACTACACGCGGGCTCGGTGGCTCGATTCAAGAAGATATTGACG
GGGAATATGCCGGCGAAGACGAAGAGGAAGGGAGGGAGAGAGGGGACAAG
GGAGAACATCTCGGGGTCGTACATGCCTAAGGGCAAAGGGAAGGGCGAGG
ATGAGGGTGGGGGAGGTGGGAAGAGGGGGAAAAAGGGGAAGAAGGGAAAG
AAAGGAAGGCGGTGA

Synonyms

Publications